HEADER TRANSFERASE 28-SEP-06 2IIK TITLE CRYSTAL STRUCTURE OF HUMAN PEROXISOMAL ACETYL-COA ACYL TRANSFERASE 1 TITLE 2 (ACAA1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOACYL-COA THIOLASE, PEROXISOMAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA- KETOTHIOLASE, ACETYL-COA ACYLTRANSFERASE, PEROXISOMAL COMPND 5 3-OXOACYL-COA THIOLASE; COMPND 6 EC: 2.3.1.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACAA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS FATTY ACID METABOLISM, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,C.JOHANSSON,C.SMEE,K.KAVANAGH,A.C.W.PIKE,M.SUNDSTROM, AUTHOR 2 J.WEIGELT,A.EDWARDS,C.H.ARROWSMITH,O.GILEADI,F.GORREC,C.UMEANO,F.VON AUTHOR 3 DELFT,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2IIK 1 SEQADV REVDAT 3 13-JUL-11 2IIK 1 VERSN REVDAT 2 24-FEB-09 2IIK 1 VERSN REVDAT 1 10-OCT-06 2IIK 0 JRNL AUTH E.PAPAGRIGORIOU,C.JOHANSSON,C.SMEE,K.KAVANAGH,A.C.W.PIKE, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,A.EDWARDS,C.H.ARROWSMITH,O.GILEADI, JRNL AUTH 3 F.GORREC,C.UMEANO,F.VON DELFT,U.OPPERMANN, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN PEROXISOMAL ACETYL-COA ACYL JRNL TITL 2 TRANSFERASE 1 (ACAA1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 1.76000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.527 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5718 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3798 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7752 ; 1.402 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9355 ; 1.192 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 782 ; 6.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;34.375 ;24.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 943 ;15.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.936 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 929 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6456 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1038 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1201 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3970 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2903 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3049 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 247 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4009 ; 0.487 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1608 ; 0.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6208 ; 0.733 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1914 ; 1.516 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1544 ; 2.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 47 A 155 3 REMARK 3 1 B 47 B 155 3 REMARK 3 2 A 166 A 231 3 REMARK 3 2 B 166 B 231 3 REMARK 3 3 A 240 A 421 3 REMARK 3 3 B 240 B 421 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2086 ; 0.04 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 2135 ; 0.27 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 2086 ; 0.08 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 2135 ; 0.74 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1548 -7.0898 -20.0680 REMARK 3 T TENSOR REMARK 3 T11: -0.0869 T22: -0.1002 REMARK 3 T33: -0.1023 T12: 0.0085 REMARK 3 T13: 0.0054 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.5671 L22: 0.9494 REMARK 3 L33: 1.8841 L12: -0.0271 REMARK 3 L13: -0.0837 L23: 0.2924 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.1769 S13: 0.0195 REMARK 3 S21: 0.1663 S22: -0.0206 S23: 0.0226 REMARK 3 S31: -0.0733 S32: 0.0174 S33: 0.0495 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 423 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5040 -8.9773 -49.4576 REMARK 3 T TENSOR REMARK 3 T11: -0.0939 T22: -0.0987 REMARK 3 T33: -0.0840 T12: -0.0039 REMARK 3 T13: -0.0251 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.6416 L22: 0.8699 REMARK 3 L33: 1.6313 L12: -0.1882 REMARK 3 L13: -0.2852 L23: -0.1854 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.1493 S13: -0.0469 REMARK 3 S21: -0.1815 S22: -0.0566 S23: 0.0841 REMARK 3 S31: -0.0424 S32: 0.0494 S33: 0.0630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 80.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.660 REMARK 200 R MERGE (I) : 0.10990 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.79 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: 2C7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMONIUM SULPHATE, 0.1M HEPES, 25% REMARK 280 PEG3350., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.57350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.02750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.42250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.02750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.57350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.42250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 ASP A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 PHE A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 MET A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 ARG A 159 REMARK 465 GLY A 160 REMARK 465 ASN A 161 REMARK 465 PRO A 162 REMARK 465 GLY A 424 REMARK 465 ASN A 425 REMARK 465 MET B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 VAL B 17 REMARK 465 ASP B 18 REMARK 465 LEU B 19 REMARK 465 GLY B 20 REMARK 465 ASP B 158 REMARK 465 ARG B 159 REMARK 465 GLY B 160 REMARK 465 ASN B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 50 NE CZ NH1 NH2 REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 LYS A 74 CD CE NZ REMARK 470 GLY A 163 N REMARK 470 ARG A 168 CZ NH1 NH2 REMARK 470 LYS A 174 NZ REMARK 470 ARG A 176 CD NE CZ NH1 NH2 REMARK 470 GLU A 198 CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 238 CE NZ REMARK 470 ARG A 239 NE CZ NH1 NH2 REMARK 470 ARG A 250 NE CZ NH1 NH2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 260 CE NZ REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 ARG A 361 NE CZ NH1 NH2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLN B 32 CD OE1 NE2 REMARK 470 ARG B 50 CZ NH1 NH2 REMARK 470 LYS B 74 CD CE NZ REMARK 470 SER B 167 OG REMARK 470 MET B 170 CE REMARK 470 LYS B 174 CE NZ REMARK 470 ARG B 176 NE CZ NH1 NH2 REMARK 470 ARG B 213 NE CZ NH1 NH2 REMARK 470 LYS B 238 CD CE NZ REMARK 470 ARG B 250 NE CZ NH1 NH2 REMARK 470 GLU B 256 CD OE1 OE2 REMARK 470 LYS B 260 CG CD CE NZ REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LYS B 267 CD CE NZ REMARK 470 ARG B 361 CZ NH1 NH2 REMARK 470 LEU B 376 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 165 CG1 - CB - CG2 ANGL. DEV. = 17.3 DEGREES REMARK 500 ILE B 144 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 122 -127.79 52.48 REMARK 500 ALA A 156 140.88 -39.80 REMARK 500 ASP A 234 -69.28 -28.33 REMARK 500 GLU A 347 64.41 -102.11 REMARK 500 ALA B 33 71.69 -153.69 REMARK 500 GLN B 122 -131.10 56.00 REMARK 500 GLU B 347 64.97 -104.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 424 ASN B 425 124.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 2IIK A 30 424 UNP P09110 THIK_HUMAN 28 424 DBREF 2IIK B 30 424 UNP P09110 THIK_HUMAN 28 424 SEQADV 2IIK MET A 7 UNP P09110 CLONING ARTIFACT SEQADV 2IIK HIS A 8 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS A 9 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS A 10 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS A 11 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS A 12 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS A 13 UNP P09110 EXPRESSION TAG SEQADV 2IIK SER A 14 UNP P09110 CLONING ARTIFACT SEQADV 2IIK SER A 15 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLY A 16 UNP P09110 CLONING ARTIFACT SEQADV 2IIK VAL A 17 UNP P09110 CLONING ARTIFACT SEQADV 2IIK ASP A 18 UNP P09110 CLONING ARTIFACT SEQADV 2IIK LEU A 19 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLY A 20 UNP P09110 CLONING ARTIFACT SEQADV 2IIK THR A 21 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLU A 22 UNP P09110 CLONING ARTIFACT SEQADV 2IIK ASN A 23 UNP P09110 CLONING ARTIFACT SEQADV 2IIK LEU A 24 UNP P09110 CLONING ARTIFACT SEQADV 2IIK TYR A 25 UNP P09110 CLONING ARTIFACT SEQADV 2IIK PHE A 26 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLN A 27 UNP P09110 CLONING ARTIFACT SEQADV 2IIK SER A 28 UNP P09110 CLONING ARTIFACT SEQADV 2IIK MET A 29 UNP P09110 CLONING ARTIFACT SEQADV 2IIK MET B 7 UNP P09110 CLONING ARTIFACT SEQADV 2IIK HIS B 8 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS B 9 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS B 10 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS B 11 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS B 12 UNP P09110 EXPRESSION TAG SEQADV 2IIK HIS B 13 UNP P09110 EXPRESSION TAG SEQADV 2IIK SER B 14 UNP P09110 CLONING ARTIFACT SEQADV 2IIK SER B 15 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLY B 16 UNP P09110 CLONING ARTIFACT SEQADV 2IIK VAL B 17 UNP P09110 CLONING ARTIFACT SEQADV 2IIK ASP B 18 UNP P09110 CLONING ARTIFACT SEQADV 2IIK LEU B 19 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLY B 20 UNP P09110 CLONING ARTIFACT SEQADV 2IIK THR B 21 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLU B 22 UNP P09110 CLONING ARTIFACT SEQADV 2IIK ASN B 23 UNP P09110 CLONING ARTIFACT SEQADV 2IIK LEU B 24 UNP P09110 CLONING ARTIFACT SEQADV 2IIK TYR B 25 UNP P09110 CLONING ARTIFACT SEQADV 2IIK PHE B 26 UNP P09110 CLONING ARTIFACT SEQADV 2IIK GLN B 27 UNP P09110 CLONING ARTIFACT SEQADV 2IIK SER B 28 UNP P09110 CLONING ARTIFACT SEQADV 2IIK MET B 29 UNP P09110 CLONING ARTIFACT SEQRES 1 A 418 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 418 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA PRO GLN SEQRES 3 A 418 ALA SER ALA ALA ASP VAL VAL VAL VAL HIS GLY ARG ARG SEQRES 4 A 418 THR ALA ILE CYS ARG ALA GLY ARG GLY GLY PHE LYS ASP SEQRES 5 A 418 THR THR PRO ASP GLU LEU LEU SER ALA VAL MET THR ALA SEQRES 6 A 418 VAL LEU LYS ASP VAL ASN LEU ARG PRO GLU GLN LEU GLY SEQRES 7 A 418 ASP ILE CYS VAL GLY ASN VAL LEU GLN PRO GLY ALA GLY SEQRES 8 A 418 ALA ILE MET ALA ARG ILE ALA GLN PHE LEU SER ASP ILE SEQRES 9 A 418 PRO GLU THR VAL PRO LEU SER THR VAL ASN ARG GLN CYS SEQRES 10 A 418 SER SER GLY LEU GLN ALA VAL ALA SER ILE ALA GLY GLY SEQRES 11 A 418 ILE ARG ASN GLY SER TYR ASP ILE GLY MET ALA CYS GLY SEQRES 12 A 418 VAL GLU SER MET SER LEU ALA ASP ARG GLY ASN PRO GLY SEQRES 13 A 418 ASN ILE THR SER ARG LEU MET GLU LYS GLU LYS ALA ARG SEQRES 14 A 418 ASP CYS LEU ILE PRO MET GLY ILE THR SER GLU ASN VAL SEQRES 15 A 418 ALA GLU ARG PHE GLY ILE SER ARG GLU LYS GLN ASP THR SEQRES 16 A 418 PHE ALA LEU ALA SER GLN GLN LYS ALA ALA ARG ALA GLN SEQRES 17 A 418 SER LYS GLY CYS PHE GLN ALA GLU ILE VAL PRO VAL THR SEQRES 18 A 418 THR THR VAL HIS ASP ASP LYS GLY THR LYS ARG SER ILE SEQRES 19 A 418 THR VAL THR GLN ASP GLU GLY ILE ARG PRO SER THR THR SEQRES 20 A 418 MET GLU GLY LEU ALA LYS LEU LYS PRO ALA PHE LYS LYS SEQRES 21 A 418 ASP GLY SER THR THR ALA GLY ASN SER SER GLN VAL SER SEQRES 22 A 418 ASP GLY ALA ALA ALA ILE LEU LEU ALA ARG ARG SER LYS SEQRES 23 A 418 ALA GLU GLU LEU GLY LEU PRO ILE LEU GLY VAL LEU ARG SEQRES 24 A 418 SER TYR ALA VAL VAL GLY VAL PRO PRO ASP ILE MET GLY SEQRES 25 A 418 ILE GLY PRO ALA TYR ALA ILE PRO VAL ALA LEU GLN LYS SEQRES 26 A 418 ALA GLY LEU THR VAL SER ASP VAL ASP ILE PHE GLU ILE SEQRES 27 A 418 ASN GLU ALA PHE ALA SER GLN ALA ALA TYR CYS VAL GLU SEQRES 28 A 418 LYS LEU ARG LEU PRO PRO GLU LYS VAL ASN PRO LEU GLY SEQRES 29 A 418 GLY ALA VAL ALA LEU GLY HIS PRO LEU GLY CYS THR GLY SEQRES 30 A 418 ALA ARG GLN VAL ILE THR LEU LEU ASN GLU LEU LYS ARG SEQRES 31 A 418 ARG GLY LYS ARG ALA TYR GLY VAL VAL SER MET CYS ILE SEQRES 32 A 418 GLY THR GLY MET GLY ALA ALA ALA VAL PHE GLU TYR PRO SEQRES 33 A 418 GLY ASN SEQRES 1 B 418 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 418 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA PRO GLN SEQRES 3 B 418 ALA SER ALA ALA ASP VAL VAL VAL VAL HIS GLY ARG ARG SEQRES 4 B 418 THR ALA ILE CYS ARG ALA GLY ARG GLY GLY PHE LYS ASP SEQRES 5 B 418 THR THR PRO ASP GLU LEU LEU SER ALA VAL MET THR ALA SEQRES 6 B 418 VAL LEU LYS ASP VAL ASN LEU ARG PRO GLU GLN LEU GLY SEQRES 7 B 418 ASP ILE CYS VAL GLY ASN VAL LEU GLN PRO GLY ALA GLY SEQRES 8 B 418 ALA ILE MET ALA ARG ILE ALA GLN PHE LEU SER ASP ILE SEQRES 9 B 418 PRO GLU THR VAL PRO LEU SER THR VAL ASN ARG GLN CYS SEQRES 10 B 418 SER SER GLY LEU GLN ALA VAL ALA SER ILE ALA GLY GLY SEQRES 11 B 418 ILE ARG ASN GLY SER TYR ASP ILE GLY MET ALA CYS GLY SEQRES 12 B 418 VAL GLU SER MET SER LEU ALA ASP ARG GLY ASN PRO GLY SEQRES 13 B 418 ASN ILE THR SER ARG LEU MET GLU LYS GLU LYS ALA ARG SEQRES 14 B 418 ASP CYS LEU ILE PRO MET GLY ILE THR SER GLU ASN VAL SEQRES 15 B 418 ALA GLU ARG PHE GLY ILE SER ARG GLU LYS GLN ASP THR SEQRES 16 B 418 PHE ALA LEU ALA SER GLN GLN LYS ALA ALA ARG ALA GLN SEQRES 17 B 418 SER LYS GLY CYS PHE GLN ALA GLU ILE VAL PRO VAL THR SEQRES 18 B 418 THR THR VAL HIS ASP ASP LYS GLY THR LYS ARG SER ILE SEQRES 19 B 418 THR VAL THR GLN ASP GLU GLY ILE ARG PRO SER THR THR SEQRES 20 B 418 MET GLU GLY LEU ALA LYS LEU LYS PRO ALA PHE LYS LYS SEQRES 21 B 418 ASP GLY SER THR THR ALA GLY ASN SER SER GLN VAL SER SEQRES 22 B 418 ASP GLY ALA ALA ALA ILE LEU LEU ALA ARG ARG SER LYS SEQRES 23 B 418 ALA GLU GLU LEU GLY LEU PRO ILE LEU GLY VAL LEU ARG SEQRES 24 B 418 SER TYR ALA VAL VAL GLY VAL PRO PRO ASP ILE MET GLY SEQRES 25 B 418 ILE GLY PRO ALA TYR ALA ILE PRO VAL ALA LEU GLN LYS SEQRES 26 B 418 ALA GLY LEU THR VAL SER ASP VAL ASP ILE PHE GLU ILE SEQRES 27 B 418 ASN GLU ALA PHE ALA SER GLN ALA ALA TYR CYS VAL GLU SEQRES 28 B 418 LYS LEU ARG LEU PRO PRO GLU LYS VAL ASN PRO LEU GLY SEQRES 29 B 418 GLY ALA VAL ALA LEU GLY HIS PRO LEU GLY CYS THR GLY SEQRES 30 B 418 ALA ARG GLN VAL ILE THR LEU LEU ASN GLU LEU LYS ARG SEQRES 31 B 418 ARG GLY LYS ARG ALA TYR GLY VAL VAL SER MET CYS ILE SEQRES 32 B 418 GLY THR GLY MET GLY ALA ALA ALA VAL PHE GLU TYR PRO SEQRES 33 B 418 GLY ASN FORMUL 3 HOH *226(H2 O) HELIX 1 1 THR A 60 ASN A 77 1 18 HELIX 2 2 ARG A 79 LEU A 83 5 5 HELIX 3 3 GLN A 93 ALA A 96 5 4 HELIX 4 4 GLY A 97 SER A 108 1 12 HELIX 5 5 ARG A 121 CYS A 123 5 3 HELIX 6 6 SER A 124 ASN A 139 1 16 HELIX 7 7 ARG A 168 GLU A 171 5 4 HELIX 8 8 LYS A 172 ASP A 177 1 6 HELIX 9 9 CYS A 178 ILE A 180 5 3 HELIX 10 10 PRO A 181 PHE A 193 1 13 HELIX 11 11 SER A 196 GLY A 218 1 23 HELIX 12 12 THR A 254 LEU A 261 1 8 HELIX 13 13 ARG A 291 GLY A 298 1 8 HELIX 14 14 PRO A 314 GLY A 319 5 6 HELIX 15 15 ILE A 320 GLY A 334 1 15 HELIX 16 16 THR A 336 SER A 338 5 3 HELIX 17 17 PHE A 349 ARG A 361 1 13 HELIX 18 18 PRO A 363 VAL A 367 5 5 HELIX 19 19 GLY A 372 GLY A 377 1 6 HELIX 20 20 CYS A 382 GLY A 399 1 18 HELIX 21 21 THR B 60 ASN B 77 1 18 HELIX 22 22 ARG B 79 LEU B 83 5 5 HELIX 23 23 GLN B 93 ALA B 96 5 4 HELIX 24 24 GLY B 97 SER B 108 1 12 HELIX 25 25 ARG B 121 CYS B 123 5 3 HELIX 26 26 SER B 124 ASN B 139 1 16 HELIX 27 27 ARG B 168 GLU B 171 5 4 HELIX 28 28 LYS B 172 ASP B 177 1 6 HELIX 29 29 CYS B 178 ILE B 180 5 3 HELIX 30 30 PRO B 181 PHE B 193 1 13 HELIX 31 31 SER B 196 GLY B 218 1 23 HELIX 32 32 THR B 254 LYS B 260 1 7 HELIX 33 33 ARG B 291 GLY B 298 1 8 HELIX 34 34 PRO B 314 GLY B 319 5 6 HELIX 35 35 ILE B 320 GLY B 334 1 15 HELIX 36 36 THR B 336 SER B 338 5 3 HELIX 37 37 PHE B 349 LEU B 360 1 12 HELIX 38 38 PRO B 363 VAL B 367 5 5 HELIX 39 39 CYS B 382 GLY B 399 1 18 SHEET 1 A10 CYS A 49 ARG A 50 0 SHEET 2 A10 SER A 280 ARG A 290 -1 O ASP A 281 N CYS A 49 SHEET 3 A10 ILE A 144 SER A 152 -1 N ALA A 147 O ILE A 286 SHEET 4 A10 ILE A 86 GLY A 89 1 N CYS A 87 O CYS A 148 SHEET 5 A10 LEU A 116 ASN A 120 1 O SER A 117 N VAL A 88 SHEET 6 A10 LEU B 116 ASN B 120 -1 O THR B 118 N ASN A 120 SHEET 7 A10 ASP B 85 GLY B 89 1 N VAL B 88 O SER B 117 SHEET 8 A10 ILE B 144 SER B 152 1 O CYS B 148 N CYS B 87 SHEET 9 A10 SER B 280 ARG B 290 -1 O ILE B 286 N ALA B 147 SHEET 10 A10 CYS B 49 ARG B 50 -1 N CYS B 49 O ASP B 281 SHEET 1 B18 VAL A 340 ILE A 345 0 SHEET 2 B18 ALA A 402 ILE A 410 1 O VAL A 405 N GLU A 344 SHEET 3 B18 MET A 414 TYR A 422 -1 O TYR A 422 N ALA A 402 SHEET 4 B18 GLY A 303 GLY A 312 -1 N ALA A 309 O ALA A 417 SHEET 5 B18 VAL A 38 ARG A 45 -1 N VAL A 40 O GLY A 303 SHEET 6 B18 SER A 280 ARG A 290 -1 O LEU A 287 N VAL A 41 SHEET 7 B18 ILE A 144 SER A 152 -1 N ALA A 147 O ILE A 286 SHEET 8 B18 ILE A 86 GLY A 89 1 N CYS A 87 O CYS A 148 SHEET 9 B18 LEU A 116 ASN A 120 1 O SER A 117 N VAL A 88 SHEET 10 B18 LEU B 116 ASN B 120 -1 O THR B 118 N ASN A 120 SHEET 11 B18 ASP B 85 GLY B 89 1 N VAL B 88 O SER B 117 SHEET 12 B18 ILE B 144 SER B 152 1 O CYS B 148 N CYS B 87 SHEET 13 B18 SER B 280 ARG B 290 -1 O ILE B 286 N ALA B 147 SHEET 14 B18 VAL B 38 ARG B 45 -1 N VAL B 39 O ALA B 289 SHEET 15 B18 GLY B 303 GLY B 312 -1 O GLY B 303 N VAL B 40 SHEET 16 B18 MET B 414 TYR B 422 -1 O ALA B 417 N ALA B 309 SHEET 17 B18 ALA B 402 ILE B 410 -1 N ALA B 402 O TYR B 422 SHEET 18 B18 VAL B 340 ILE B 345 1 N GLU B 344 O VAL B 405 SHEET 1 C 2 VAL A 227 HIS A 232 0 SHEET 2 C 2 LYS A 238 VAL A 243 -1 O ILE A 241 N THR A 229 SHEET 1 D 2 VAL B 227 ASP B 233 0 SHEET 2 D 2 THR B 237 VAL B 243 -1 O THR B 237 N ASP B 233 CRYST1 55.147 96.845 142.055 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007040 0.00000