HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-SEP-06 2IDA TITLE SOLUTION NMR STRUCTURE OF PROTEIN RPA1320 FROM RHODOPSEUDOMONAS TITLE 2 PALUSTRIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RPT3; TITLE 3 ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET RP1313. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA1320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3(GOLD); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: P11 KEYWDS ZINC BINDING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,J.A.LUKIN,M.KARRA,A.GUTMANAS,V.GUIDO,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 29-MAY-24 2IDA 1 REMARK REVDAT 3 09-MAR-22 2IDA 1 REMARK LINK REVDAT 2 24-FEB-09 2IDA 1 VERSN REVDAT 1 24-OCT-06 2IDA 0 JRNL AUTH A.LEMAK,A.YEE,J.A.LUKIN,M.KARRA,A.GUTMANAS,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF RPA1320 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 2123 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 89 DIHEDRAL ANGLE RESTRAINTS, AND REMARK 3 14 HYDROGEN BONDS RESTRAINTS REMARK 4 REMARK 4 2IDA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039439. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 250 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM RPA1320, U-15N,13C: 10MM REMARK 210 TRIS, 250MM NACL, 1MM REMARK 210 BENZAMIDINE, 10 MM DTT, 10 MM REMARK 210 ZNSO4, 0.012 NAN3, 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ICP AES ASSAY SUGGESTED 2.3 ZINC ATOMS PER PROTEIN REMARK 210 MOLECULE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 23 HZ2 LYS A 26 1.60 REMARK 500 HD1 HIS A 33 OD2 ASP A 70 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 32 -64.28 -90.55 REMARK 500 1 THR A 39 -73.07 -129.17 REMARK 500 2 THR A 39 -72.28 -103.85 REMARK 500 2 PRO A 72 28.15 -73.29 REMARK 500 3 THR A 2 -62.13 -103.42 REMARK 500 3 ARG A 38 5.92 -69.17 REMARK 500 3 PRO A 72 42.84 -71.99 REMARK 500 3 TYR A 101 -64.13 -107.57 REMARK 500 4 VAL A 32 -67.14 -91.40 REMARK 500 4 ARG A 38 8.67 -69.10 REMARK 500 4 CYS A 40 -3.60 -142.24 REMARK 500 4 PRO A 72 37.33 -78.89 REMARK 500 5 ARG A 38 36.80 -82.95 REMARK 500 5 THR A 39 -62.67 -140.59 REMARK 500 6 MET A 3 -91.49 54.69 REMARK 500 6 PRO A 16 107.80 -55.64 REMARK 500 6 VAL A 32 -66.89 -90.44 REMARK 500 6 THR A 39 -61.10 -98.88 REMARK 500 6 PRO A 72 35.80 -71.21 REMARK 500 6 LEU A 87 23.78 -140.46 REMARK 500 7 GLU A 22 -70.36 -38.15 REMARK 500 7 CYS A 40 -0.53 -142.84 REMARK 500 7 PRO A 72 44.30 -72.74 REMARK 500 8 VAL A 32 -64.65 -91.07 REMARK 500 8 CYS A 40 -6.54 -142.85 REMARK 500 8 CYS A 46 -173.26 -68.99 REMARK 500 9 GLU A 22 90.94 -66.49 REMARK 500 9 GLU A 23 -65.50 167.01 REMARK 500 9 PRO A 30 -166.84 -79.14 REMARK 500 9 VAL A 32 -66.83 -94.50 REMARK 500 10 CYS A 5 177.27 179.44 REMARK 500 10 VAL A 32 -74.04 -106.26 REMARK 500 10 TYR A 69 -62.18 -91.89 REMARK 500 10 PRO A 72 84.57 -69.60 REMARK 500 11 THR A 2 -168.11 -126.72 REMARK 500 11 ARG A 38 38.86 -81.90 REMARK 500 11 THR A 39 -66.81 -141.74 REMARK 500 11 LYS A 52 74.24 44.70 REMARK 500 11 GLU A 73 -62.58 -125.01 REMARK 500 12 ARG A 38 36.31 -86.65 REMARK 500 12 THR A 39 -67.57 -139.60 REMARK 500 13 THR A 2 -80.97 -121.90 REMARK 500 13 PRO A 72 39.67 -71.68 REMARK 500 14 PRO A 72 49.34 -78.13 REMARK 500 14 PRO A 99 108.44 -59.74 REMARK 500 15 VAL A 32 -64.81 -102.12 REMARK 500 15 ARG A 38 6.66 -69.36 REMARK 500 15 PRO A 72 25.17 -70.81 REMARK 500 16 MET A 3 145.49 -170.94 REMARK 500 16 PRO A 30 -169.05 -79.26 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 HIS A 7 ND1 107.3 REMARK 620 3 CYS A 78 SG 109.6 105.9 REMARK 620 4 ASP A 81 OD1 124.6 114.9 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 109.2 REMARK 620 3 HIS A 57 NE2 106.8 108.9 REMARK 620 4 HIS A 63 ND1 108.9 108.9 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RPT3 RELATED DB: TARGETDB DBREF 2IDA A 1 102 UNP Q6NA67 Q6NA67_RHOPA 1 102 SEQRES 1 A 102 MET THR MET GLY CYS ARG HIS VAL ALA GLY ILE ARG THR SEQRES 2 A 102 VAL THR PRO SER ALA LEU GLY CYS GLU GLU CYS LEU LYS SEQRES 3 A 102 ILE GLY SER PRO TRP VAL HIS LEU ARG ILE CYS ARG THR SEQRES 4 A 102 CYS GLY HIS VAL GLY CYS CYS ASP ASP SER PRO HIS LYS SEQRES 5 A 102 HIS ALA THR ARG HIS PHE HIS ALA THR GLY HIS PRO ILE SEQRES 6 A 102 ILE GLU GLY TYR ASP PRO PRO GLU GLY TRP GLY TRP CYS SEQRES 7 A 102 TYR VAL ASP GLU VAL MET PHE ASP LEU SER ASP ARG MET SEQRES 8 A 102 THR PRO HIS ASN GLY PRO ILE PRO ARG TYR VAL HET ZN A 103 1 HET ZN A 104 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 5 ILE A 11 5 7 HELIX 2 2 CYS A 21 LYS A 26 1 6 HELIX 3 3 LYS A 52 GLY A 62 1 11 SHEET 1 A 4 ARG A 35 CYS A 37 0 SHEET 2 A 4 ILE A 65 GLY A 68 -1 O GLU A 67 N ILE A 36 SHEET 3 A 4 TRP A 75 CYS A 78 -1 O TRP A 77 N ILE A 66 SHEET 4 A 4 MET A 84 ASP A 86 -1 O PHE A 85 N GLY A 76 LINK SG CYS A 5 ZN ZN A 103 1555 1555 2.35 LINK ND1 HIS A 7 ZN ZN A 103 1555 1555 2.10 LINK SG CYS A 37 ZN ZN A 104 1555 1555 2.34 LINK SG CYS A 40 ZN ZN A 104 1555 1555 2.36 LINK NE2 HIS A 57 ZN ZN A 104 1555 1555 2.08 LINK ND1 HIS A 63 ZN ZN A 104 1555 1555 2.11 LINK SG CYS A 78 ZN ZN A 103 1555 1555 2.36 LINK OD1 ASP A 81 ZN ZN A 103 1555 1555 1.86 SITE 1 AC1 4 CYS A 5 HIS A 7 CYS A 78 ASP A 81 SITE 1 AC2 4 CYS A 37 CYS A 40 HIS A 57 HIS A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1