HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-OCT-06 2IL5 TITLE STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION SA2116 FROM STAPHYLOCOCCUS TITLE 2 AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 367830; SOURCE 4 STRAIN: USA300; SOURCE 5 GENE: SA2116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, APC23650, HYPOTHETICAL PROTEIN, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,P.QUARTEY,D.HOLZLE,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2IL5 1 VERSN REVDAT 2 24-FEB-09 2IL5 1 VERSN REVDAT 1 31-OCT-06 2IL5 0 JRNL AUTH J.OSIPIUK,P.QUARTEY,D.HOLZLE,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN SA2116 FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 11531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 63.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 2.25000 REMARK 3 B12 (A**2) : -0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.877 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1399 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1878 ; 1.664 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 162 ; 8.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;38.033 ;25.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;18.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 197 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1055 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 560 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 911 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 806 ; 0.951 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1309 ; 1.792 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 613 ; 2.699 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 568 ; 4.162 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8492 36.8358 5.6223 REMARK 3 T TENSOR REMARK 3 T11: -0.0112 T22: -0.1303 REMARK 3 T33: 0.0347 T12: 0.0357 REMARK 3 T13: 0.1054 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 3.1602 L22: 2.7990 REMARK 3 L33: 3.1745 L12: -0.6011 REMARK 3 L13: -0.7784 L23: -0.0782 REMARK 3 S TENSOR REMARK 3 S11: -0.2053 S12: -0.2549 S13: -0.3311 REMARK 3 S21: 0.2115 S22: 0.0988 S23: -0.1310 REMARK 3 S31: 0.3528 S32: 0.2052 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3130 41.4539 -3.9964 REMARK 3 T TENSOR REMARK 3 T11: -0.0420 T22: -0.1645 REMARK 3 T33: -0.0417 T12: -0.0065 REMARK 3 T13: 0.0928 T23: -0.1256 REMARK 3 L TENSOR REMARK 3 L11: 2.0689 L22: 4.8659 REMARK 3 L33: 2.7406 L12: 1.0612 REMARK 3 L13: -1.6786 L23: -3.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.3197 S12: 0.1832 S13: -0.4076 REMARK 3 S21: -0.2200 S22: 0.0055 S23: -0.0814 REMARK 3 S31: 0.5355 S32: -0.0388 S33: 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB039707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 20.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, CNS, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M PROLINE, 0.1 M HEPES BUFFER, 10% REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.07000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.03500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL MOLECULE REMARK 300 FOR THE PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 95 REMARK 465 LEU A 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 101 O HOH A 205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 39 -28.70 -148.42 REMARK 500 MSE A 41 16.60 58.79 REMARK 500 GLU A 85 -43.54 -131.82 REMARK 500 THR A 112 -116.13 114.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 111 THR A 112 -142.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 125 22.7 L L OUTSIDE RANGE REMARK 500 ASP A 156 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC23650 RELATED DB: TARGETDB DBREF 2IL5 A 1 168 UNP Q2FEH1 Q2FEH1_STAA3 1 168 SEQADV 2IL5 SER A -2 UNP Q2FEH1 CLONING ARTIFACT SEQADV 2IL5 ASN A -1 UNP Q2FEH1 CLONING ARTIFACT SEQADV 2IL5 ALA A 0 UNP Q2FEH1 CLONING ARTIFACT SEQADV 2IL5 MSE A 1 UNP Q2FEH1 MET 1 MODIFIED RESIDUE SEQADV 2IL5 MSE A 41 UNP Q2FEH1 MET 41 MODIFIED RESIDUE SEQADV 2IL5 MSE A 83 UNP Q2FEH1 MET 83 MODIFIED RESIDUE SEQADV 2IL5 MSE A 89 UNP Q2FEH1 MET 89 MODIFIED RESIDUE SEQADV 2IL5 MSE A 93 UNP Q2FEH1 MET 93 MODIFIED RESIDUE SEQADV 2IL5 MSE A 117 UNP Q2FEH1 MET 117 MODIFIED RESIDUE SEQADV 2IL5 MSE A 147 UNP Q2FEH1 MET 147 MODIFIED RESIDUE SEQADV 2IL5 MSE A 154 UNP Q2FEH1 MET 154 MODIFIED RESIDUE SEQADV 2IL5 MSE A 158 UNP Q2FEH1 MET 158 MODIFIED RESIDUE SEQRES 1 A 171 SER ASN ALA MSE ALA LYS PHE ASN VAL GLU ASN GLU HIS SEQRES 2 A 171 VAL GLU VAL GLU ILE GLU LYS LEU TYR LYS PHE SER PRO SEQRES 3 A 171 GLU LEU VAL TYR GLU ALA TRP THR LYS LYS ASP LEU LEU SEQRES 4 A 171 LYS GLN TRP PHE MSE THR SER ALA ARG THR ASN LYS GLU SEQRES 5 A 171 ILE GLU ALA ASP VAL LYS GLU GLY GLY LYS TYR ARG ILE SEQRES 6 A 171 VAL ASP GLN GLN ARG ASN GLY LYS VAL ASN VAL ILE GLU SEQRES 7 A 171 GLY ILE TYR GLU SER LEU VAL MSE ASP GLU TYR VAL LYS SEQRES 8 A 171 MSE THR ILE GLY MSE PRO GLY LEU SER GLU THR GLN ASP SEQRES 9 A 171 VAL ILE GLU VAL GLU PHE PHE GLU ARG GLU THR GLY GLY SEQRES 10 A 171 THR GLN MSE LEU PHE TYR TYR ARG SER LEU VAL GLU LYS SEQRES 11 A 171 GLU ARG ARG PHE THR ASN LEU GLU TYR LYS GLN LYS LYS SEQRES 12 A 171 LYS GLU TYR HIS ASP ALA MSE VAL HIS GLY PHE GLU LEU SEQRES 13 A 171 MSE PHE ASP LYS MSE TYR HIS VAL ILE GLU THR SER THR SEQRES 14 A 171 GLN GLN MODRES 2IL5 MSE A 41 MET SELENOMETHIONINE MODRES 2IL5 MSE A 83 MET SELENOMETHIONINE MODRES 2IL5 MSE A 89 MET SELENOMETHIONINE MODRES 2IL5 MSE A 93 MET SELENOMETHIONINE MODRES 2IL5 MSE A 117 MET SELENOMETHIONINE MODRES 2IL5 MSE A 147 MET SELENOMETHIONINE MODRES 2IL5 MSE A 154 MET SELENOMETHIONINE MODRES 2IL5 MSE A 158 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 83 8 HET MSE A 89 8 HET MSE A 93 8 HET MSE A 117 8 HET MSE A 147 8 HET MSE A 154 8 HET MSE A 158 8 HET NA A 201 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *82(H2 O) HELIX 1 1 SER A 22 TRP A 30 1 9 HELIX 2 2 LYS A 32 LYS A 37 1 6 HELIX 3 3 ARG A 67 GLY A 69 5 3 HELIX 4 4 THR A 132 THR A 164 1 33 SHEET 1 A 7 GLU A 9 TYR A 19 0 SHEET 2 A 7 THR A 115 VAL A 125 -1 O MSE A 117 N LYS A 17 SHEET 3 A 7 ASP A 101 GLU A 109 -1 N PHE A 108 O GLN A 116 SHEET 4 A 7 TYR A 86 ILE A 91 -1 N ILE A 91 O ASP A 101 SHEET 5 A 7 VAL A 71 VAL A 82 -1 N VAL A 82 O TYR A 86 SHEET 6 A 7 LYS A 59 GLN A 65 -1 N ILE A 62 O ILE A 74 SHEET 7 A 7 ASN A 47 ALA A 52 -1 N GLU A 51 O ARG A 61 LINK C PHE A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N THR A 42 1555 1555 1.32 LINK C VAL A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N ASP A 84 1555 1555 1.35 LINK C LYS A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N THR A 90 1555 1555 1.34 LINK C GLY A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N PRO A 94 1555 1555 1.36 LINK C GLN A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N LEU A 118 1555 1555 1.34 LINK C ALA A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N VAL A 148 1555 1555 1.33 LINK C LEU A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N PHE A 155 1555 1555 1.33 LINK C LYS A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N TYR A 159 1555 1555 1.33 SITE 1 AC1 1 GLY A 92 CRYST1 107.588 107.588 39.105 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009295 0.005366 0.000000 0.00000 SCALE2 0.000000 0.010733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025572 0.00000