data_2ICG # _entry.id 2ICG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ICG pdb_00002icg 10.2210/pdb2icg/pdb RCSB RCSB039409 ? ? WWPDB D_1000039409 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 368054 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2ICG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-09-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (NP_472245.1) from Listeria Innocua at 1.65 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2ICG _cell.length_a 100.030 _cell.length_b 100.030 _cell.length_c 62.740 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ICG _symmetry.Int_Tables_number 182 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lin2918 protein' 17628.346 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 172 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ASSFLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGLSAAS IPDVKFATEQARTFGDINKE(MSE)I(MSE)IKNSGYGSIFSIDTSIIGSEGEPVIVETNLSFKDNTEKKVVANSFGEFL LEEIELSLTDLG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMASSFLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGLSAASIPDV KFATEQARTFGDINKEMIMIKNSGYGSIFSIDTSIIGSEGEPVIVETNLSFKDNTEKKVVANSFGEFLLEEIELSLTDLG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 368054 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ALA n 1 4 SER n 1 5 SER n 1 6 PHE n 1 7 LEU n 1 8 GLU n 1 9 GLU n 1 10 VAL n 1 11 ASP n 1 12 ARG n 1 13 LEU n 1 14 ILE n 1 15 THR n 1 16 LEU n 1 17 SER n 1 18 GLY n 1 19 ILE n 1 20 THR n 1 21 PHE n 1 22 HIS n 1 23 ALA n 1 24 SER n 1 25 GLY n 1 26 THR n 1 27 GLY n 1 28 THR n 1 29 PRO n 1 30 GLU n 1 31 LEU n 1 32 ILE n 1 33 LYS n 1 34 ILE n 1 35 TYR n 1 36 GLN n 1 37 ASP n 1 38 ALA n 1 39 LEU n 1 40 GLY n 1 41 ASN n 1 42 GLU n 1 43 PHE n 1 44 PRO n 1 45 GLU n 1 46 THR n 1 47 TYR n 1 48 LYS n 1 49 LEU n 1 50 PHE n 1 51 LEU n 1 52 GLU n 1 53 LYS n 1 54 TYR n 1 55 GLY n 1 56 THR n 1 57 LEU n 1 58 THR n 1 59 PHE n 1 60 ASN n 1 61 GLY n 1 62 VAL n 1 63 SER n 1 64 PHE n 1 65 TYR n 1 66 GLY n 1 67 ILE n 1 68 SER n 1 69 LYS n 1 70 ARG n 1 71 GLY n 1 72 LEU n 1 73 SER n 1 74 ALA n 1 75 ALA n 1 76 SER n 1 77 ILE n 1 78 PRO n 1 79 ASP n 1 80 VAL n 1 81 LYS n 1 82 PHE n 1 83 ALA n 1 84 THR n 1 85 GLU n 1 86 GLN n 1 87 ALA n 1 88 ARG n 1 89 THR n 1 90 PHE n 1 91 GLY n 1 92 ASP n 1 93 ILE n 1 94 ASN n 1 95 LYS n 1 96 GLU n 1 97 MSE n 1 98 ILE n 1 99 MSE n 1 100 ILE n 1 101 LYS n 1 102 ASN n 1 103 SER n 1 104 GLY n 1 105 TYR n 1 106 GLY n 1 107 SER n 1 108 ILE n 1 109 PHE n 1 110 SER n 1 111 ILE n 1 112 ASP n 1 113 THR n 1 114 SER n 1 115 ILE n 1 116 ILE n 1 117 GLY n 1 118 SER n 1 119 GLU n 1 120 GLY n 1 121 GLU n 1 122 PRO n 1 123 VAL n 1 124 ILE n 1 125 VAL n 1 126 GLU n 1 127 THR n 1 128 ASN n 1 129 LEU n 1 130 SER n 1 131 PHE n 1 132 LYS n 1 133 ASP n 1 134 ASN n 1 135 THR n 1 136 GLU n 1 137 LYS n 1 138 LYS n 1 139 VAL n 1 140 VAL n 1 141 ALA n 1 142 ASN n 1 143 SER n 1 144 PHE n 1 145 GLY n 1 146 GLU n 1 147 PHE n 1 148 LEU n 1 149 LEU n 1 150 GLU n 1 151 GLU n 1 152 ILE n 1 153 GLU n 1 154 LEU n 1 155 SER n 1 156 LEU n 1 157 THR n 1 158 ASP n 1 159 LEU n 1 160 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene NP_472245.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria innocua' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1642 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q926X2_LISIN _struct_ref.pdbx_db_accession Q926X2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ICG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 160 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q926X2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ICG GLY A 1 ? UNP Q926X2 ? ? 'expression tag' 0 1 1 2ICG MSE A 2 ? UNP Q926X2 MET 1 'modified residue' 1 2 1 2ICG MSE A 97 ? UNP Q926X2 MET 96 'modified residue' 96 3 1 2ICG MSE A 99 ? UNP Q926X2 MET 98 'modified residue' 98 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2ICG # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 52.13 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.6M (NH4)2SO4, 0.1M Bicine, pH 9.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2006-08-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94926 1.0 2 0.97925 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list 0.94926,0.97925 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 2ICG _reflns.d_resolution_high 1.650 _reflns.d_resolution_low 29.501 _reflns.number_obs 22770 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_netI_over_sigmaI 9.89 _reflns.percent_possible_obs 99.6 _reflns.B_iso_Wilson_estimate 30.934 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.65 1.71 20000 ? ? 0.01117 1.35 ? ? ? ? 3602 97.80 1 1 1.71 1.78 21192 ? ? 0.764 2.2 ? ? ? ? 3793 87.90 2 1 1.78 1.86 21261 ? ? 0.585 2.9 ? ? ? ? 3789 91.00 3 1 1.86 1.96 22151 ? ? 0.398 4.3 ? ? ? ? 3956 91.40 4 1 1.96 2.08 22149 ? ? 0.26 6.3 ? ? ? ? 3952 96.40 5 1 2.08 2.24 22811 ? ? 0.184 8.8 ? ? ? ? 4066 96.40 6 1 2.24 2.46 22790 ? ? 0.123 12.0 ? ? ? ? 4061 97.80 7 1 2.46 2.82 23941 ? ? 0.092 15.5 ? ? ? ? 4264 99.20 8 1 2.82 ? 23432 ? ? 0.073 21.4 ? ? ? ? 4226 99.60 9 1 # _refine.entry_id 2ICG _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 29.501 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.740 _refine.ls_number_reflns_obs 22751 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (3) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (4) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. (6) THERE ARE UNMODELED DENSITIES IN BETWEEN GLU49 AND GLU150. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.235 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1165 _refine.B_iso_mean 23.603 _refine.aniso_B[1][1] -1.690 _refine.aniso_B[2][2] -1.690 _refine.aniso_B[3][3] 2.540 _refine.aniso_B[1][2] -0.850 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.101 _refine.overall_SU_ML 0.097 _refine.overall_SU_B 6.053 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.2 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1220 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1398 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 29.501 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1277 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 848 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1731 1.526 1.977 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2092 0.947 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 167 5.686 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 54 39.967 25.556 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 224 13.334 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3 16.049 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 199 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1433 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 254 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 244 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 829 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 637 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 634 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 140 0.161 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 17 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 13 0.290 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 885 2.383 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 335 0.611 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1302 3.080 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 513 5.078 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 426 6.784 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.692 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.910 _refine_ls_shell.number_reflns_R_work 1544 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 89 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1633 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ICG _struct.title 'Crystal structure of a protein of unknown function (NP_472245.1) from Listeria innocua at 1.65 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_472245.1, hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, Structural Genomics-Unknown function COMPLEX ; _struct_keywords.pdbx_keywords 'Structural Genomics/Unknown function' _struct_keywords.entry_id 2ICG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? SER A 17 ? GLY A 0 SER A 16 1 ? 17 HELX_P HELX_P2 2 THR A 28 ? GLY A 40 ? THR A 27 GLY A 39 1 ? 13 HELX_P HELX_P3 3 PRO A 44 ? TYR A 54 ? PRO A 43 TYR A 53 1 ? 11 HELX_P HELX_P4 4 ARG A 70 ? ALA A 74 ? ARG A 69 ALA A 73 5 ? 5 HELX_P HELX_P5 5 ASP A 79 ? PHE A 90 ? ASP A 78 PHE A 89 1 ? 12 HELX_P HELX_P6 6 SER A 130 ? THR A 135 ? SER A 129 THR A 134 1 ? 6 HELX_P HELX_P7 7 SER A 143 ? ASP A 158 ? SER A 142 ASP A 157 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ALA 3 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A GLU 96 C ? ? ? 1_555 A MSE 97 N ? ? A GLU 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 97 C ? ? ? 1_555 A ILE 98 N ? ? A MSE 96 A ILE 97 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A ILE 98 C ? ? ? 1_555 A MSE 99 N ? ? A ILE 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale6 covale both ? A MSE 99 C ? ? ? 1_555 A ILE 100 N ? ? A MSE 98 A ILE 99 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 76 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 77 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 11.82 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 57 ? PHE A 59 ? LEU A 56 PHE A 58 A 2 VAL A 62 ? PHE A 64 ? VAL A 61 PHE A 63 B 1 MSE A 97 ? ASN A 102 ? MSE A 96 ASN A 101 B 2 ILE A 108 ? ILE A 116 ? ILE A 107 ILE A 115 B 3 PRO A 122 ? THR A 127 ? PRO A 121 THR A 126 B 4 LYS A 138 ? ALA A 141 ? LYS A 137 ALA A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 57 ? N LEU A 56 O PHE A 64 ? O PHE A 63 B 1 2 N LYS A 101 ? N LYS A 100 O PHE A 109 ? O PHE A 108 B 2 3 N SER A 110 ? N SER A 109 O VAL A 125 ? O VAL A 124 B 3 4 N GLU A 126 ? N GLU A 125 O LYS A 138 ? O LYS A 137 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 160 ? 3 'BINDING SITE FOR RESIDUE CL A 160' AC2 Software A SO4 161 ? 4 'BINDING SITE FOR RESIDUE SO4 A 161' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 24 ? SER A 23 . ? 1_555 ? 2 AC1 3 SER A 68 ? SER A 67 . ? 1_555 ? 3 AC1 3 LYS A 69 ? LYS A 68 . ? 1_555 ? 4 AC2 4 ARG A 70 ? ARG A 69 . ? 1_555 ? 5 AC2 4 ALA A 74 ? ALA A 73 . ? 1_555 ? 6 AC2 4 ALA A 75 ? ALA A 74 . ? 1_555 ? 7 AC2 4 SER A 76 ? SER A 75 . ? 1_555 ? # _atom_sites.entry_id 2ICG _atom_sites.fract_transf_matrix[1][1] 0.01000 _atom_sites.fract_transf_matrix[1][2] 0.00577 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01154 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01594 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 THR 15 14 14 THR THR A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 HIS 22 21 21 HIS HIS A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 GLN 36 35 35 GLN GLN A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 TYR 47 46 46 TYR TYR A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 TYR 54 53 53 TYR TYR A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 ILE 77 76 76 ILE ILE A . n A 1 78 PRO 78 77 77 PRO PRO A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 LYS 81 80 80 LYS LYS A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 GLN 86 85 85 GLN GLN A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 MSE 97 96 96 MSE MSE A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 MSE 99 98 98 MSE MSE A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 ASN 102 101 101 ASN ASN A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 PHE 109 108 108 PHE PHE A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 GLU 121 120 120 GLU GLU A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 ASN 128 127 127 ASN ASN A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 SER 130 129 129 SER SER A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 ASN 134 133 133 ASN ASN A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 GLU 146 145 145 GLU GLU A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 ILE 152 151 151 ILE ILE A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 SER 155 154 154 SER SER A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 GLY 160 159 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 160 1 CL CL A . C 3 SO4 1 161 2 SO4 SO4 A . D 4 HOH 1 162 3 HOH HOH A . D 4 HOH 2 163 4 HOH HOH A . D 4 HOH 3 164 5 HOH HOH A . D 4 HOH 4 165 6 HOH HOH A . D 4 HOH 5 166 7 HOH HOH A . D 4 HOH 6 167 8 HOH HOH A . D 4 HOH 7 168 9 HOH HOH A . D 4 HOH 8 169 10 HOH HOH A . D 4 HOH 9 170 11 HOH HOH A . D 4 HOH 10 171 12 HOH HOH A . D 4 HOH 11 172 13 HOH HOH A . D 4 HOH 12 173 14 HOH HOH A . D 4 HOH 13 174 15 HOH HOH A . D 4 HOH 14 175 16 HOH HOH A . D 4 HOH 15 176 17 HOH HOH A . D 4 HOH 16 177 18 HOH HOH A . D 4 HOH 17 178 19 HOH HOH A . D 4 HOH 18 179 20 HOH HOH A . D 4 HOH 19 180 21 HOH HOH A . D 4 HOH 20 181 22 HOH HOH A . D 4 HOH 21 182 23 HOH HOH A . D 4 HOH 22 183 24 HOH HOH A . D 4 HOH 23 184 25 HOH HOH A . D 4 HOH 24 185 26 HOH HOH A . D 4 HOH 25 186 27 HOH HOH A . D 4 HOH 26 187 28 HOH HOH A . D 4 HOH 27 188 29 HOH HOH A . D 4 HOH 28 189 30 HOH HOH A . D 4 HOH 29 190 31 HOH HOH A . D 4 HOH 30 191 32 HOH HOH A . D 4 HOH 31 192 33 HOH HOH A . D 4 HOH 32 193 34 HOH HOH A . D 4 HOH 33 194 35 HOH HOH A . D 4 HOH 34 195 36 HOH HOH A . D 4 HOH 35 196 37 HOH HOH A . D 4 HOH 36 197 38 HOH HOH A . D 4 HOH 37 198 39 HOH HOH A . D 4 HOH 38 199 40 HOH HOH A . D 4 HOH 39 200 41 HOH HOH A . D 4 HOH 40 201 42 HOH HOH A . D 4 HOH 41 202 43 HOH HOH A . D 4 HOH 42 203 44 HOH HOH A . D 4 HOH 43 204 45 HOH HOH A . D 4 HOH 44 205 46 HOH HOH A . D 4 HOH 45 206 47 HOH HOH A . D 4 HOH 46 207 48 HOH HOH A . D 4 HOH 47 208 49 HOH HOH A . D 4 HOH 48 209 50 HOH HOH A . D 4 HOH 49 210 51 HOH HOH A . D 4 HOH 50 211 52 HOH HOH A . D 4 HOH 51 212 53 HOH HOH A . D 4 HOH 52 213 54 HOH HOH A . D 4 HOH 53 214 55 HOH HOH A . D 4 HOH 54 215 56 HOH HOH A . D 4 HOH 55 216 57 HOH HOH A . D 4 HOH 56 217 58 HOH HOH A . D 4 HOH 57 218 59 HOH HOH A . D 4 HOH 58 219 60 HOH HOH A . D 4 HOH 59 220 61 HOH HOH A . D 4 HOH 60 221 62 HOH HOH A . D 4 HOH 61 222 63 HOH HOH A . D 4 HOH 62 223 64 HOH HOH A . D 4 HOH 63 224 65 HOH HOH A . D 4 HOH 64 225 66 HOH HOH A . D 4 HOH 65 226 67 HOH HOH A . D 4 HOH 66 227 68 HOH HOH A . D 4 HOH 67 228 69 HOH HOH A . D 4 HOH 68 229 70 HOH HOH A . D 4 HOH 69 230 71 HOH HOH A . D 4 HOH 70 231 72 HOH HOH A . D 4 HOH 71 232 73 HOH HOH A . D 4 HOH 72 233 74 HOH HOH A . D 4 HOH 73 234 75 HOH HOH A . D 4 HOH 74 235 76 HOH HOH A . D 4 HOH 75 236 77 HOH HOH A . D 4 HOH 76 237 78 HOH HOH A . D 4 HOH 77 238 79 HOH HOH A . D 4 HOH 78 239 80 HOH HOH A . D 4 HOH 79 240 81 HOH HOH A . D 4 HOH 80 241 82 HOH HOH A . D 4 HOH 81 242 83 HOH HOH A . D 4 HOH 82 243 84 HOH HOH A . D 4 HOH 83 244 85 HOH HOH A . D 4 HOH 84 245 86 HOH HOH A . D 4 HOH 85 246 87 HOH HOH A . D 4 HOH 86 247 88 HOH HOH A . D 4 HOH 87 248 89 HOH HOH A . D 4 HOH 88 249 90 HOH HOH A . D 4 HOH 89 250 91 HOH HOH A . D 4 HOH 90 251 92 HOH HOH A . D 4 HOH 91 252 93 HOH HOH A . D 4 HOH 92 253 94 HOH HOH A . D 4 HOH 93 254 95 HOH HOH A . D 4 HOH 94 255 96 HOH HOH A . D 4 HOH 95 256 97 HOH HOH A . D 4 HOH 96 257 98 HOH HOH A . D 4 HOH 97 258 99 HOH HOH A . D 4 HOH 98 259 100 HOH HOH A . D 4 HOH 99 260 101 HOH HOH A . D 4 HOH 100 261 102 HOH HOH A . D 4 HOH 101 262 103 HOH HOH A . D 4 HOH 102 263 104 HOH HOH A . D 4 HOH 103 264 105 HOH HOH A . D 4 HOH 104 265 106 HOH HOH A . D 4 HOH 105 266 107 HOH HOH A . D 4 HOH 106 267 108 HOH HOH A . D 4 HOH 107 268 109 HOH HOH A . D 4 HOH 108 269 110 HOH HOH A . D 4 HOH 109 270 111 HOH HOH A . D 4 HOH 110 271 112 HOH HOH A . D 4 HOH 111 272 113 HOH HOH A . D 4 HOH 112 273 114 HOH HOH A . D 4 HOH 113 274 115 HOH HOH A . D 4 HOH 114 275 116 HOH HOH A . D 4 HOH 115 276 117 HOH HOH A . D 4 HOH 116 277 118 HOH HOH A . D 4 HOH 117 278 119 HOH HOH A . D 4 HOH 118 279 120 HOH HOH A . D 4 HOH 119 280 121 HOH HOH A . D 4 HOH 120 281 122 HOH HOH A . D 4 HOH 121 282 123 HOH HOH A . D 4 HOH 122 283 124 HOH HOH A . D 4 HOH 123 284 125 HOH HOH A . D 4 HOH 124 285 126 HOH HOH A . D 4 HOH 125 286 127 HOH HOH A . D 4 HOH 126 287 128 HOH HOH A . D 4 HOH 127 288 129 HOH HOH A . D 4 HOH 128 289 130 HOH HOH A . D 4 HOH 129 290 131 HOH HOH A . D 4 HOH 130 291 132 HOH HOH A . D 4 HOH 131 292 133 HOH HOH A . D 4 HOH 132 293 134 HOH HOH A . D 4 HOH 133 294 135 HOH HOH A . D 4 HOH 134 295 136 HOH HOH A . D 4 HOH 135 296 137 HOH HOH A . D 4 HOH 136 297 138 HOH HOH A . D 4 HOH 137 298 139 HOH HOH A . D 4 HOH 138 299 140 HOH HOH A . D 4 HOH 139 300 141 HOH HOH A . D 4 HOH 140 301 142 HOH HOH A . D 4 HOH 141 302 143 HOH HOH A . D 4 HOH 142 303 144 HOH HOH A . D 4 HOH 143 304 145 HOH HOH A . D 4 HOH 144 305 146 HOH HOH A . D 4 HOH 145 306 147 HOH HOH A . D 4 HOH 146 307 148 HOH HOH A . D 4 HOH 147 308 149 HOH HOH A . D 4 HOH 148 309 150 HOH HOH A . D 4 HOH 149 310 151 HOH HOH A . D 4 HOH 150 311 152 HOH HOH A . D 4 HOH 151 312 153 HOH HOH A . D 4 HOH 152 313 154 HOH HOH A . D 4 HOH 153 314 155 HOH HOH A . D 4 HOH 154 315 156 HOH HOH A . D 4 HOH 155 316 157 HOH HOH A . D 4 HOH 156 317 158 HOH HOH A . D 4 HOH 157 318 159 HOH HOH A . D 4 HOH 158 319 160 HOH HOH A . D 4 HOH 159 320 161 HOH HOH A . D 4 HOH 160 321 162 HOH HOH A . D 4 HOH 161 322 163 HOH HOH A . D 4 HOH 162 323 164 HOH HOH A . D 4 HOH 163 324 165 HOH HOH A . D 4 HOH 164 325 167 HOH HOH A . D 4 HOH 165 326 168 HOH HOH A . D 4 HOH 166 327 169 HOH HOH A . D 4 HOH 167 328 170 HOH HOH A . D 4 HOH 168 329 171 HOH HOH A . D 4 HOH 169 330 172 HOH HOH A . D 4 HOH 170 331 173 HOH HOH A . D 4 HOH 171 332 174 HOH HOH A . D 4 HOH 172 333 175 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 97 A MSE 96 ? MET SELENOMETHIONINE 3 A MSE 99 A MSE 98 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 171 ? D HOH . 2 1 A HOH 199 ? D HOH . 3 1 A HOH 200 ? D HOH . 4 1 A HOH 227 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly_auth_evidence 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_ref_seq_dif.details' 7 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 30.0119 _pdbx_refine_tls.origin_y 19.1068 _pdbx_refine_tls.origin_z 1.7073 _pdbx_refine_tls.T[1][1] -0.0596 _pdbx_refine_tls.T[2][2] -0.0827 _pdbx_refine_tls.T[3][3] -0.0819 _pdbx_refine_tls.T[1][2] 0.0317 _pdbx_refine_tls.T[1][3] -0.0071 _pdbx_refine_tls.T[2][3] 0.0325 _pdbx_refine_tls.L[1][1] 3.4547 _pdbx_refine_tls.L[2][2] 0.4140 _pdbx_refine_tls.L[3][3] 1.4191 _pdbx_refine_tls.L[1][2] 0.4112 _pdbx_refine_tls.L[1][3] 0.3844 _pdbx_refine_tls.L[2][3] 0.1322 _pdbx_refine_tls.S[1][1] -0.0854 _pdbx_refine_tls.S[2][2] 0.0859 _pdbx_refine_tls.S[3][3] -0.0005 _pdbx_refine_tls.S[1][2] 0.0228 _pdbx_refine_tls.S[1][3] -0.3628 _pdbx_refine_tls.S[2][3] 0.1361 _pdbx_refine_tls.S[2][1] -0.0097 _pdbx_refine_tls.S[3][1] -0.0146 _pdbx_refine_tls.S[3][2] -0.0179 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 159 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 158 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 SOLVE . ? ? ? ? phasing ? ? ? 8 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 127 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -129.00 _pdbx_validate_torsion.psi -167.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 41 ? CD ? A GLU 42 CD 2 1 Y 1 A GLU 41 ? OE1 ? A GLU 42 OE1 3 1 Y 1 A GLU 41 ? OE2 ? A GLU 42 OE2 4 1 Y 1 A LYS 94 ? NZ ? A LYS 95 NZ 5 1 Y 1 A LYS 131 ? CD ? A LYS 132 CD 6 1 Y 1 A LYS 131 ? CE ? A LYS 132 CE 7 1 Y 1 A LYS 131 ? NZ ? A LYS 132 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 159 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 160 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SULFATE ION' SO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #