HEADER HYDROLASE 02-OCT-06 2IKE TITLE SOLUTION STRUCTURE OF THE SECOND CLIP DOMAIN IN PAP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPHENOLOXIDASE ACTIVATING PROTEINASE-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND CLIP DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MANDUCA SEXTA; SOURCE 3 ORGANISM_COMMON: TOBACCO HORNWORM; SOURCE 4 ORGANISM_TAXID: 7130; SOURCE 5 GENE: PAP-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS BETA-SHEET, DOUBLE HELIX, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.D.HUANG,Z.Q.LV,H.E.DAI,D.V.VELDE,O.PRAKASH,H.B.JIANG REVDAT 3 09-MAR-22 2IKE 1 REMARK REVDAT 2 24-FEB-09 2IKE 1 VERSN REVDAT 1 16-OCT-07 2IKE 0 JRNL AUTH R.D.HUANG,Z.Q.LV,H.E.DAI,D.V.VELDE,O.PRAKASH,H.B.JIANG JRNL TITL SOLUTION STRUCTURE OF CLIP DOMAIN IN PAP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 753 RESTRAINTS, 690 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 27 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 36 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS REMARK 4 REMARK 4 2IKE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039680. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM DUAL-CLIP DOMAIN U-15N,13C, REMARK 210 100 MM PHOSPHATE BUFFER NA, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, CNS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 MATRIX RELAXATION, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 78 37.64 72.72 REMARK 500 1 ASN A 85 -177.35 -52.06 REMARK 500 1 ILE A 86 35.10 -99.07 REMARK 500 1 LYS A 87 46.70 -154.23 REMARK 500 1 LYS A 88 -43.03 -164.02 REMARK 500 1 SER A 111 38.47 -97.24 REMARK 500 1 ALA A 114 99.80 58.31 REMARK 500 1 ASP A 118 17.71 -154.60 REMARK 500 1 ASN A 119 29.20 46.93 REMARK 500 2 ASN A 85 -175.58 -56.45 REMARK 500 2 LYS A 87 35.62 -171.42 REMARK 500 2 LYS A 88 -44.32 -151.36 REMARK 500 2 ASP A 98 66.32 70.02 REMARK 500 2 SER A 111 37.81 -97.36 REMARK 500 3 ASN A 85 178.57 -51.75 REMARK 500 3 SER A 111 41.85 -103.30 REMARK 500 3 PRO A 116 -169.02 -69.13 REMARK 500 3 ASP A 118 26.48 -179.83 REMARK 500 3 ASN A 119 90.77 43.81 REMARK 500 4 ASN A 85 176.90 -54.32 REMARK 500 4 LYS A 88 -39.13 -136.57 REMARK 500 4 PRO A 99 -172.09 -53.80 REMARK 500 4 SER A 111 42.20 -105.29 REMARK 500 4 CYS A 113 36.87 -96.98 REMARK 500 4 ALA A 114 101.95 61.82 REMARK 500 4 GLU A 117 -79.68 63.55 REMARK 500 4 ASN A 119 -38.70 -179.29 REMARK 500 5 ASN A 85 -175.70 -53.77 REMARK 500 5 LYS A 87 29.38 -150.49 REMARK 500 5 LYS A 88 -44.16 -131.29 REMARK 500 5 SER A 111 38.54 -97.30 REMARK 500 5 CYS A 113 38.71 -95.07 REMARK 500 5 ASP A 118 30.94 -148.89 REMARK 500 6 ASN A 78 38.88 70.78 REMARK 500 6 ASN A 85 -175.39 -54.99 REMARK 500 6 SER A 111 38.30 -97.60 REMARK 500 6 ALA A 114 -179.13 52.79 REMARK 500 6 GLU A 117 104.89 44.52 REMARK 500 6 ASP A 118 -38.45 -171.06 REMARK 500 7 ASN A 78 31.39 70.66 REMARK 500 7 ASN A 85 -166.31 -56.23 REMARK 500 7 ILE A 86 36.11 -97.17 REMARK 500 7 LYS A 87 47.94 -155.16 REMARK 500 7 LYS A 88 -46.25 -158.02 REMARK 500 7 PRO A 99 -166.06 -68.43 REMARK 500 7 ILE A 100 157.97 70.50 REMARK 500 7 SER A 111 37.91 -97.13 REMARK 500 8 ASN A 78 35.56 70.10 REMARK 500 8 ASN A 85 177.68 -51.61 REMARK 500 8 PRO A 99 87.41 -55.20 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IKD RELATED DB: PDB DBREF 2IKE A 71 124 UNP Q2FAY5 Q2FAY5_MANSE 80 133 SEQRES 1 A 54 LEU SER CYS LEU THR PRO ASP ASN LYS PRO GLY LYS CYS SEQRES 2 A 54 VAL ASN ILE LYS LYS CYS THR HIS LEU ALA GLU ILE GLU SEQRES 3 A 54 GLU ASP PRO ILE GLY GLU ASP GLU THR THR TYR LEU LYS SEQRES 4 A 54 ASN SER VAL CYS ALA GLY PRO GLU ASP ASN SER VAL CYS SEQRES 5 A 54 CYS GLY HELIX 1 1 CYS A 89 ASP A 98 1 10 HELIX 2 2 GLY A 101 SER A 111 1 11 SHEET 1 A 3 SER A 72 LEU A 74 0 SHEET 2 A 3 PRO A 80 ASN A 85 -1 O GLY A 81 N CYS A 73 SHEET 3 A 3 SER A 120 CYS A 123 -1 O CYS A 123 N LYS A 82 SSBOND 1 CYS A 73 CYS A 122 1555 1555 2.03 SSBOND 2 CYS A 83 CYS A 113 1555 1555 2.03 SSBOND 3 CYS A 89 CYS A 123 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1