data_2ION # _entry.id 2ION # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ION pdb_00002ion 10.2210/pdb2ion/pdb RCSB RCSB039824 ? ? WWPDB D_1000039824 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2IOL 'Crystal structure of the C-terminal MA3 domain of Pdcd4 (mouse); form1' unspecified PDB 2IOS 'Crystal structure of the C-terminal MA3 domain of Pdcd4 (mouse); form3' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ION _pdbx_database_status.recvd_initial_deposition_date 2006-10-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wlodawer, A.' 1 'LaRonde-LeBlanc, N.A.' 2 # _citation.id primary _citation.title 'Structural basis for inhibition of translation by the tumor suppressor pdcd4.' _citation.journal_abbrev Mol.Cell.Biol. _citation.journal_volume 27 _citation.page_first 147 _citation.page_last 156 _citation.year 2007 _citation.journal_id_ASTM MCEBD4 _citation.country US _citation.journal_id_ISSN 0270-7306 _citation.journal_id_CSD 2044 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17060447 _citation.pdbx_database_id_DOI 10.1128/MCB.00867-06 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Laronde-Leblanc, N.' 1 ? primary 'Santhanam, A.N.' 2 ? primary 'Baker, A.R.' 3 ? primary 'Wlodawer, A.' 4 ? primary 'Colburn, N.H.' 5 ? # _cell.entry_id 2ION _cell.length_a 61.536 _cell.length_b 61.536 _cell.length_c 78.066 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ION _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Programmed Cell Death 4, Pdcd4' 17563.117 1 ? ? 'C-terminal MA3 domain, residues 322-450' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 185 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Pdcd4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRSRGRKRFVSEGDGGRLKPESY ; _entity_poly.pdbx_seq_one_letter_code_can ;GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRSRGRKRFVSEGDGGRLKPESY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLN n 1 4 PRO n 1 5 VAL n 1 6 ASN n 1 7 HIS n 1 8 LEU n 1 9 VAL n 1 10 LYS n 1 11 GLU n 1 12 ILE n 1 13 ASP n 1 14 MET n 1 15 LEU n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 TYR n 1 20 LEU n 1 21 LEU n 1 22 SER n 1 23 GLY n 1 24 ASP n 1 25 ILE n 1 26 SER n 1 27 GLU n 1 28 ALA n 1 29 GLU n 1 30 HIS n 1 31 CYS n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 LEU n 1 36 GLU n 1 37 VAL n 1 38 PRO n 1 39 HIS n 1 40 PHE n 1 41 HIS n 1 42 HIS n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 TYR n 1 47 GLU n 1 48 ALA n 1 49 ILE n 1 50 VAL n 1 51 MET n 1 52 VAL n 1 53 LEU n 1 54 GLU n 1 55 SER n 1 56 THR n 1 57 GLY n 1 58 GLU n 1 59 SER n 1 60 ALA n 1 61 PHE n 1 62 LYS n 1 63 MET n 1 64 ILE n 1 65 LEU n 1 66 ASP n 1 67 LEU n 1 68 LEU n 1 69 LYS n 1 70 SER n 1 71 LEU n 1 72 TRP n 1 73 LYS n 1 74 SER n 1 75 SER n 1 76 THR n 1 77 ILE n 1 78 THR n 1 79 ILE n 1 80 ASP n 1 81 GLN n 1 82 MET n 1 83 LYS n 1 84 ARG n 1 85 GLY n 1 86 TYR n 1 87 GLU n 1 88 ARG n 1 89 ILE n 1 90 TYR n 1 91 ASN n 1 92 GLU n 1 93 ILE n 1 94 PRO n 1 95 ASP n 1 96 ILE n 1 97 ASN n 1 98 LEU n 1 99 ASP n 1 100 VAL n 1 101 PRO n 1 102 HIS n 1 103 SER n 1 104 TYR n 1 105 SER n 1 106 VAL n 1 107 LEU n 1 108 GLU n 1 109 ARG n 1 110 PHE n 1 111 VAL n 1 112 GLU n 1 113 GLU n 1 114 CYS n 1 115 PHE n 1 116 GLN n 1 117 ALA n 1 118 GLY n 1 119 ILE n 1 120 ILE n 1 121 SER n 1 122 LYS n 1 123 GLN n 1 124 LEU n 1 125 ARG n 1 126 ASP n 1 127 LEU n 1 128 CYS n 1 129 PRO n 1 130 SER n 1 131 ARG n 1 132 SER n 1 133 ARG n 1 134 GLY n 1 135 ARG n 1 136 LYS n 1 137 ARG n 1 138 PHE n 1 139 VAL n 1 140 SER n 1 141 GLU n 1 142 GLY n 1 143 ASP n 1 144 GLY n 1 145 GLY n 1 146 ARG n 1 147 LEU n 1 148 LYS n 1 149 PRO n 1 150 GLU n 1 151 SER n 1 152 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Pdcd4, MA-3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosette(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDCD4_MOUSE _struct_ref.pdbx_db_accession Q61823 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR ; _struct_ref.pdbx_align_begin 320 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ION _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q61823 _struct_ref_seq.db_align_beg 320 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 469 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 320 _struct_ref_seq.pdbx_auth_seq_align_end 469 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ION _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;0.17 M ammonium sulfate, 0.085 M sodium acetate, 25.5% (w/v) PEG 2000 MME, 15% (v/v) glycerol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 2ION _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 1.57 _reflns.d_resolution_low 30 _reflns.number_all 24343 _reflns.number_obs 23715 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.08 _reflns.pdbx_netI_over_sigmaI 20.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.571 _reflns_shell.d_res_low 1.612 _reflns_shell.percent_possible_all 95.45 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.501 _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1605 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ION _refine.ls_number_reflns_obs 23008 _refine.ls_number_reflns_all 24343 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.57 _refine.ls_percent_reflns_obs 99.56 _refine.ls_R_factor_obs 0.1615 _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_R_work 0.15974 _refine.ls_R_factor_R_free 0.1948 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1241 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.B_iso_mean 15.253 _refine.aniso_B[1][1] 0.52 _refine.aniso_B[2][2] 0.52 _refine.aniso_B[3][3] -0.78 _refine.aniso_B[1][2] 0.26 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2IOL, Chain A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.069 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.046 _refine.overall_SU_B 1.251 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ION _refine_analyze.Luzzati_coordinate_error_obs 0.069 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.074 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1036 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1227 _refine_hist.d_res_high 1.57 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1151 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1076 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.780 1.986 ? 1578 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.968 3.000 ? 2530 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.346 5.000 ? 157 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.605 24.528 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.118 15.000 ? 225 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.201 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.105 0.200 ? 182 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1280 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 222 'X-RAY DIFFRACTION' ? r_nbd_refined 0.252 0.200 ? 321 'X-RAY DIFFRACTION' ? r_nbd_other 0.175 0.200 ? 1144 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.185 0.200 ? 581 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 625 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.218 0.200 ? 137 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.174 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.244 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.322 0.200 ? 26 'X-RAY DIFFRACTION' ? r_mcbond_it 1.591 1.500 ? 774 'X-RAY DIFFRACTION' ? r_mcbond_other 0.381 1.500 ? 275 'X-RAY DIFFRACTION' ? r_mcangle_it 1.889 2.000 ? 1146 'X-RAY DIFFRACTION' ? r_scbond_it 3.002 3.000 ? 500 'X-RAY DIFFRACTION' ? r_scangle_it 4.587 4.500 ? 416 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.571 _refine_ls_shell.d_res_low 1.612 _refine_ls_shell.number_reflns_R_work 1605 _refine_ls_shell.R_factor_R_work 0.329 _refine_ls_shell.percent_reflns_obs 95.45 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ION _struct.title 'Crystal structure of the C-terminal MA3 domain of Pdcd4 (mouse); form2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ION _struct_keywords.pdbx_keywords 'ANTITUMOR PROTEIN' _struct_keywords.text 'alpha-helical, ANTITUMOR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 6 ? GLY A 23 ? ASN A 325 GLY A 342 1 ? 18 HELX_P HELX_P2 2 ASP A 24 ? GLU A 36 ? ASP A 343 GLU A 355 1 ? 13 HELX_P HELX_P3 3 VAL A 37 ? HIS A 39 ? VAL A 356 HIS A 358 5 ? 3 HELX_P HELX_P4 4 PHE A 40 ? SER A 55 ? PHE A 359 SER A 374 1 ? 16 HELX_P HELX_P5 5 GLU A 58 ? SER A 74 ? GLU A 377 SER A 393 1 ? 17 HELX_P HELX_P6 6 THR A 78 ? VAL A 100 ? THR A 397 VAL A 419 1 ? 23 HELX_P HELX_P7 7 HIS A 102 ? ALA A 117 ? HIS A 421 ALA A 436 1 ? 16 HELX_P HELX_P8 8 SER A 121 ? LEU A 127 ? SER A 440 LEU A 446 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 VAL A 9 ? VAL A 328 . ? 3_564 ? 2 AC1 11 GLU A 18 ? GLU A 337 . ? 1_555 ? 3 AC1 11 ASP A 24 ? ASP A 343 . ? 1_555 ? 4 AC1 11 GLU A 27 ? GLU A 346 . ? 1_555 ? 5 AC1 11 PHE A 40 ? PHE A 359 . ? 3_564 ? 6 AC1 11 GLU A 43 ? GLU A 362 . ? 3_564 ? 7 AC1 11 ARG A 88 ? ARG A 407 . ? 3_564 ? 8 AC1 11 HOH C . ? HOH A 514 . ? 3_564 ? 9 AC1 11 HOH C . ? HOH A 547 . ? 1_555 ? 10 AC1 11 HOH C . ? HOH A 588 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 611 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ION _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ION _atom_sites.fract_transf_matrix[1][1] 0.016251 _atom_sites.fract_transf_matrix[1][2] 0.009382 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018765 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012810 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 320 ? ? ? A . n A 1 2 GLN 2 321 ? ? ? A . n A 1 3 GLN 3 322 322 GLN GLN A . n A 1 4 PRO 4 323 323 PRO PRO A . n A 1 5 VAL 5 324 324 VAL VAL A . n A 1 6 ASN 6 325 325 ASN ASN A . n A 1 7 HIS 7 326 326 HIS HIS A . n A 1 8 LEU 8 327 327 LEU LEU A . n A 1 9 VAL 9 328 328 VAL VAL A . n A 1 10 LYS 10 329 329 LYS LYS A . n A 1 11 GLU 11 330 330 GLU GLU A . n A 1 12 ILE 12 331 331 ILE ILE A . n A 1 13 ASP 13 332 332 ASP ASP A . n A 1 14 MET 14 333 333 MET MET A . n A 1 15 LEU 15 334 334 LEU LEU A . n A 1 16 LEU 16 335 335 LEU LEU A . n A 1 17 LYS 17 336 336 LYS LYS A . n A 1 18 GLU 18 337 337 GLU GLU A . n A 1 19 TYR 19 338 338 TYR TYR A . n A 1 20 LEU 20 339 339 LEU LEU A . n A 1 21 LEU 21 340 340 LEU LEU A . n A 1 22 SER 22 341 341 SER SER A . n A 1 23 GLY 23 342 342 GLY GLY A . n A 1 24 ASP 24 343 343 ASP ASP A . n A 1 25 ILE 25 344 344 ILE ILE A . n A 1 26 SER 26 345 345 SER SER A . n A 1 27 GLU 27 346 346 GLU GLU A . n A 1 28 ALA 28 347 347 ALA ALA A . n A 1 29 GLU 29 348 348 GLU GLU A . n A 1 30 HIS 30 349 349 HIS HIS A . n A 1 31 CYS 31 350 350 CYS CYS A . n A 1 32 LEU 32 351 351 LEU LEU A . n A 1 33 LYS 33 352 352 LYS LYS A . n A 1 34 GLU 34 353 353 GLU GLU A . n A 1 35 LEU 35 354 354 LEU LEU A . n A 1 36 GLU 36 355 355 GLU GLU A . n A 1 37 VAL 37 356 356 VAL VAL A . n A 1 38 PRO 38 357 357 PRO PRO A . n A 1 39 HIS 39 358 358 HIS HIS A . n A 1 40 PHE 40 359 359 PHE PHE A . n A 1 41 HIS 41 360 360 HIS HIS A . n A 1 42 HIS 42 361 361 HIS HIS A . n A 1 43 GLU 43 362 362 GLU GLU A . n A 1 44 LEU 44 363 363 LEU LEU A . n A 1 45 VAL 45 364 364 VAL VAL A . n A 1 46 TYR 46 365 365 TYR TYR A . n A 1 47 GLU 47 366 366 GLU GLU A . n A 1 48 ALA 48 367 367 ALA ALA A . n A 1 49 ILE 49 368 368 ILE ILE A . n A 1 50 VAL 50 369 369 VAL VAL A . n A 1 51 MET 51 370 370 MET MET A . n A 1 52 VAL 52 371 371 VAL VAL A . n A 1 53 LEU 53 372 372 LEU LEU A . n A 1 54 GLU 54 373 373 GLU GLU A . n A 1 55 SER 55 374 374 SER SER A . n A 1 56 THR 56 375 375 THR THR A . n A 1 57 GLY 57 376 376 GLY GLY A . n A 1 58 GLU 58 377 377 GLU GLU A . n A 1 59 SER 59 378 378 SER SER A . n A 1 60 ALA 60 379 379 ALA ALA A . n A 1 61 PHE 61 380 380 PHE PHE A . n A 1 62 LYS 62 381 381 LYS LYS A . n A 1 63 MET 63 382 382 MET MET A . n A 1 64 ILE 64 383 383 ILE ILE A . n A 1 65 LEU 65 384 384 LEU LEU A . n A 1 66 ASP 66 385 385 ASP ASP A . n A 1 67 LEU 67 386 386 LEU LEU A . n A 1 68 LEU 68 387 387 LEU LEU A . n A 1 69 LYS 69 388 388 LYS LYS A . n A 1 70 SER 70 389 389 SER SER A . n A 1 71 LEU 71 390 390 LEU LEU A . n A 1 72 TRP 72 391 391 TRP TRP A . n A 1 73 LYS 73 392 392 LYS LYS A . n A 1 74 SER 74 393 393 SER SER A . n A 1 75 SER 75 394 394 SER SER A . n A 1 76 THR 76 395 395 THR THR A . n A 1 77 ILE 77 396 396 ILE ILE A . n A 1 78 THR 78 397 397 THR THR A . n A 1 79 ILE 79 398 398 ILE ILE A . n A 1 80 ASP 80 399 399 ASP ASP A . n A 1 81 GLN 81 400 400 GLN GLN A . n A 1 82 MET 82 401 401 MET MET A . n A 1 83 LYS 83 402 402 LYS LYS A . n A 1 84 ARG 84 403 403 ARG ARG A . n A 1 85 GLY 85 404 404 GLY GLY A . n A 1 86 TYR 86 405 405 TYR TYR A . n A 1 87 GLU 87 406 406 GLU GLU A . n A 1 88 ARG 88 407 407 ARG ARG A . n A 1 89 ILE 89 408 408 ILE ILE A . n A 1 90 TYR 90 409 409 TYR TYR A . n A 1 91 ASN 91 410 410 ASN ASN A . n A 1 92 GLU 92 411 411 GLU GLU A . n A 1 93 ILE 93 412 412 ILE ILE A . n A 1 94 PRO 94 413 413 PRO PRO A . n A 1 95 ASP 95 414 414 ASP ASP A . n A 1 96 ILE 96 415 415 ILE ILE A . n A 1 97 ASN 97 416 416 ASN ASN A . n A 1 98 LEU 98 417 417 LEU LEU A . n A 1 99 ASP 99 418 418 ASP ASP A . n A 1 100 VAL 100 419 419 VAL VAL A . n A 1 101 PRO 101 420 420 PRO PRO A . n A 1 102 HIS 102 421 421 HIS HIS A . n A 1 103 SER 103 422 422 SER SER A . n A 1 104 TYR 104 423 423 TYR TYR A . n A 1 105 SER 105 424 424 SER SER A . n A 1 106 VAL 106 425 425 VAL VAL A . n A 1 107 LEU 107 426 426 LEU LEU A . n A 1 108 GLU 108 427 427 GLU GLU A . n A 1 109 ARG 109 428 428 ARG ARG A . n A 1 110 PHE 110 429 429 PHE PHE A . n A 1 111 VAL 111 430 430 VAL VAL A . n A 1 112 GLU 112 431 431 GLU GLU A . n A 1 113 GLU 113 432 432 GLU GLU A . n A 1 114 CYS 114 433 433 CYS CYS A . n A 1 115 PHE 115 434 434 PHE PHE A . n A 1 116 GLN 116 435 435 GLN GLN A . n A 1 117 ALA 117 436 436 ALA ALA A . n A 1 118 GLY 118 437 437 GLY GLY A . n A 1 119 ILE 119 438 438 ILE ILE A . n A 1 120 ILE 120 439 439 ILE ILE A . n A 1 121 SER 121 440 440 SER SER A . n A 1 122 LYS 122 441 441 LYS LYS A . n A 1 123 GLN 123 442 442 GLN GLN A . n A 1 124 LEU 124 443 443 LEU LEU A . n A 1 125 ARG 125 444 444 ARG ARG A . n A 1 126 ASP 126 445 445 ASP ASP A . n A 1 127 LEU 127 446 446 LEU LEU A . n A 1 128 CYS 128 447 447 CYS CYS A . n A 1 129 PRO 129 448 448 PRO PRO A . n A 1 130 SER 130 449 449 SER SER A . n A 1 131 ARG 131 450 450 ARG ARG A . n A 1 132 SER 132 451 ? ? ? A . n A 1 133 ARG 133 452 ? ? ? A . n A 1 134 GLY 134 453 ? ? ? A . n A 1 135 ARG 135 454 ? ? ? A . n A 1 136 LYS 136 455 ? ? ? A . n A 1 137 ARG 137 456 ? ? ? A . n A 1 138 PHE 138 457 ? ? ? A . n A 1 139 VAL 139 458 ? ? ? A . n A 1 140 SER 140 459 ? ? ? A . n A 1 141 GLU 141 460 ? ? ? A . n A 1 142 GLY 142 461 ? ? ? A . n A 1 143 ASP 143 462 ? ? ? A . n A 1 144 GLY 144 463 ? ? ? A . n A 1 145 GLY 145 464 ? ? ? A . n A 1 146 ARG 146 465 ? ? ? A . n A 1 147 LEU 147 466 ? ? ? A . n A 1 148 LYS 148 467 ? ? ? A . n A 1 149 PRO 149 468 ? ? ? A . n A 1 150 GLU 150 469 ? ? ? A . n A 1 151 SER 151 470 ? ? ? A . n A 1 152 TYR 152 471 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL A . C 3 HOH 1 472 1 HOH HOH A . C 3 HOH 2 473 2 HOH HOH A . C 3 HOH 3 474 3 HOH HOH A . C 3 HOH 4 475 4 HOH HOH A . C 3 HOH 5 476 5 HOH HOH A . C 3 HOH 6 477 6 HOH HOH A . C 3 HOH 7 478 7 HOH HOH A . C 3 HOH 8 479 8 HOH HOH A . C 3 HOH 9 480 9 HOH HOH A . C 3 HOH 10 481 10 HOH HOH A . C 3 HOH 11 482 11 HOH HOH A . C 3 HOH 12 483 12 HOH HOH A . C 3 HOH 13 484 13 HOH HOH A . C 3 HOH 14 485 14 HOH HOH A . C 3 HOH 15 486 15 HOH HOH A . C 3 HOH 16 487 16 HOH HOH A . C 3 HOH 17 488 17 HOH HOH A . C 3 HOH 18 489 18 HOH HOH A . C 3 HOH 19 490 19 HOH HOH A . C 3 HOH 20 491 20 HOH HOH A . C 3 HOH 21 492 21 HOH HOH A . C 3 HOH 22 493 22 HOH HOH A . C 3 HOH 23 494 23 HOH HOH A . C 3 HOH 24 495 24 HOH HOH A . C 3 HOH 25 496 25 HOH HOH A . C 3 HOH 26 497 26 HOH HOH A . C 3 HOH 27 498 27 HOH HOH A . C 3 HOH 28 499 28 HOH HOH A . C 3 HOH 29 500 29 HOH HOH A . C 3 HOH 30 501 30 HOH HOH A . C 3 HOH 31 502 31 HOH HOH A . C 3 HOH 32 503 32 HOH HOH A . C 3 HOH 33 504 33 HOH HOH A . C 3 HOH 34 505 34 HOH HOH A . C 3 HOH 35 506 35 HOH HOH A . C 3 HOH 36 507 36 HOH HOH A . C 3 HOH 37 508 37 HOH HOH A . C 3 HOH 38 509 38 HOH HOH A . C 3 HOH 39 510 39 HOH HOH A . C 3 HOH 40 511 40 HOH HOH A . C 3 HOH 41 512 41 HOH HOH A . C 3 HOH 42 513 42 HOH HOH A . C 3 HOH 43 514 43 HOH HOH A . C 3 HOH 44 515 44 HOH HOH A . C 3 HOH 45 516 45 HOH HOH A . C 3 HOH 46 517 46 HOH HOH A . C 3 HOH 47 518 47 HOH HOH A . C 3 HOH 48 519 48 HOH HOH A . C 3 HOH 49 520 49 HOH HOH A . C 3 HOH 50 521 50 HOH HOH A . C 3 HOH 51 522 51 HOH HOH A . C 3 HOH 52 523 52 HOH HOH A . C 3 HOH 53 524 53 HOH HOH A . C 3 HOH 54 525 54 HOH HOH A . C 3 HOH 55 526 55 HOH HOH A . C 3 HOH 56 527 56 HOH HOH A . C 3 HOH 57 528 57 HOH HOH A . C 3 HOH 58 529 58 HOH HOH A . C 3 HOH 59 530 59 HOH HOH A . C 3 HOH 60 531 60 HOH HOH A . C 3 HOH 61 532 61 HOH HOH A . C 3 HOH 62 533 62 HOH HOH A . C 3 HOH 63 534 63 HOH HOH A . C 3 HOH 64 535 64 HOH HOH A . C 3 HOH 65 536 65 HOH HOH A . C 3 HOH 66 537 66 HOH HOH A . C 3 HOH 67 538 67 HOH HOH A . C 3 HOH 68 539 68 HOH HOH A . C 3 HOH 69 540 69 HOH HOH A . C 3 HOH 70 541 70 HOH HOH A . C 3 HOH 71 542 71 HOH HOH A . C 3 HOH 72 543 72 HOH HOH A . C 3 HOH 73 544 73 HOH HOH A . C 3 HOH 74 545 74 HOH HOH A . C 3 HOH 75 546 75 HOH HOH A . C 3 HOH 76 547 77 HOH HOH A . C 3 HOH 77 548 78 HOH HOH A . C 3 HOH 78 549 79 HOH HOH A . C 3 HOH 79 550 80 HOH HOH A . C 3 HOH 80 551 81 HOH HOH A . C 3 HOH 81 552 82 HOH HOH A . C 3 HOH 82 553 83 HOH HOH A . C 3 HOH 83 554 84 HOH HOH A . C 3 HOH 84 555 85 HOH HOH A . C 3 HOH 85 556 86 HOH HOH A . C 3 HOH 86 557 87 HOH HOH A . C 3 HOH 87 558 88 HOH HOH A . C 3 HOH 88 559 89 HOH HOH A . C 3 HOH 89 560 90 HOH HOH A . C 3 HOH 90 561 91 HOH HOH A . C 3 HOH 91 562 92 HOH HOH A . C 3 HOH 92 563 93 HOH HOH A . C 3 HOH 93 564 94 HOH HOH A . C 3 HOH 94 565 95 HOH HOH A . C 3 HOH 95 566 96 HOH HOH A . C 3 HOH 96 567 97 HOH HOH A . C 3 HOH 97 568 98 HOH HOH A . C 3 HOH 98 569 99 HOH HOH A . C 3 HOH 99 570 100 HOH HOH A . C 3 HOH 100 571 101 HOH HOH A . C 3 HOH 101 572 102 HOH HOH A . C 3 HOH 102 573 103 HOH HOH A . C 3 HOH 103 574 104 HOH HOH A . C 3 HOH 104 575 105 HOH HOH A . C 3 HOH 105 576 106 HOH HOH A . C 3 HOH 106 577 107 HOH HOH A . C 3 HOH 107 578 108 HOH HOH A . C 3 HOH 108 579 109 HOH HOH A . C 3 HOH 109 580 110 HOH HOH A . C 3 HOH 110 581 111 HOH HOH A . C 3 HOH 111 582 112 HOH HOH A . C 3 HOH 112 583 113 HOH HOH A . C 3 HOH 113 584 114 HOH HOH A . C 3 HOH 114 585 115 HOH HOH A . C 3 HOH 115 586 116 HOH HOH A . C 3 HOH 116 587 117 HOH HOH A . C 3 HOH 117 588 118 HOH HOH A . C 3 HOH 118 589 119 HOH HOH A . C 3 HOH 119 590 120 HOH HOH A . C 3 HOH 120 591 121 HOH HOH A . C 3 HOH 121 592 122 HOH HOH A . C 3 HOH 122 593 123 HOH HOH A . C 3 HOH 123 594 124 HOH HOH A . C 3 HOH 124 595 125 HOH HOH A . C 3 HOH 125 596 126 HOH HOH A . C 3 HOH 126 597 127 HOH HOH A . C 3 HOH 127 598 128 HOH HOH A . C 3 HOH 128 599 129 HOH HOH A . C 3 HOH 129 600 130 HOH HOH A . C 3 HOH 130 601 131 HOH HOH A . C 3 HOH 131 602 132 HOH HOH A . C 3 HOH 132 603 133 HOH HOH A . C 3 HOH 133 604 134 HOH HOH A . C 3 HOH 134 605 135 HOH HOH A . C 3 HOH 135 606 136 HOH HOH A . C 3 HOH 136 607 137 HOH HOH A . C 3 HOH 137 608 138 HOH HOH A . C 3 HOH 138 609 139 HOH HOH A . C 3 HOH 139 610 140 HOH HOH A . C 3 HOH 140 611 141 HOH HOH A . C 3 HOH 141 612 142 HOH HOH A . C 3 HOH 142 613 143 HOH HOH A . C 3 HOH 143 614 144 HOH HOH A . C 3 HOH 144 615 145 HOH HOH A . C 3 HOH 145 616 146 HOH HOH A . C 3 HOH 146 617 147 HOH HOH A . C 3 HOH 147 618 148 HOH HOH A . C 3 HOH 148 619 149 HOH HOH A . C 3 HOH 149 620 150 HOH HOH A . C 3 HOH 150 621 151 HOH HOH A . C 3 HOH 151 622 152 HOH HOH A . C 3 HOH 152 623 153 HOH HOH A . C 3 HOH 153 624 154 HOH HOH A . C 3 HOH 154 625 155 HOH HOH A . C 3 HOH 155 626 156 HOH HOH A . C 3 HOH 156 627 157 HOH HOH A . C 3 HOH 157 628 158 HOH HOH A . C 3 HOH 158 629 159 HOH HOH A . C 3 HOH 159 630 160 HOH HOH A . C 3 HOH 160 631 161 HOH HOH A . C 3 HOH 161 632 162 HOH HOH A . C 3 HOH 162 633 163 HOH HOH A . C 3 HOH 163 634 164 HOH HOH A . C 3 HOH 164 635 165 HOH HOH A . C 3 HOH 165 636 166 HOH HOH A . C 3 HOH 166 637 167 HOH HOH A . C 3 HOH 167 638 168 HOH HOH A . C 3 HOH 168 639 169 HOH HOH A . C 3 HOH 169 640 170 HOH HOH A . C 3 HOH 170 641 172 HOH HOH A . C 3 HOH 171 642 173 HOH HOH A . C 3 HOH 172 643 174 HOH HOH A . C 3 HOH 173 644 175 HOH HOH A . C 3 HOH 174 645 176 HOH HOH A . C 3 HOH 175 646 177 HOH HOH A . C 3 HOH 176 647 178 HOH HOH A . C 3 HOH 177 648 179 HOH HOH A . C 3 HOH 178 649 181 HOH HOH A . C 3 HOH 179 650 182 HOH HOH A . C 3 HOH 180 651 184 HOH HOH A . C 3 HOH 181 652 185 HOH HOH A . C 3 HOH 182 653 186 HOH HOH A . C 3 HOH 183 654 187 HOH HOH A . C 3 HOH 184 655 188 HOH HOH A . C 3 HOH 185 656 189 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-14 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' 345DTB ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 332 ? A O A HOH 618 ? ? 1.81 2 1 O A HOH 613 ? ? O A HOH 637 ? ? 2.07 3 1 SG A CYS 350 ? B O A HOH 565 ? ? 2.09 4 1 O A HOH 614 ? ? O A HOH 649 ? ? 2.15 5 1 NE2 A GLN 435 ? B O A HOH 523 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 496 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 646 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_564 _pdbx_validate_symm_contact.dist 1.75 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 445 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 445 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 445 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.28 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation -6.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 377 ? CG ? A GLU 58 CG 2 1 Y 1 A GLU 377 ? CD ? A GLU 58 CD 3 1 Y 1 A GLU 377 ? OE1 ? A GLU 58 OE1 4 1 Y 1 A GLU 377 ? OE2 ? A GLU 58 OE2 5 1 Y 1 A LYS 381 ? CD ? A LYS 62 CD 6 1 Y 1 A LYS 381 ? CE ? A LYS 62 CE 7 1 Y 1 A LYS 381 ? NZ ? A LYS 62 NZ 8 1 Y 1 A LYS 402 ? CD ? A LYS 83 CD 9 1 Y 1 A LYS 402 ? CE ? A LYS 83 CE 10 1 Y 1 A LYS 402 ? NZ ? A LYS 83 NZ 11 1 Y 1 A HIS 421 ? CG ? A HIS 102 CG 12 1 Y 1 A HIS 421 ? ND1 ? A HIS 102 ND1 13 1 Y 1 A HIS 421 ? CD2 ? A HIS 102 CD2 14 1 Y 1 A HIS 421 ? CE1 ? A HIS 102 CE1 15 1 Y 1 A HIS 421 ? NE2 ? A HIS 102 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 320 ? A GLY 1 2 1 Y 1 A GLN 321 ? A GLN 2 3 1 Y 1 A SER 451 ? A SER 132 4 1 Y 1 A ARG 452 ? A ARG 133 5 1 Y 1 A GLY 453 ? A GLY 134 6 1 Y 1 A ARG 454 ? A ARG 135 7 1 Y 1 A LYS 455 ? A LYS 136 8 1 Y 1 A ARG 456 ? A ARG 137 9 1 Y 1 A PHE 457 ? A PHE 138 10 1 Y 1 A VAL 458 ? A VAL 139 11 1 Y 1 A SER 459 ? A SER 140 12 1 Y 1 A GLU 460 ? A GLU 141 13 1 Y 1 A GLY 461 ? A GLY 142 14 1 Y 1 A ASP 462 ? A ASP 143 15 1 Y 1 A GLY 463 ? A GLY 144 16 1 Y 1 A GLY 464 ? A GLY 145 17 1 Y 1 A ARG 465 ? A ARG 146 18 1 Y 1 A LEU 466 ? A LEU 147 19 1 Y 1 A LYS 467 ? A LYS 148 20 1 Y 1 A PRO 468 ? A PRO 149 21 1 Y 1 A GLU 469 ? A GLU 150 22 1 Y 1 A SER 470 ? A SER 151 23 1 Y 1 A TYR 471 ? A TYR 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2IOL _pdbx_initial_refinement_model.details 'PDB ENTRY 2IOL, Chain A' #