HEADER TRANSFERASE 15-OCT-06 2IRM TITLE CRYSTAL STRUCTURE OF MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 TITLE 2 INTERACTING PROTEIN 1 FROM ANOPHELES GAMBIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 COMPND 3 INTERACTING PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 3 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 4 ORGANISM_TAXID: 7165; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BS-PSGX4 KEYWDS TAK1-BINDING PROTEIN, TAB1, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KEYWDS 2 KINASE 7 INTERACTING PROTEIN 1, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,J.B.BONANNO,L.PELLETIER,J.C.FREEMAN,S.WASSERMAN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,L.SHAPIRO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 7 16-OCT-24 2IRM 1 REMARK REVDAT 6 30-AUG-23 2IRM 1 REMARK REVDAT 5 03-FEB-21 2IRM 1 AUTHOR JRNL REVDAT 4 14-NOV-18 2IRM 1 AUTHOR REVDAT 3 13-JUL-11 2IRM 1 VERSN REVDAT 2 25-MAR-08 2IRM 1 VERSN REVDAT 1 14-NOV-06 2IRM 0 JRNL AUTH S.C.ALMO,J.B.BONANNO,J.M.SAUDER,S.EMTAGE,T.P.DILORENZO, JRNL AUTH 2 V.MALASHKEVICH,S.R.WASSERMAN,S.SWAMINATHAN,S.ESWARAMOORTHY, JRNL AUTH 3 R.AGARWAL,D.KUMARAN,M.MADEGOWDA,S.RAGUMANI,Y.PATSKOVSKY, JRNL AUTH 4 J.ALVARADO,U.A.RAMAGOPAL,J.FABER-BARATA,M.R.CHANCE,A.SALI, JRNL AUTH 5 A.FISER,Z.Y.ZHANG,D.S.LAWRENCE,S.K.BURLEY JRNL TITL STRUCTURAL GENOMICS OF PROTEIN PHOSPHATASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 121 2007 JRNL REFN ISSN 1345-711X JRNL PMID 18058037 JRNL DOI 10.1007/S10969-007-9036-1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 10523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : 4.16000 REMARK 3 B33 (A**2) : -6.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.732 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.431 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.330 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2648 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3587 ; 1.341 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 6.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;38.855 ;24.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;21.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1995 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1231 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1811 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 0.341 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 0.618 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1017 ; 0.750 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 1.284 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6180 -2.8890 22.7320 REMARK 3 T TENSOR REMARK 3 T11: -.0349 T22: .1339 REMARK 3 T33: -.1282 T12: -.0805 REMARK 3 T13: -.0436 T23: -.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.8740 L22: 5.0055 REMARK 3 L33: 5.6472 L12: .2530 REMARK 3 L13: 1.1533 L23: 2.8054 REMARK 3 S TENSOR REMARK 3 S11: -.0349 S12: -.4783 S13: .2225 REMARK 3 S21: .5312 S22: -.3004 S23: -.1107 REMARK 3 S31: -.5218 S32: .0262 S33: .3353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2410 -1.7400 18.0330 REMARK 3 T TENSOR REMARK 3 T11: -.0095 T22: .3383 REMARK 3 T33: .0155 T12: .0917 REMARK 3 T13: -.0995 T23: -.1383 REMARK 3 L TENSOR REMARK 3 L11: 3.3407 L22: 5.4494 REMARK 3 L33: 5.3192 L12: .9065 REMARK 3 L13: .6677 L23: 2.6230 REMARK 3 S TENSOR REMARK 3 S11: .0885 S12: -.4363 S13: .4647 REMARK 3 S21: -.4242 S22: -.8595 S23: 1.1955 REMARK 3 S31: -.6036 S32: -1.0906 S33: .7711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 55.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : 0.18900 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2J4O, MODIFIED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M LITHIUM SULFATE, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.88650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.88650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.88650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.88650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 10 REMARK 465 THR A 11 REMARK 465 LYS A 12 REMARK 465 ALA A 134 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 MET A 137 REMARK 465 ASN A 138 REMARK 465 GLN A 139 REMARK 465 TYR A 140 REMARK 465 GLU A 141 REMARK 465 ILE A 142 REMARK 465 SER A 143 REMARK 465 GLN A 144 REMARK 465 GLN A 145 REMARK 465 PHE A 146 REMARK 465 GLU A 147 REMARK 465 ASN A 148 REMARK 465 ALA A 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 13 OG REMARK 470 SER A 133 OG REMARK 470 VAL A 149 CG1 CG2 REMARK 470 TYR A 366 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 TRP A 14 OE1 GLN A 79 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 15 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 CYS A 250 CB - CA - C ANGL. DEV. = 14.9 DEGREES REMARK 500 ASN A 251 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO A 296 CB - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 14 129.10 -30.47 REMARK 500 ASP A 16 -28.38 -37.08 REMARK 500 LEU A 18 142.86 -38.23 REMARK 500 ASN A 69 3.27 59.98 REMARK 500 LEU A 86 -25.99 -150.04 REMARK 500 ASN A 94 -71.69 -86.61 REMARK 500 LEU A 132 -28.50 -151.35 REMARK 500 GLN A 151 -43.40 67.58 REMARK 500 ASN A 158 41.51 -79.26 REMARK 500 LEU A 160 23.09 -71.54 REMARK 500 ARG A 173 78.70 46.77 REMARK 500 ASP A 192 -146.36 -114.30 REMARK 500 ASP A 195 -150.18 59.65 REMARK 500 HIS A 206 68.95 -101.94 REMARK 500 PRO A 231 -83.18 -36.18 REMARK 500 LEU A 232 58.07 -141.62 REMARK 500 CYS A 237 174.06 177.63 REMARK 500 LYS A 244 -79.45 -99.25 REMARK 500 PHE A 252 4.01 87.75 REMARK 500 GLU A 264 83.32 -150.55 REMARK 500 ASP A 298 8.96 86.92 REMARK 500 ALA A 299 18.19 42.69 REMARK 500 SER A 300 -18.42 -146.67 REMARK 500 SER A 318 -36.07 -130.86 REMARK 500 HIS A 346 106.59 -49.26 REMARK 500 ARG A 347 73.74 -66.81 REMARK 500 VAL A 349 72.63 66.29 REMARK 500 ASN A 352 11.56 -158.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 13 TRP A 14 -94.24 REMARK 500 LEU A 87 GLY A 88 -41.95 REMARK 500 ASP A 195 THR A 196 -30.06 REMARK 500 ASP A 249 CYS A 250 141.71 REMARK 500 CYS A 250 ASN A 251 114.14 REMARK 500 PHE A 295 PRO A 296 -94.39 REMARK 500 PRO A 296 GLY A 297 -139.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-8880Z RELATED DB: TARGETDB DBREF 2IRM A 10 367 UNP Q7QD46 Q7QD46_ANOGA 10 367 SEQRES 1 A 358 ARG THR LYS SER TRP THR ASP ASP LEU LYS VAL CYS ASN SEQRES 2 A 358 GLN THR GLY VAL GLY GLU ALA ILE ASN GLN ILE TYR LYS SEQRES 3 A 358 ASP ASP GLY ARG ARG CYS GLU GLY TYR GLU SER ARG ASP SEQRES 4 A 358 LYS LYS CYS LEU CYS ILE SER ASP ASN ASN THR SER LEU SEQRES 5 A 358 TYR ALA ILE LEU SER GLY HIS ASN GLY VAL THR VAL ALA SEQRES 6 A 358 GLU ASN ALA LEU GLN GLU MET ALA ALA GLU LEU LEU LEU SEQRES 7 A 358 GLY GLN LEU ASN VAL CYS ASN THR ASP GLU ALA VAL LYS SEQRES 8 A 358 GLU LEU ILE ARG GLN SER PHE MET SER VAL GLU LYS GLY SEQRES 9 A 358 TYR PHE ASP SER ILE ASN PRO HIS VAL ALA THR LYS THR SEQRES 10 A 358 ALA ILE GLN LEU HIS LEU SER ALA ASP GLY MET ASN GLN SEQRES 11 A 358 TYR GLU ILE SER GLN GLN PHE GLU ASN VAL LEU GLN LYS SEQRES 12 A 358 LEU ASP SER LEU ASN ASN ALA LEU SER VAL GLY SER SER SEQRES 13 A 358 ALA VAL LEU ALA LEU ILE HIS ARG SER HIS LEU TYR LEU SEQRES 14 A 358 GLY ASN ILE GLY ASN CYS ARG ALA LEU LEU CYS LYS THR SEQRES 15 A 358 ASP GLU HIS ASP THR LEU THR VAL THR GLN LEU SER VAL SEQRES 16 A 358 ASP HIS ASN LEU LEU ASN ALA GLU GLU ALA ALA ARG LEU SEQRES 17 A 358 PHE ARG LEU GLY LEU MET ALA GLN ASN PHE GLU GLY VAL SEQRES 18 A 358 PRO LEU TYR SER THR ARG CYS ILE GLY ASN TYR LEU GLY SEQRES 19 A 358 LYS ALA GLY TYR LYS ASP CYS ASN PHE LEU SER SER ALA SEQRES 20 A 358 THR ALA GLU PRO VAL ILE PHE GLU PRO GLU ILE VAL GLY SEQRES 21 A 358 GLY ILE GLN ILE THR PRO ALA CYS ARG PHE LEU VAL LEU SEQRES 22 A 358 MET SER SER GLY LEU CYS ARG ALA LEU HIS GLU ILE PHE SEQRES 23 A 358 PRO GLY ASP ALA SER THR GLY ASN ARG GLU LEU VAL ARG SEQRES 24 A 358 MET ILE SER GLU GLU PHE GLN ASN GLN SER THR LEU GLY SEQRES 25 A 358 GLY VAL ALA GLN SER VAL VAL HIS ARG ILE VAL GLN ALA SEQRES 26 A 358 HIS HIS ASP THR TYR MET GLN LEU VAL GLU GLU HIS ARG SEQRES 27 A 358 SER VAL THR PHE ASN SER ARG ASP ASP VAL THR LEU LEU SEQRES 28 A 358 ILE ARG ASN PHE ASN TYR ALA HELIX 1 1 VAL A 71 LEU A 85 1 15 HELIX 2 2 THR A 95 ILE A 118 1 24 HELIX 3 3 ILE A 118 HIS A 131 1 14 HELIX 4 4 LYS A 152 ASN A 158 1 7 HELIX 5 5 ASN A 210 ARG A 219 1 10 HELIX 6 6 MET A 223 GLU A 228 5 6 HELIX 7 7 ASN A 240 ALA A 245 1 6 HELIX 8 8 GLY A 246 CYS A 250 5 5 HELIX 9 9 SER A 284 PHE A 295 1 12 HELIX 10 10 SER A 300 PHE A 314 1 15 HELIX 11 11 THR A 319 GLU A 344 1 26 SHEET 1 A 5 THR A 24 ALA A 29 0 SHEET 2 A 5 VAL A 357 ASN A 363 -1 O VAL A 357 N ALA A 29 SHEET 3 A 5 CYS A 277 MET A 283 -1 N LEU A 280 O ARG A 362 SHEET 4 A 5 ARG A 185 LYS A 190 -1 N ARG A 185 O MET A 283 SHEET 5 A 5 THR A 198 GLN A 201 -1 O THR A 198 N LYS A 190 SHEET 1 B 3 ARG A 40 GLU A 42 0 SHEET 2 B 3 GLN A 32 TYR A 34 -1 N ILE A 33 O CYS A 41 SHEET 3 B 3 SER A 353 ARG A 354 -1 O ARG A 354 N GLN A 32 SHEET 1 C 4 ASP A 48 ILE A 54 0 SHEET 2 C 4 THR A 59 HIS A 68 -1 O LEU A 65 N LYS A 49 SHEET 3 C 4 GLY A 163 HIS A 172 -1 O GLY A 163 N HIS A 68 SHEET 4 C 4 ILE A 238 GLY A 239 -1 O ILE A 238 N SER A 164 SHEET 1 D 5 ASP A 48 ILE A 54 0 SHEET 2 D 5 THR A 59 HIS A 68 -1 O LEU A 65 N LYS A 49 SHEET 3 D 5 GLY A 163 HIS A 172 -1 O GLY A 163 N HIS A 68 SHEET 4 D 5 HIS A 175 ILE A 181 -1 O TYR A 177 N LEU A 170 SHEET 5 D 5 GLU A 266 GLN A 272 -1 O GLU A 266 N ASN A 180 SSBOND 1 CYS A 51 CYS A 53 1555 1555 2.07 CRYST1 121.773 73.773 74.509 90.00 116.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008212 0.000000 0.004177 0.00000 SCALE2 0.000000 0.013555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015058 0.00000