HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-SEP-06 2IJR TITLE CRYSTAL STRUCTURE OF A PROTEIN API92 FROM YERSINIA PSEUDOTUBERCULOSIS, TITLE 2 PFAM DUF1281 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN API92; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: API92; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGX3 KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,T.MIN,J.B.BONANNO,J.M.SAUDER,S.WASSERMAN,D.SMITH,S.K.BURLEY, AUTHOR 2 L.SHAPIRO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 4 03-FEB-21 2IJR 1 AUTHOR JRNL SEQADV LINK REVDAT 3 14-NOV-18 2IJR 1 AUTHOR REVDAT 2 24-FEB-09 2IJR 1 VERSN REVDAT 1 31-OCT-06 2IJR 0 JRNL AUTH X.JIN,T.MIN,J.B.BONANNO,J.M.SAUDER,S.WASSERMAN,D.SMITH, JRNL AUTH 2 S.K.BURLEY,L.SHAPIRO JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 10960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.708 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.851 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2304 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3137 ; 2.670 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ;22.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;39.940 ;23.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 371 ;23.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;24.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.232 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1779 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1120 ; 0.276 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1548 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1443 ; 0.990 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2264 ; 1.624 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 2.327 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 871 ; 3.762 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 57.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : 0.26900 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M MAGNESIUM FORMATE, 0.1M BIS TRIS, REMARK 280 PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.32800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.11350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.55675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.32800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 163.67025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.67025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.32800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.55675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 44.32800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.11350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.32800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.11350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.32800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 163.67025 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.55675 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.32800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.55675 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 163.67025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.32800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.32800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.11350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 283 REMARK 465 PRO A 284 REMARK 465 PRO A 285 REMARK 465 LEU A 286 REMARK 465 LYS A 287 REMARK 465 VAL A 288 REMARK 465 GLU A 289 REMARK 465 GLU A 290 REMARK 465 VAL A 291 REMARK 465 THR A 292 REMARK 465 VAL A 293 REMARK 465 ASN A 294 REMARK 465 GLY A 295 REMARK 465 GLN A 296 REMARK 465 GLU A 297 REMARK 465 GLU A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 275 O REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 N - CA - C ANGL. DEV. = -28.1 DEGREES REMARK 500 SER A 73 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU A 79 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 VAL A 93 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 LEU A 94 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU A 94 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 VAL A 114 CB - CA - C ANGL. DEV. = 41.1 DEGREES REMARK 500 VAL A 114 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 LYS A 115 N - CA - CB ANGL. DEV. = -31.7 DEGREES REMARK 500 LYS A 115 N - CA - C ANGL. DEV. = 48.6 DEGREES REMARK 500 TRP A 116 CB - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 TRP A 116 N - CA - C ANGL. DEV. = 31.9 DEGREES REMARK 500 GLY A 122 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG A 218 CB - CA - C ANGL. DEV. = 26.8 DEGREES REMARK 500 ARG A 218 N - CA - C ANGL. DEV. = -31.5 DEGREES REMARK 500 ILE A 219 N - CA - CB ANGL. DEV. = -28.1 DEGREES REMARK 500 ILE A 219 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 TYR A 277 CB - CA - C ANGL. DEV. = -23.5 DEGREES REMARK 500 GLY A 278 N - CA - C ANGL. DEV. = 28.6 DEGREES REMARK 500 PRO A 281 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 74.16 -158.36 REMARK 500 VAL A 67 27.42 -148.05 REMARK 500 ALA A 74 33.99 -97.30 REMARK 500 LEU A 94 10.45 82.61 REMARK 500 ASP A 95 -166.58 -102.70 REMARK 500 ASP A 97 -107.88 61.57 REMARK 500 GLN A 108 57.92 -152.00 REMARK 500 TRP A 116 -27.81 -38.67 REMARK 500 PRO A 120 -141.75 -42.15 REMARK 500 CYS A 167 47.17 35.77 REMARK 500 SER A 185 -168.43 -105.42 REMARK 500 SER A 208 -166.45 -168.08 REMARK 500 ARG A 218 151.25 173.54 REMARK 500 SER A 230 -54.26 66.96 REMARK 500 ASP A 246 61.43 28.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 12 GLY A 13 34.73 REMARK 500 GLY A 13 ARG A 14 -69.68 REMARK 500 ASP A 95 GLY A 96 126.28 REMARK 500 GLY A 96 ASP A 97 39.10 REMARK 500 GLN A 108 SER A 109 99.13 REMARK 500 SER A 113 VAL A 114 147.27 REMARK 500 GLU A 117 THR A 118 133.41 REMARK 500 GLU A 121 GLY A 122 36.02 REMARK 500 ALA A 142 SER A 143 -146.06 REMARK 500 GLY A 280 PRO A 281 -134.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10282B RELATED DB: TARGETDB DBREF 2IJR A 3 300 UNP Q6EVP2 Q6EVP2_YERPS 3 300 SEQADV 2IJR ALA A 1 UNP Q6EVP2 CLONING ARTIFACT SEQADV 2IJR LEU A 2 UNP Q6EVP2 CLONING ARTIFACT SEQADV 2IJR MSE A 21 UNP Q6EVP2 MET 21 MODIFIED RESIDUE SEQADV 2IJR MSE A 58 UNP Q6EVP2 MET 58 MODIFIED RESIDUE SEQADV 2IJR MSE A 131 UNP Q6EVP2 MET 131 MODIFIED RESIDUE SEQADV 2IJR MSE A 160 UNP Q6EVP2 MET 160 MODIFIED RESIDUE SEQADV 2IJR MSE A 169 UNP Q6EVP2 MET 169 MODIFIED RESIDUE SEQADV 2IJR MSE A 171 UNP Q6EVP2 MET 171 MODIFIED RESIDUE SEQADV 2IJR MSE A 204 UNP Q6EVP2 MET 204 MODIFIED RESIDUE SEQADV 2IJR MSE A 238 UNP Q6EVP2 MET 238 MODIFIED RESIDUE SEQRES 1 A 300 ALA LEU GLU TRP CYS LYS ASN ARG LEU GLU ILE THR GLY SEQRES 2 A 300 ARG SER VAL PHE VAL ASP ILE MSE GLN GLN TRP VAL THR SEQRES 3 A 300 GLY GLU GLU VAL PRO LEU TYR ARG HIS ALA ILE GLN GLN SEQRES 4 A 300 SER ILE ARG LEU PHE LEU ALA GLY CYS ALA GLY ILE LEU SEQRES 5 A 300 LYS PRO VAL LYS CYS MSE GLU TYR PRO PRO PHE PRO ARG SEQRES 6 A 300 LEU VAL SER HIS GLY THR GLY SER ALA VAL ALA SER ASN SEQRES 7 A 300 LEU ALA PHE GLN HIS TRP LEU ASP LEU LEU LEU LYS ASP SEQRES 8 A 300 ALA VAL LEU ASP GLY ASP THR ILE ARG GLN ILE ASP ARG SEQRES 9 A 300 ILE TYR LEU GLN SER GLY ILE ALA SER VAL LYS TRP GLU SEQRES 10 A 300 THR ILE PRO GLU GLY ALA ARG GLN ILE ILE THR GLN LEU SEQRES 11 A 300 MSE ALA ARG GLN TYR PRO ASP TRP PHE GLY VAL ALA SER SEQRES 12 A 300 TRP SER SER HIS ILE ASN GLY ALA ASP CYS TRP THR LYS SEQRES 13 A 300 LEU GLY VAL MSE GLN GLU HIS ALA CYS ASN CYS ASP MSE SEQRES 14 A 300 LEU MSE ILE ILE PRO THR ARG LEU ALA ILE GLU LEU ASN SEQRES 15 A 300 GLY ASN SER GLN LEU LEU THR GLY VAL SER THR THR HIS SEQRES 16 A 300 ASP LEU TYR SER HIS LEU TYR GLY MSE ALA TRP PRO SER SEQRES 17 A 300 GLY GLN ASN ILE ILE TRP GLN ARG ASP ARG ILE ASN SER SEQRES 18 A 300 LEU ARG LEU ASP PHE ASP SER PRO SER TYR PRO PRO SER SEQRES 19 A 300 ALA GLU LEU MSE GLY GLU LEU SER ALA VAL PHE ASP CYS SEQRES 20 A 300 GLU ILE ARG HIS TRP TYR GLN GLU PRO VAL ASN GLY ILE SEQRES 21 A 300 ARG GLY TYR ASP CYS TYR ASP ARG GLY ASP HIS VAL ASP SEQRES 22 A 300 SER GLY GLU TYR GLY ALA GLY PRO PHE LEU PRO PRO LEU SEQRES 23 A 300 LYS VAL GLU GLU VAL THR VAL ASN GLY GLN GLU GLU ALA SEQRES 24 A 300 ALA MODRES 2IJR MSE A 21 MET SELENOMETHIONINE MODRES 2IJR MSE A 58 MET SELENOMETHIONINE MODRES 2IJR MSE A 131 MET SELENOMETHIONINE MODRES 2IJR MSE A 160 MET SELENOMETHIONINE MODRES 2IJR MSE A 169 MET SELENOMETHIONINE MODRES 2IJR MSE A 171 MET SELENOMETHIONINE MODRES 2IJR MSE A 204 MET SELENOMETHIONINE MODRES 2IJR MSE A 238 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 58 8 HET MSE A 131 8 HET MSE A 160 8 HET MSE A 169 8 HET MSE A 171 8 HET MSE A 204 8 HET MSE A 238 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *44(H2 O) HELIX 1 1 ARG A 14 GLY A 27 1 14 HELIX 2 2 PRO A 31 GLY A 50 1 20 HELIX 3 3 PHE A 63 SER A 68 5 6 HELIX 4 4 VAL A 75 LYS A 90 1 16 HELIX 5 5 GLY A 96 GLN A 108 1 13 HELIX 6 6 GLY A 110 VAL A 114 5 5 HELIX 7 7 GLU A 121 GLN A 134 1 14 HELIX 8 8 GLN A 134 PHE A 139 1 6 HELIX 9 9 ASN A 149 LEU A 157 1 9 HELIX 10 10 ASP A 168 ILE A 172 5 5 HELIX 11 11 ARG A 176 GLY A 183 1 8 HELIX 12 12 THR A 193 GLY A 203 1 11 HELIX 13 13 SER A 234 PHE A 245 1 12 SHEET 1 A 6 GLN A 210 ARG A 218 0 SHEET 2 A 6 SER A 221 PRO A 229 -1 O ASP A 227 N GLN A 210 SHEET 3 A 6 TRP A 4 THR A 12 -1 N LEU A 9 O LEU A 224 SHEET 4 A 6 GLU A 248 GLU A 255 -1 O GLU A 248 N THR A 12 SHEET 5 A 6 ILE A 260 ASP A 267 -1 O ILE A 260 N GLU A 255 SHEET 6 A 6 ASP A 270 SER A 274 -1 O ASP A 273 N CYS A 265 LINK C ILE A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N GLN A 22 1555 1555 1.32 LINK C CYS A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N GLU A 59 1555 1555 1.33 LINK C LEU A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ALA A 132 1555 1555 1.34 LINK C VAL A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N GLN A 161 1555 1555 1.33 LINK C ASP A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N LEU A 170 1555 1555 1.32 LINK C LEU A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N ILE A 172 1555 1555 1.34 LINK C GLY A 203 N MSE A 204 1555 1555 1.34 LINK C MSE A 204 N ALA A 205 1555 1555 1.34 LINK C LEU A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N GLY A 239 1555 1555 1.34 CISPEP 1 THR A 71 GLY A 72 0 4.92 CISPEP 2 VAL A 93 LEU A 94 0 15.78 CISPEP 3 VAL A 114 LYS A 115 0 26.29 CISPEP 4 GLY A 278 ALA A 279 0 18.27 CRYST1 88.656 88.656 218.227 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004582 0.00000