HEADER APOPTOSIS 08-SEP-06 2IB1 TITLE SOLUTION STRUCTURE OF P45 DEATH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH DOMAIN CONTAINING MEMBRANE PROTEIN NRADD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 138-228; COMPND 5 SYNONYM: NEUROTROPHIN RECEPTOR ASSOCIATED DEATH DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NRADD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS P45, DEATH DOMAIN, APOPTOSIS, P75, NOGO, FADD EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.VILAR,T.C.SUNG,K.F.LEE,R.RIEK REVDAT 3 09-MAR-22 2IB1 1 REMARK REVDAT 2 24-FEB-09 2IB1 1 VERSN REVDAT 1 23-OCT-07 2IB1 0 JRNL AUTH M.VILAR,T.C.SUNG,K.F.LEE,R.RIEK JRNL TITL SOLUTION STRUCTURE OF P45 DEATH DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT (CYANA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1319 RESTRAINTS, 1053 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 266 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 2IB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039360. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 137 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM PROTEIN, PBS (PHOSPHATE REMARK 210 BUFFER SALINE) BUFFER, PH 7.5, REMARK 210 298 K REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA-J; 3D_15N-SEPARATED_NOESY; REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 178 HG1 THR A 184 1.42 REMARK 500 HE2 HIS A 164 OD1 ASP A 204 1.47 REMARK 500 HH22 ARG A 187 OE1 GLU A 193 1.50 REMARK 500 H2 PRO A 138 OE1 GLN A 140 1.54 REMARK 500 O ALA A 190 HH21 ARG A 196 1.56 REMARK 500 H3 PRO A 138 OE1 GLN A 141 1.56 REMARK 500 O THR A 184 H ASN A 188 1.56 REMARK 500 O VAL A 214 H LEU A 218 1.59 REMARK 500 O GLN A 168 H VAL A 172 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 148 -39.86 -159.84 REMARK 500 1 MET A 151 91.38 -55.03 REMARK 500 1 LYS A 156 -167.57 -108.32 REMARK 500 1 ASP A 178 78.37 -106.33 REMARK 500 1 MET A 180 127.42 73.16 REMARK 500 1 ALA A 191 3.87 81.90 REMARK 500 1 GLN A 192 -44.04 -156.97 REMARK 500 1 GLU A 193 -47.72 -168.94 REMARK 500 1 ASN A 195 -60.28 68.43 REMARK 500 1 LEU A 199 -60.28 66.26 REMARK 500 1 SER A 220 63.65 -173.19 REMARK 500 1 SER A 224 -168.02 178.98 REMARK 500 1 SER A 225 -140.04 59.18 REMARK 500 1 VAL A 227 168.66 72.04 REMARK 500 2 GLN A 139 -58.87 70.79 REMARK 500 2 MET A 150 55.01 -98.10 REMARK 500 2 MET A 151 -156.05 -144.75 REMARK 500 2 PRO A 154 145.64 -38.56 REMARK 500 2 LYS A 156 -164.02 -69.70 REMARK 500 2 CYS A 177 29.66 -141.93 REMARK 500 2 MET A 180 126.68 71.29 REMARK 500 2 ALA A 191 -24.18 85.08 REMARK 500 2 GLN A 192 30.93 -164.84 REMARK 500 2 ASN A 195 56.80 -68.12 REMARK 500 2 ARG A 211 55.54 -145.97 REMARK 500 2 SER A 220 64.03 -172.06 REMARK 500 2 SER A 226 64.19 -68.92 REMARK 500 2 VAL A 227 168.40 63.10 REMARK 500 3 LEU A 149 -33.45 -141.33 REMARK 500 3 MET A 151 53.83 -101.78 REMARK 500 3 LYS A 156 -175.31 -59.31 REMARK 500 3 TYR A 167 -163.08 -76.90 REMARK 500 3 MET A 180 132.56 69.69 REMARK 500 3 GLN A 192 -42.50 -165.01 REMARK 500 3 GLU A 193 -42.82 -179.38 REMARK 500 3 ASN A 195 -59.52 66.06 REMARK 500 3 ALA A 197 30.15 -95.13 REMARK 500 3 LEU A 199 -61.98 63.59 REMARK 500 3 SER A 219 42.72 -107.29 REMARK 500 3 SER A 220 108.37 -53.90 REMARK 500 3 GLU A 223 -73.04 -120.41 REMARK 500 3 SER A 226 -47.52 180.00 REMARK 500 3 VAL A 227 164.44 67.37 REMARK 500 4 GLN A 139 -55.58 66.00 REMARK 500 4 GLU A 153 50.17 -153.12 REMARK 500 4 LYS A 156 -169.91 -67.99 REMARK 500 4 TYR A 167 -166.34 -74.40 REMARK 500 4 MET A 180 133.28 74.23 REMARK 500 4 ALA A 191 -26.38 87.55 REMARK 500 4 GLN A 192 25.75 -153.49 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2IB1 A 138 228 UNP Q8CJ26 Q8CJ26_MOUSE 138 228 SEQRES 1 A 91 PRO GLN GLN GLN GLN GLU GLU VAL GLN ARG LEU LEU MET SEQRES 2 A 91 MET GLY GLU PRO ALA LYS GLY TRP GLN GLU LEU ALA GLY SEQRES 3 A 91 HIS LEU GLY TYR GLN ALA GLU ALA VAL GLU THR MET ALA SEQRES 4 A 91 CYS ASP GLN MET PRO ALA TYR THR LEU LEU ARG ASN TRP SEQRES 5 A 91 ALA ALA GLN GLU GLY ASN ARG ALA THR LEU ARG VAL LEU SEQRES 6 A 91 GLU ASP ALA LEU ALA ALA ILE GLY ARG GLU ASP VAL VAL SEQRES 7 A 91 GLN VAL LEU SER SER PRO ALA GLU SER SER SER VAL VAL HELIX 1 1 GLN A 139 GLU A 144 1 6 HELIX 2 2 VAL A 145 MET A 150 1 6 HELIX 3 3 GLY A 157 GLY A 166 1 10 HELIX 4 4 GLN A 168 ALA A 176 1 9 HELIX 5 5 MET A 180 TRP A 189 1 10 HELIX 6 6 ARG A 200 ALA A 208 1 9 HELIX 7 7 ARG A 211 SER A 219 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1