HEADER IMMUNOGLOBULIN 21-MAR-91 2IGF TITLE CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS COMPLEX WITH TITLE 2 PEPTIDE ANTIGEN AT 2.8 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA B13I2 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA B13I2 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PEPTIDE (RESIDUES 69-87 OF MYOHEMERYTHRIN); COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: A/J; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: A/J; SOURCE 11 MOL_ID: 3 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,I.A.WILSON REVDAT 7 30-OCT-24 2IGF 1 HETSYN SHEET REVDAT 6 29-JUL-20 2IGF 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 13-JUL-11 2IGF 1 VERSN REVDAT 4 25-AUG-09 2IGF 1 SOURCE REVDAT 3 24-FEB-09 2IGF 1 VERSN REVDAT 2 01-APR-03 2IGF 1 JRNL REVDAT 1 15-APR-92 2IGF 0 JRNL AUTH R.L.STANFIELD,T.M.FIESER,R.A.LERNER,I.A.WILSON JRNL TITL CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS JRNL TITL 2 COMPLEX WITH PEPTIDE ANTIGEN AT 2.8 A. JRNL REF SCIENCE V. 248 712 1990 JRNL REFN ISSN 0036-8075 JRNL PMID 2333521 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.A.STURA,R.L.STANFIELD,T.M.FIESER,R.S.BALDERAS,L.R.SMITH, REMARK 1 AUTH 2 R.A.LERNER,I.A.WILSON REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA AND PRIMARY SEQUENCE FOR REMARK 1 TITL 2 ANTI-PEPTIDE FAB' B13I2 AND ITS COMPLEX WITH THE C-HELIX REMARK 1 TITL 3 PEPTIDE FROM MYOHEMERYTHRIN REMARK 1 REF J.BIOL.CHEM. V. 264 15721 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.980 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.75000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.75000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.75000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET P 76 REMARK 465 HIS P 77 REMARK 465 LYS P 78 REMARK 465 ASP P 79 REMARK 465 PHE P 80 REMARK 465 LEU P 81 REMARK 465 GLU P 82 REMARK 465 LYS P 83 REMARK 465 ILE P 84 REMARK 465 GLY P 85 REMARK 465 GLY P 86 REMARK 465 LEU P 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 213 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.082 REMARK 500 HIS H 172 NE2 HIS H 172 CD2 -0.073 REMARK 500 HIS H 212 NE2 HIS H 212 CD2 -0.072 REMARK 500 HIS P 73 NE2 HIS P 73 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET L 4 CG - SD - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 TYR L 32 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP L 35 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR L 36 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 LYS L 50 CB - CG - CD ANGL. DEV. = -19.1 DEGREES REMARK 500 VAL L 51 CG1 - CB - CG2 ANGL. DEV. = -13.7 DEGREES REMARK 500 VAL L 58 CG1 - CB - CG2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG L 61 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG L 77 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG L 77 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU L 83 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 VAL L 85 CG1 - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL L 94 CG1 - CB - CG2 ANGL. DEV. = -13.2 DEGREES REMARK 500 TYR L 140 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP L 148 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP L 148 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP L 163 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP L 163 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG L 211 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU H 4 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG H 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG H 31 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU H 45 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG H 71 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG H 71 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG H 75 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG H 75 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 MET H 82 CG - SD - CE ANGL. DEV. = -16.3 DEGREES REMARK 500 TYR H 90 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR H 102 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP H 103 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP H 103 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 LEU H 140 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 TRP H 157 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL H 205 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG H 228 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS H 233 CA - CB - SG ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 2 116.11 -160.62 REMARK 500 ASP L 17 -164.47 -105.47 REMARK 500 PRO L 40 88.64 -0.13 REMARK 500 VAL L 51 -57.83 71.62 REMARK 500 PRO L 59 153.80 -45.76 REMARK 500 ARG L 77 72.75 65.38 REMARK 500 GLU L 81 31.70 -83.25 REMARK 500 PRO L 96 109.67 -59.82 REMARK 500 PRO L 113 174.99 -55.21 REMARK 500 THR L 126 35.47 -78.71 REMARK 500 SER L 127 29.95 -158.56 REMARK 500 ALA L 130 113.10 -163.82 REMARK 500 ASN L 138 61.59 72.87 REMARK 500 ASP L 151 -15.51 87.24 REMARK 500 GLU L 154 -164.36 60.83 REMARK 500 ARG L 155 -175.38 173.61 REMARK 500 ASP L 170 -32.73 -157.72 REMARK 500 LEU L 181 -169.45 -125.68 REMARK 500 ASN L 190 -60.43 -126.90 REMARK 500 ARG L 211 -43.03 -13.97 REMARK 500 ASN H 73 4.31 -64.93 REMARK 500 ASN H 76 89.10 -28.31 REMARK 500 SER H 82A -154.26 -104.13 REMARK 500 SER H 82B 53.88 -9.77 REMARK 500 ALA H 88 177.56 164.63 REMARK 500 PRO H 99 49.32 -73.13 REMARK 500 PRO H 126 -30.57 -33.88 REMARK 500 SER H 128 -152.56 -84.30 REMARK 500 ALA H 129 10.18 -49.96 REMARK 500 ALA H 130 -73.70 70.08 REMARK 500 GLN H 133 125.40 77.46 REMARK 500 ASN H 135 76.31 -162.19 REMARK 500 SER H 136 -46.05 60.88 REMARK 500 PHE H 148 132.82 -176.24 REMARK 500 SER H 163 5.43 52.99 REMARK 500 SER H 167 -35.12 -133.36 REMARK 500 PRO H 175 141.04 -35.56 REMARK 500 GLN H 179 -112.17 -95.28 REMARK 500 ASP H 183 5.96 42.53 REMARK 500 SER H 196 -54.08 -158.98 REMARK 500 PRO H 198 -176.57 -67.61 REMARK 500 ARG H 199 -47.83 65.47 REMARK 500 PRO H 200 -118.98 -31.38 REMARK 500 PRO H 213 -67.22 -20.98 REMARK 500 SER H 216 -99.60 59.16 REMARK 500 THR H 217 101.99 47.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS L 39 PRO L 40 141.43 REMARK 500 GLU H 150 PRO H 151 42.13 REMARK 500 ARG H 199 PRO H 200 111.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 49 0.07 SIDE CHAIN REMARK 500 TYR L 86 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FAB' FRAGMENT IS NUMBERED BY THE CONVENTION OF E.KABAT REMARK 999 (E.A.KABAT,T.T.WU,M.REID-MILLER,H.M.PERRY,K.S.GOTTESMAN, REMARK 999 SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 4TH ED., REMARK 999 (1987), NATIONAL INSTITUTE OF HEALTH,BETHESDA,MD.). DBREF 2IGF L 1 214 PIR PC4203 PC4203 1 219 DBREF 2IGF H 2 233 PIR S38864 S38864 2 222 DBREF 2IGF P 69 87 UNP P02247 HEMM_THEZO 69 87 SEQADV 2IGF ASN L 26 PIR PC4203 SER 26 CONFLICT SEQADV 2IGF THR L 27A PIR PC4203 SER 28 CONFLICT SEQADV 2IGF LEU L 27C PIR PC4203 VAL 30 CONFLICT SEQADV 2IGF LEU L 27D PIR PC4203 HIS 31 CONFLICT SEQADV 2IGF SER L 27E PIR PC4203 THR 32 CONFLICT SEQADV 2IGF ASP L 28 PIR PC4203 ASN 33 CONFLICT SEQADV 2IGF ASP L 30 PIR PC4203 ASN 35 CONFLICT SEQADV 2IGF PRO L 96 PIR PC4203 ARG 101 CONFLICT SEQADV 2IGF GLN H 3 PIR S38864 LYS 3 CONFLICT SEQADV 2IGF VAL H 5 PIR S38864 LEU 5 CONFLICT SEQADV 2IGF PHE H 27 PIR S38864 LEU 27 CONFLICT SEQADV 2IGF ARG H 31 PIR S38864 SER 31 CONFLICT SEQADV 2IGF CYS H 32 PIR S38864 TYR 32 CONFLICT SEQADV 2IGF ALA H 33 PIR S38864 GLY 33 CONFLICT SEQADV 2IGF THR H 40 PIR S38864 ILE 40 CONFLICT SEQADV 2IGF GLU H 42 PIR S38864 ASP 42 CONFLICT SEQADV 2IGF GLY H 50 PIR S38864 THR 50 CONFLICT SEQADV 2IGF SER H 55 PIR S38864 THR 56 CONFLICT SEQADV 2IGF PHE H 58 PIR S38864 TYR 59 CONFLICT SEQADV 2IGF THR H 62 PIR S38864 SER 63 CONFLICT SEQADV 2IGF ILE H 68 PIR S38864 THR 69 CONFLICT SEQADV 2IGF ASN H 72 PIR S38864 ASP 73 CONFLICT SEQADV 2IGF ARG H 75 PIR S38864 LYS 76 CONFLICT SEQADV 2IGF SER H 79 PIR S38864 TYR 80 CONFLICT SEQADV 2IGF ARG H 83 PIR S38864 LYS 87 CONFLICT SEQADV 2IGF ILE H 89 PIR S38864 MET 93 CONFLICT SEQADV 2IGF THR H 93 PIR S38864 ALA 97 CONFLICT SEQADV 2IGF H PIR S38864 GLN 99 DELETION SEQADV 2IGF TYR H 95 PIR S38864 GLY 100 CONFLICT SEQADV 2IGF SER H 96 PIR S38864 VAL 101 CONFLICT SEQADV 2IGF ASP H 98 PIR S38864 THR 103 CONFLICT SEQADV 2IGF PRO H 99 PIR S38864 MET 104 CONFLICT SEQADV 2IGF PHE H 100 PIR S38864 ILE 105 CONFLICT SEQADV 2IGF TYR H 100B PIR S38864 ARG 106 CONFLICT SEQADV 2IGF ASP H 101 PIR S38864 ALA 108 CONFLICT SEQADV 2IGF THR H 108 PIR S38864 LEU 115 CONFLICT SEQADV 2IGF LEU H 109 PIR S38864 VAL 116 CONFLICT SEQADV 2IGF SER H 113 PIR S38864 ALA 120 CONFLICT SEQADV 2IGF ALA H 114 PIR S38864 GLY 121 CONFLICT SEQADV 2IGF PRO H 198 PIR S38864 THR 194 CONFLICT SEQADV 2IGF ARG H 199 PIR S38864 TRP 195 CONFLICT SEQRES 1 L 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER ASN SEQRES 3 L 219 GLN THR ILE LEU LEU SER ASP GLY ASP THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO PRO THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 221 GLU VAL GLN LEU VAL GLU SER GLY GLY ASP LEU VAL LYS SEQRES 2 H 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR PHE SER ARG CYS ALA MET SER TRP VAL ARG GLN SEQRES 4 H 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA GLY ILE SER SEQRES 5 H 221 SER GLY GLY SER TYR THR PHE TYR PRO ASP THR VAL LYS SEQRES 6 H 221 GLY ARG PHE ILE ILE SER ARG ASN ASN ALA ARG ASN THR SEQRES 7 H 221 LEU SER LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 221 ALA ILE TYR TYR CYS THR ARG TYR SER SER ASP PRO PHE SEQRES 9 H 221 TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SEQRES 10 H 221 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 221 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 221 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 221 LEU SER SER SER VAL THR VAL PRO SER SER PRO ARG PRO SEQRES 16 H 221 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 221 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 P 19 GLU VAL VAL PRO HIS LYS LYS MET HIS LYS ASP PHE LEU SEQRES 2 P 19 GLU LYS ILE GLY GLY LEU MODRES 2IGF ASN L 26 ASN GLYCOSYLATION SITE HET NAG L 600 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 HELIX 1 1 GLU L 79 LEU L 83 5 5 HELIX 2 2 SER L 121 THR L 126 1 6 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 THR H 28 CYS H 32 5 5 HELIX 5 5 ARG H 83 THR H 87 5 5 HELIX 6 6 SER H 163 SER H 165 5 3 HELIX 7 7 PRO H 213 SER H 216 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 GLN L 18 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 A 4 ASP L 70 SER L 76 -1 N PHE L 71 O CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 B 5 ASN L 53 ARG L 54 0 SHEET 2 B 5 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 N TRP L 35 O ILE L 48 SHEET 4 B 5 GLY L 84 GLN L 90 -1 O VAL L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 ASN L 53 ARG L 54 0 SHEET 2 C 6 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 N TRP L 35 O ILE L 48 SHEET 4 C 6 GLY L 84 GLN L 90 -1 O VAL L 85 N GLN L 38 SHEET 5 C 6 THR L 102 ILE L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 SER L 10 VAL L 13 1 N LEU L 11 O LYS L 103 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 ASN L 137 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 MET L 175 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 D 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 E 3 ASN L 145 ILE L 150 0 SHEET 2 E 3 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 3 E 3 ILE L 205 ASN L 210 -1 N ILE L 205 O ALA L 196 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 N SER H 21 O SER H 7 SHEET 3 F 4 THR H 77 MET H 82 -1 N LEU H 78 O CYS H 22 SHEET 4 F 4 PHE H 67 ASN H 72 -1 N ILE H 68 O GLN H 81 SHEET 1 G 4 THR H 57 PHE H 58 0 SHEET 2 G 4 LEU H 45 ILE H 51 -1 O GLY H 50 N PHE H 58 SHEET 3 G 4 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 G 4 ALA H 88 TYR H 95 -1 O ILE H 89 N GLN H 39 SHEET 1 H 6 THR H 57 PHE H 58 0 SHEET 2 H 6 LEU H 45 ILE H 51 -1 O GLY H 50 N PHE H 58 SHEET 3 H 6 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 H 6 ALA H 88 TYR H 95 -1 O ILE H 89 N GLN H 39 SHEET 5 H 6 THR H 107 VAL H 111 -1 O THR H 107 N TYR H 90 SHEET 6 H 6 LEU H 11 VAL H 12 1 N VAL H 12 O THR H 110 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 I 4 TYR H 185 PRO H 194 -1 N TYR H 185 O TYR H 147 SHEET 4 I 4 HIS H 172 THR H 173 -1 O HIS H 172 N SER H 190 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 J 4 TYR H 185 PRO H 194 -1 N TYR H 185 O TYR H 147 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O THR H 186 SHEET 1 K 3 THR H 153 TRP H 157 0 SHEET 2 K 3 VAL H 205 ALA H 211 -1 N ASN H 209 O THR H 156 SHEET 3 K 3 LYS H 218 ILE H 223 -1 N VAL H 219 O VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.00 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.31 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.37 LINK ND2 ASN L 26 C1 NAG L 600 1555 1555 1.45 CISPEP 1 THR L 7 PRO L 8 0 0.10 CISPEP 2 VAL L 94 PRO L 95 0 1.70 CISPEP 3 TYR L 140 PRO L 141 0 -6.60 CISPEP 4 PHE H 148 PRO H 149 0 -5.66 CRYST1 142.500 142.500 101.500 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007018 0.004052 0.000000 0.00000 SCALE2 0.000000 0.008103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009852 0.00000