HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-SEP-06 2IG8 TITLE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION PA3499 FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PA3499; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA3499; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN PA3499, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 21-FEB-24 2IG8 1 REMARK REVDAT 3 13-JUL-11 2IG8 1 VERSN REVDAT 2 24-FEB-09 2IG8 1 VERSN REVDAT 1 24-OCT-06 2IG8 0 JRNL AUTH R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN PA3499 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 476 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3237 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2118 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4401 ; 1.428 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5160 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 7.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;30.037 ;23.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;15.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;24.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 649 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 676 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2355 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1526 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1770 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 377 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2677 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 869 ; 0.177 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3347 ; 1.083 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 2.274 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 3.240 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 9 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 142 REMARK 3 RESIDUE RANGE : B 1 B 50 REMARK 3 RESIDUE RANGE : B 51 B 100 REMARK 3 RESIDUE RANGE : B 101 B 143 REMARK 3 RESIDUE RANGE : C 1 C 50 REMARK 3 RESIDUE RANGE : C 51 C 100 REMARK 3 RESIDUE RANGE : C 101 C 142 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5170 0.8820 0.0960 REMARK 3 T TENSOR REMARK 3 T11: -0.1514 T22: 0.2897 REMARK 3 T33: -0.1084 T12: -0.0168 REMARK 3 T13: -0.0077 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0356 L22: 0.4082 REMARK 3 L33: 1.9165 L12: -0.2399 REMARK 3 L13: -0.3884 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.3324 S13: 0.0036 REMARK 3 S21: 0.0019 S22: 0.0745 S23: -0.0567 REMARK 3 S31: -0.0243 S32: 0.7555 S33: -0.0712 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 3.5M SODIUM FORMATE, 4% REMARK 280 MPD, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.84100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.92050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.76150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.84100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.76150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.92050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS TRIMER. THE DEPOSITED MOLECULES A, B REMARK 300 AND C REPRESENT THE TRIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 268 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 149 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 160 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 174 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 255 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 143 REMARK 465 ALA A 144 REMARK 465 ALA B 144 REMARK 465 GLU C 143 REMARK 465 ALA C 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 168 O HOH A 298 1.95 REMARK 500 O HOH A 195 O HOH A 299 2.01 REMARK 500 O HOH B 229 O HOH B 327 2.12 REMARK 500 O HOH C 221 O HOH C 270 2.13 REMARK 500 O HOH C 155 O HOH C 256 2.15 REMARK 500 O HOH A 192 O HOH A 301 2.15 REMARK 500 O HOH A 277 O HOH A 288 2.18 REMARK 500 O HOH A 177 O HOH A 260 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 250 O HOH B 330 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 105 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 GLN C 105 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 49 48.06 -142.84 REMARK 500 PHE B 102 30.74 -98.81 REMARK 500 ASN C 140 73.29 -118.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 104 GLN A 105 -70.79 REMARK 500 GLY C 104 GLN C 105 -54.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5914 RELATED DB: TARGETDB DBREF 2IG8 A 1 144 UNP Q9HYB0 Q9HYB0_PSEAE 1 144 DBREF 2IG8 B 1 144 UNP Q9HYB0 Q9HYB0_PSEAE 1 144 DBREF 2IG8 C 1 144 UNP Q9HYB0 Q9HYB0_PSEAE 1 144 SEQRES 1 A 144 MET THR ALA VAL ARG ARG ILE ARG ALA ALA ALA LEU PRO SEQRES 2 A 144 ASP LEU PRO ASP ALA SER TRP SER ASN ALA LEU LEU VAL SEQRES 3 A 144 GLY GLU GLU LEU VAL MET SER GLY MET THR ALA HIS PRO SEQRES 4 A 144 ALA THR ARG GLN ALA ALA GLU ARG GLY ALA ALA LEU ASP SEQRES 5 A 144 ALA HIS ALA GLN ALA LEU VAL VAL LEU GLY LYS VAL LYS SEQRES 6 A 144 ALA LEU LEU GLU ALA ALA GLY GLY HIS VAL GLY ASN LEU SEQRES 7 A 144 TYR LYS LEU ASN VAL TYR VAL THR ARG ILE ALA ASP LYS SEQRES 8 A 144 ASP ALA ILE GLY ARG ALA ARG GLN GLU PHE PHE ALA GLY SEQRES 9 A 144 GLN GLY THR PHE PRO ALA SER THR LEU VAL GLU VAL SER SEQRES 10 A 144 GLY LEU VAL PHE PRO GLU LEU LEU VAL GLU ILE ASP ALA SEQRES 11 A 144 TRP ALA ARG LEU ASP ILE ASP LEU ALA ASN CYS ASP GLU SEQRES 12 A 144 ALA SEQRES 1 B 144 MET THR ALA VAL ARG ARG ILE ARG ALA ALA ALA LEU PRO SEQRES 2 B 144 ASP LEU PRO ASP ALA SER TRP SER ASN ALA LEU LEU VAL SEQRES 3 B 144 GLY GLU GLU LEU VAL MET SER GLY MET THR ALA HIS PRO SEQRES 4 B 144 ALA THR ARG GLN ALA ALA GLU ARG GLY ALA ALA LEU ASP SEQRES 5 B 144 ALA HIS ALA GLN ALA LEU VAL VAL LEU GLY LYS VAL LYS SEQRES 6 B 144 ALA LEU LEU GLU ALA ALA GLY GLY HIS VAL GLY ASN LEU SEQRES 7 B 144 TYR LYS LEU ASN VAL TYR VAL THR ARG ILE ALA ASP LYS SEQRES 8 B 144 ASP ALA ILE GLY ARG ALA ARG GLN GLU PHE PHE ALA GLY SEQRES 9 B 144 GLN GLY THR PHE PRO ALA SER THR LEU VAL GLU VAL SER SEQRES 10 B 144 GLY LEU VAL PHE PRO GLU LEU LEU VAL GLU ILE ASP ALA SEQRES 11 B 144 TRP ALA ARG LEU ASP ILE ASP LEU ALA ASN CYS ASP GLU SEQRES 12 B 144 ALA SEQRES 1 C 144 MET THR ALA VAL ARG ARG ILE ARG ALA ALA ALA LEU PRO SEQRES 2 C 144 ASP LEU PRO ASP ALA SER TRP SER ASN ALA LEU LEU VAL SEQRES 3 C 144 GLY GLU GLU LEU VAL MET SER GLY MET THR ALA HIS PRO SEQRES 4 C 144 ALA THR ARG GLN ALA ALA GLU ARG GLY ALA ALA LEU ASP SEQRES 5 C 144 ALA HIS ALA GLN ALA LEU VAL VAL LEU GLY LYS VAL LYS SEQRES 6 C 144 ALA LEU LEU GLU ALA ALA GLY GLY HIS VAL GLY ASN LEU SEQRES 7 C 144 TYR LYS LEU ASN VAL TYR VAL THR ARG ILE ALA ASP LYS SEQRES 8 C 144 ASP ALA ILE GLY ARG ALA ARG GLN GLU PHE PHE ALA GLY SEQRES 9 C 144 GLN GLY THR PHE PRO ALA SER THR LEU VAL GLU VAL SER SEQRES 10 C 144 GLY LEU VAL PHE PRO GLU LEU LEU VAL GLU ILE ASP ALA SEQRES 11 C 144 TRP ALA ARG LEU ASP ILE ASP LEU ALA ASN CYS ASP GLU SEQRES 12 C 144 ALA FORMUL 4 HOH *476(H2 O) HELIX 1 1 PRO A 39 ARG A 47 1 9 HELIX 2 2 ASP A 52 ALA A 71 1 20 HELIX 3 3 HIS A 74 GLY A 76 5 3 HELIX 4 4 ARG A 87 ALA A 89 5 3 HELIX 5 5 ASP A 90 PHE A 102 1 13 HELIX 6 6 ASP A 137 CYS A 141 5 5 HELIX 7 7 PRO B 39 ARG B 47 1 9 HELIX 8 8 ASP B 52 ALA B 71 1 20 HELIX 9 9 HIS B 74 GLY B 76 5 3 HELIX 10 10 ARG B 87 ALA B 89 5 3 HELIX 11 11 ASP B 90 PHE B 102 1 13 HELIX 12 12 ASP B 137 ASP B 142 5 6 HELIX 13 13 PRO C 39 ARG C 47 1 9 HELIX 14 14 ASP C 52 ALA C 71 1 20 HELIX 15 15 HIS C 74 GLY C 76 5 3 HELIX 16 16 ARG C 87 ALA C 89 5 3 HELIX 17 17 ASP C 90 PHE C 102 1 13 HELIX 18 18 ASP C 137 CYS C 141 5 5 SHEET 1 A 6 VAL A 4 ARG A 6 0 SHEET 2 A 6 ALA A 23 VAL A 26 -1 O LEU A 25 N ARG A 5 SHEET 3 A 6 GLU A 29 MET A 32 -1 O GLU A 29 N VAL A 26 SHEET 4 A 6 VAL A 126 ARG A 133 -1 O ALA A 132 N LEU A 30 SHEET 5 A 6 LEU A 78 VAL A 85 -1 N ASN A 82 O ASP A 129 SHEET 6 A 6 ALA A 110 GLU A 115 1 O THR A 112 N VAL A 83 SHEET 1 B 5 VAL B 4 ARG B 6 0 SHEET 2 B 5 ALA B 23 VAL B 26 -1 O LEU B 25 N ARG B 5 SHEET 3 B 5 GLU B 29 MET B 32 -1 O GLU B 29 N VAL B 26 SHEET 4 B 5 VAL B 126 ARG B 133 -1 O ALA B 132 N LEU B 30 SHEET 5 B 5 MET B 35 THR B 36 -1 N MET B 35 O ILE B 128 SHEET 1 C 6 VAL B 4 ARG B 6 0 SHEET 2 C 6 ALA B 23 VAL B 26 -1 O LEU B 25 N ARG B 5 SHEET 3 C 6 GLU B 29 MET B 32 -1 O GLU B 29 N VAL B 26 SHEET 4 C 6 VAL B 126 ARG B 133 -1 O ALA B 132 N LEU B 30 SHEET 5 C 6 LEU B 78 VAL B 85 -1 N ASN B 82 O ASP B 129 SHEET 6 C 6 ALA B 110 GLU B 115 1 O THR B 112 N VAL B 83 SHEET 1 D 6 VAL C 4 ARG C 6 0 SHEET 2 D 6 ALA C 23 VAL C 26 -1 O LEU C 25 N ARG C 5 SHEET 3 D 6 GLU C 29 MET C 32 -1 O GLU C 29 N VAL C 26 SHEET 4 D 6 VAL C 126 ARG C 133 -1 O ALA C 132 N LEU C 30 SHEET 5 D 6 LEU C 78 VAL C 85 -1 N ASN C 82 O ASP C 129 SHEET 6 D 6 ALA C 110 GLU C 115 1 O THR C 112 N VAL C 83 CISPEP 1 HIS A 38 PRO A 39 0 5.65 CISPEP 2 HIS B 38 PRO B 39 0 3.76 CISPEP 3 HIS C 38 PRO C 39 0 5.08 CRYST1 100.191 100.191 131.682 90.00 90.00 90.00 P 41 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007594 0.00000