HEADER OXIDOREDUCTASE 06-OCT-06 2INC TITLE NATIVE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE X-RAY CRYSTAL TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE, O-XYLENE MONOOXYGENASE OXYGENASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TOLUENE, O-XYLENE MONOOXYGENASE OXYGENASE SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TOUB PROTEIN; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 3 ORGANISM_TAXID: 316; SOURCE 4 STRAIN: OX1; SOURCE 5 GENE: TOUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 13 ORGANISM_TAXID: 316; SOURCE 14 STRAIN: OX1; SOURCE 15 GENE: TOUE; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET22B(+); SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 23 ORGANISM_TAXID: 316; SOURCE 24 STRAIN: OX1; SOURCE 25 GENE: TOUB; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_VECTOR: PET22B(+) KEYWDS DIIRON, 4-HELIX BUNDLE, CARBOXYLATE BRIDGE, METALLOENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MCCORMICK,M.H.SAZINSKY,K.L.CONDON,S.J.LIPPARD REVDAT 5 30-AUG-23 2INC 1 REMARK LINK REVDAT 4 18-OCT-17 2INC 1 REMARK REVDAT 3 24-FEB-09 2INC 1 VERSN REVDAT 2 05-DEC-06 2INC 1 JRNL REVDAT 1 28-NOV-06 2INC 0 JRNL AUTH M.S.MCCORMICK,M.H.SAZINSKY,K.L.CONDON,S.J.LIPPARD JRNL TITL X-RAY CRYSTAL STRUCTURES OF MANGANESE(II)-RECONSTITUTED AND JRNL TITL 2 NATIVE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE REVEAL JRNL TITL 3 ROTAMER SHIFTS IN CONSERVED RESIDUES AND AN ENHANCED VIEW OF JRNL TITL 4 THE PROTEIN INTERIOR. JRNL REF J.AM.CHEM.SOC. V. 128 15108 2006 JRNL REFN ISSN 0002-7863 JRNL PMID 17117860 JRNL DOI 10.1021/JA064837R REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 96823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.33000 REMARK 3 B22 (A**2) : -3.33000 REMARK 3 B33 (A**2) : 4.99000 REMARK 3 B12 (A**2) : -1.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7563 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10268 ; 1.689 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 893 ; 6.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 397 ;34.326 ;23.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1240 ;15.426 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;19.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1053 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5918 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3878 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5221 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 468 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.144 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4570 ; 1.073 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7194 ; 1.734 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3503 ; 2.759 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3074 ; 4.247 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2INC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 101 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 55.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1T0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 2.1-2.5 M REMARK 280 AMMONIUM SULFATE, 2-4% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.70367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.40733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.40733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.70367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND HALF OF THE DIMERIC BIOLOGICAL ASSEMBLY IS REMARK 300 GENERATED BY THE TWO FOLD AXIS: X-Y, -Y, -Z+2/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.40733 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 42 N ARG C 42 CA -0.132 REMARK 500 ARG C 42 CB ARG C 42 CG -0.190 REMARK 500 ARG C 42 CZ ARG C 42 NH2 -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 GLY A 249 C - N - CA ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 393 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 174 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 203 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG C 41 CA - C - N ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG C 41 O - C - N ANGL. DEV. = 20.9 DEGREES REMARK 500 ARG C 42 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG C 42 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 42 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG C 42 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 -37.24 -130.02 REMARK 500 SER A 152 138.92 -174.98 REMARK 500 PHE A 200 -55.88 -131.68 REMARK 500 ASN A 248 -155.80 -108.42 REMARK 500 TYR A 279 -32.32 -140.24 REMARK 500 GLU A 326 -55.89 -132.31 REMARK 500 TRP A 338 30.46 -91.71 REMARK 500 THR A 368 -91.26 -115.06 REMARK 500 MET A 399 -67.64 -103.13 REMARK 500 PRO A 408 -167.12 -102.61 REMARK 500 ASN A 413 37.20 -148.54 REMARK 500 ASP A 440 65.28 -151.89 REMARK 500 ARG B 22 -90.26 57.27 REMARK 500 ARG B 44 80.05 -152.61 REMARK 500 CYS B 62 -66.72 -101.55 REMARK 500 ASP B 106 -70.61 -50.96 REMARK 500 ARG B 107 -58.70 45.10 REMARK 500 TYR B 125 -61.93 -105.59 REMARK 500 PRO B 308 129.19 -39.27 REMARK 500 ARG C 12 -9.56 73.19 REMARK 500 SER C 38 -52.69 -138.30 REMARK 500 ARG C 41 -68.00 -99.49 REMARK 500 THR C 76 3.90 84.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 106 ARG B 107 86.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE1 REMARK 620 2 GLU A 134 OE1 89.1 REMARK 620 3 HIS A 137 ND1 108.3 94.2 REMARK 620 4 HOH A 504 O 158.4 98.3 91.5 REMARK 620 5 HOH A 505 O 85.0 87.0 166.7 75.2 REMARK 620 6 HOH A 506 O 85.2 173.1 91.4 85.6 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 GLU A 197 OE2 88.2 REMARK 620 3 GLU A 231 OE2 169.1 83.7 REMARK 620 4 HIS A 234 NE2 87.0 91.8 86.0 REMARK 620 5 HOH A 504 O 106.8 164.1 82.0 94.0 REMARK 620 6 HOH A 505 O 81.7 94.3 106.2 166.9 83.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T0Q RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE SAME PROTEIN AT A LOWER RESOLUTION. DBREF 2INC A 2 492 UNP O87798 O87798_PSEST 2 492 DBREF 2INC B 8 329 UNP O87802 O87802_PSEST 8 329 DBREF 2INC C 3 85 UNP O87799 O87799_PSEST 3 85 SEQRES 1 A 491 SER MET LEU LYS ARG GLU ASP TRP TYR ASP LEU THR ARG SEQRES 2 A 491 THR THR ASN TRP THR PRO LYS TYR VAL THR GLU ASN GLU SEQRES 3 A 491 LEU PHE PRO GLU GLU MET SER GLY ALA ARG GLY ILE SER SEQRES 4 A 491 MET GLU ALA TRP GLU LYS TYR ASP GLU PRO TYR LYS ILE SEQRES 5 A 491 THR TYR PRO GLU TYR VAL SER ILE GLN ARG GLU LYS ASP SEQRES 6 A 491 SER GLY ALA TYR SER ILE LYS ALA ALA LEU GLU ARG ASP SEQRES 7 A 491 GLY PHE VAL ASP ARG ALA ASP PRO GLY TRP VAL SER THR SEQRES 8 A 491 MET GLN LEU HIS PHE GLY ALA ILE ALA LEU GLU GLU TYR SEQRES 9 A 491 ALA ALA SER THR ALA GLU ALA ARG MET ALA ARG PHE ALA SEQRES 10 A 491 LYS ALA PRO GLY ASN ARG ASN MET ALA THR PHE GLY MET SEQRES 11 A 491 MET ASP GLU ASN ARG HIS GLY GLN ILE GLN LEU TYR PHE SEQRES 12 A 491 PRO TYR ALA ASN VAL LYS ARG SER ARG LYS TRP ASP TRP SEQRES 13 A 491 ALA HIS LYS ALA ILE HIS THR ASN GLU TRP ALA ALA ILE SEQRES 14 A 491 ALA ALA ARG SER PHE PHE ASP ASP MET MET MET THR ARG SEQRES 15 A 491 ASP SER VAL ALA VAL SER ILE MET LEU THR PHE ALA PHE SEQRES 16 A 491 GLU THR GLY PHE THR ASN MET GLN PHE LEU GLY LEU ALA SEQRES 17 A 491 ALA ASP ALA ALA GLU ALA GLY ASP HIS THR PHE ALA SER SEQRES 18 A 491 LEU ILE SER SER ILE GLN THR ASP GLU SER ARG HIS ALA SEQRES 19 A 491 GLN GLN GLY GLY PRO SER LEU LYS ILE LEU VAL GLU ASN SEQRES 20 A 491 GLY LYS LYS ASP GLU ALA GLN GLN MET VAL ASP VAL ALA SEQRES 21 A 491 ILE TRP ARG SER TRP LYS LEU PHE SER VAL LEU THR GLY SEQRES 22 A 491 PRO ILE MET ASP TYR TYR THR PRO LEU GLU SER ARG ASN SEQRES 23 A 491 GLN SER PHE LYS GLU PHE MET LEU GLU TRP ILE VAL ALA SEQRES 24 A 491 GLN PHE GLU ARG GLN LEU LEU ASP LEU GLY LEU ASP LYS SEQRES 25 A 491 PRO TRP TYR TRP ASP GLN PHE MET GLN ASP LEU ASP GLU SEQRES 26 A 491 THR HIS HIS GLY MET HIS LEU GLY VAL TRP TYR TRP ARG SEQRES 27 A 491 PRO THR VAL TRP TRP ASP PRO ALA ALA GLY VAL SER PRO SEQRES 28 A 491 GLU GLU ARG GLU TRP LEU GLU GLU LYS TYR PRO GLY TRP SEQRES 29 A 491 ASN ASP THR TRP GLY GLN CYS TRP ASP VAL ILE THR ASP SEQRES 30 A 491 ASN LEU VAL ASN GLY LYS PRO GLU LEU THR VAL PRO GLU SEQRES 31 A 491 THR LEU PRO THR ILE CYS ASN MET CYS ASN LEU PRO ILE SEQRES 32 A 491 ALA HIS THR PRO GLY ASN LYS TRP ASN VAL LYS ASP TYR SEQRES 33 A 491 GLN LEU GLU TYR GLU GLY ARG LEU TYR HIS PHE GLY SER SEQRES 34 A 491 GLU ALA ASP ARG TRP CYS PHE GLN ILE ASP PRO GLU ARG SEQRES 35 A 491 TYR LYS ASN HIS THR ASN LEU VAL ASP ARG PHE LEU LYS SEQRES 36 A 491 GLY GLU ILE GLN PRO ALA ASP LEU ALA GLY ALA LEU MET SEQRES 37 A 491 TYR MET SER LEU GLU PRO GLY VAL MET GLY ASP ASP ALA SEQRES 38 A 491 HIS ASP TYR GLU TRP VAL LYS ALA TYR GLN SEQRES 1 B 322 ALA LEU LYS PRO LEU LYS THR TRP SER HIS LEU ALA GLY SEQRES 2 B 322 ASN ARG ARG ARG PRO SER GLU TYR GLU VAL VAL SER THR SEQRES 3 B 322 ASN LEU HIS TYR PHE THR ASP ASN PRO GLU ARG PRO TRP SEQRES 4 B 322 GLU LEU ASP SER ASN LEU PRO MET GLN THR TRP TYR LYS SEQRES 5 B 322 LYS TYR CYS PHE ASP SER PRO LEU LYS HIS ASP ASP TRP SEQRES 6 B 322 ASN ALA PHE ARG ASP PRO ASP GLN LEU VAL TYR ARG THR SEQRES 7 B 322 TYR ASN LEU LEU GLN ASP GLY GLN GLU SER TYR VAL GLN SEQRES 8 B 322 GLY LEU PHE ASP GLN LEU ASN ASP ARG GLY HIS ASP GLN SEQRES 9 B 322 MET LEU THR ARG GLU TRP VAL GLU THR LEU ALA ARG PHE SEQRES 10 B 322 TYR THR PRO ALA ARG TYR LEU PHE HIS ALA LEU GLN MET SEQRES 11 B 322 GLY SER VAL TYR ILE HIS GLN ILE ALA PRO ALA SER THR SEQRES 12 B 322 ILE THR ASN CYS ALA THR TYR GLU THR ALA ASP HIS LEU SEQRES 13 B 322 ARG TRP LEU THR HIS THR ALA TYR ARG THR ARG GLU LEU SEQRES 14 B 322 ALA ASN CYS TYR PRO ASP VAL GLY PHE GLY LYS ARG GLU SEQRES 15 B 322 ARG ASP VAL TRP GLU ASN ASP PRO ALA TRP GLN GLY PHE SEQRES 16 B 322 ARG GLU LEU ILE GLU LYS ALA LEU ILE ALA TRP ASP TRP SEQRES 17 B 322 GLY GLU ALA PHE THR ALA ILE ASN LEU VAL THR LYS PRO SEQRES 18 B 322 ALA VAL GLU GLU ALA LEU LEU GLN GLN LEU GLY SER LEU SEQRES 19 B 322 ALA GLN SER GLU GLY ASP THR LEU LEU GLY LEU LEU ALA SEQRES 20 B 322 GLN ALA GLN LYS ARG ASP ALA GLU ARG HIS ARG ARG TRP SEQRES 21 B 322 SER SER ALA LEU VAL LYS MET ALA LEU GLU LYS GLU GLY SEQRES 22 B 322 ASN ARG GLU VAL LEU GLN LYS TRP VAL ALA LYS TRP GLU SEQRES 23 B 322 PRO LEU ALA ASP LYS ALA ILE GLU ALA TYR CYS SER ALA SEQRES 24 B 322 LEU PRO ASP GLY GLU ASN ALA ILE VAL GLU ALA LYS SER SEQRES 25 B 322 ALA SER ARG TYR VAL ARG GLN MET MET GLY SEQRES 1 C 83 THR PHE PRO ILE MET SER ASN PHE GLU ARG ASP PHE VAL SEQRES 2 C 83 ILE GLN LEU VAL PRO VAL ASP THR GLU ASP THR MET ASP SEQRES 3 C 83 GLN VAL ALA GLU LYS CYS ALA TYR HIS SER ILE ASN ARG SEQRES 4 C 83 ARG VAL HIS PRO GLN PRO GLU LYS ILE LEU ARG VAL ARG SEQRES 5 C 83 ARG HIS GLU ASP GLY THR LEU PHE PRO ARG GLY MET ILE SEQRES 6 C 83 VAL SER ASP ALA GLY LEU ARG PRO THR GLU THR LEU ASP SEQRES 7 C 83 ILE ILE PHE MET ASP HET FE A 501 1 HET FE A 502 1 HET P6G A 503 19 HETNAM FE FE (III) ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 4 FE 2(FE 3+) FORMUL 6 P6G C12 H26 O7 FORMUL 7 HOH *365(H2 O) HELIX 1 1 LYS A 5 ARG A 14 1 10 HELIX 2 2 THR A 24 PHE A 29 1 6 HELIX 3 3 PRO A 30 GLY A 35 1 6 HELIX 4 4 SER A 40 GLU A 45 1 6 HELIX 5 5 THR A 54 GLU A 77 1 24 HELIX 6 6 GLY A 80 ARG A 84 5 5 HELIX 7 7 ASP A 86 ALA A 118 1 33 HELIX 8 8 ALA A 120 ALA A 147 1 28 HELIX 9 9 ASN A 148 TRP A 155 5 8 HELIX 10 10 ASP A 156 ALA A 161 1 6 HELIX 11 11 ILE A 162 THR A 164 5 3 HELIX 12 12 GLU A 166 MET A 180 1 15 HELIX 13 13 ASP A 184 LEU A 192 1 9 HELIX 14 14 PHE A 200 ALA A 215 1 16 HELIX 15 15 ASP A 217 THR A 229 1 13 HELIX 16 16 ASP A 230 GLN A 236 1 7 HELIX 17 17 GLN A 237 ASN A 248 1 12 HELIX 18 18 LYS A 250 THR A 273 1 24 HELIX 19 19 THR A 273 TYR A 280 1 8 HELIX 20 20 PRO A 282 ARG A 286 5 5 HELIX 21 21 SER A 289 ILE A 298 1 10 HELIX 22 22 ILE A 298 GLY A 310 1 13 HELIX 23 23 TYR A 316 LEU A 324 1 9 HELIX 24 24 GLU A 326 TRP A 338 1 13 HELIX 25 25 ARG A 339 VAL A 342 5 4 HELIX 26 26 SER A 351 TYR A 362 1 12 HELIX 27 27 THR A 368 ASN A 382 1 15 HELIX 28 28 LYS A 384 VAL A 389 5 6 HELIX 29 29 PRO A 408 TRP A 412 5 5 HELIX 30 30 SER A 430 ASP A 440 1 11 HELIX 31 31 PRO A 441 TYR A 444 5 4 HELIX 32 32 ASN A 449 LYS A 456 1 8 HELIX 33 33 ASP A 463 MET A 471 1 9 HELIX 34 34 TYR A 485 TYR A 491 5 7 HELIX 35 35 TRP B 15 ALA B 19 5 5 HELIX 36 36 SER B 26 THR B 33 1 8 HELIX 37 37 LEU B 52 CYS B 62 1 11 HELIX 38 38 ASP B 71 PHE B 75 5 5 HELIX 39 39 VAL B 82 ARG B 107 1 26 HELIX 40 40 HIS B 109 LEU B 113 5 5 HELIX 41 41 THR B 114 TYR B 125 1 12 HELIX 42 42 PRO B 127 ALA B 146 1 20 HELIX 43 43 ALA B 148 TYR B 180 1 33 HELIX 44 44 ARG B 188 ASP B 196 1 9 HELIX 45 45 ASP B 196 LEU B 210 1 15 HELIX 46 46 ASP B 214 LEU B 224 1 11 HELIX 47 47 VAL B 225 LEU B 235 1 11 HELIX 48 48 LEU B 235 GLU B 245 1 11 HELIX 49 49 ASP B 247 LEU B 276 1 30 HELIX 50 50 GLY B 280 LEU B 307 1 28 HELIX 51 51 ASP B 309 MET B 327 1 19 HELIX 52 52 THR C 26 TYR C 36 1 11 HELIX 53 53 ILE C 67 ALA C 71 5 5 SHEET 1 A 2 LEU A 419 TYR A 421 0 SHEET 2 A 2 ARG A 424 TYR A 426 -1 O TYR A 426 N LEU A 419 SHEET 1 B 5 ILE C 16 VAL C 21 0 SHEET 2 B 5 PHE C 4 PHE C 10 -1 N SER C 8 O GLN C 17 SHEET 3 B 5 THR C 78 MET C 84 1 O LEU C 79 N MET C 7 SHEET 4 B 5 ILE C 50 ARG C 55 -1 N ILE C 50 O MET C 84 SHEET 5 B 5 LEU C 61 PHE C 62 -1 O PHE C 62 N VAL C 53 LINK OE1 GLU A 104 FE FE A 501 1555 1555 2.08 LINK OE1 GLU A 134 FE FE A 501 1555 1555 2.16 LINK OE2 GLU A 134 FE FE A 502 1555 1555 2.11 LINK ND1 HIS A 137 FE FE A 501 1555 1555 2.25 LINK OE2 GLU A 197 FE FE A 502 1555 1555 1.80 LINK OE2 GLU A 231 FE FE A 502 1555 1555 2.21 LINK NE2 HIS A 234 FE FE A 502 1555 1555 2.15 LINK FE FE A 501 O HOH A 504 1555 1555 2.11 LINK FE FE A 501 O HOH A 505 1555 1555 2.41 LINK FE FE A 501 O HOH A 506 1555 1555 2.26 LINK FE FE A 502 O HOH A 504 1555 1555 1.83 LINK FE FE A 502 O HOH A 505 1555 1555 2.31 CISPEP 1 GLN A 460 PRO A 461 0 -8.73 SITE 1 AC1 7 GLU A 104 GLU A 134 HIS A 137 FE A 502 SITE 2 AC1 7 HOH A 504 HOH A 505 HOH A 506 SITE 1 AC2 7 GLU A 134 GLU A 197 GLU A 231 HIS A 234 SITE 2 AC2 7 FE A 501 HOH A 504 HOH A 505 SITE 1 AC3 13 HIS A 96 ILE A 100 PHE A 196 THR A 201 SITE 2 AC3 13 GLN A 204 PHE A 205 GLY A 207 LEU A 208 SITE 3 AC3 13 ASP A 211 LEU A 272 THR A 273 ILE A 276 SITE 4 AC3 13 HOH A 505 CRYST1 182.555 182.555 68.111 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005478 0.003163 0.000000 0.00000 SCALE2 0.000000 0.006325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014682 0.00000