data_2IRO
# 
_entry.id   2IRO 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2IRO         pdb_00002iro 10.2210/pdb2iro/pdb 
RCSB  RCSB039932   ?            ?                   
WWPDB D_1000039932 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2007-02-20 
2 'Structure model' 1 1 2008-05-01 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-03-09 
5 'Structure model' 1 4 2024-05-29 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_struct_assembly  
3 4 'Structure model' pdbx_struct_oper_list 
4 5 'Structure model' chem_comp_atom        
5 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2IRO 
_pdbx_database_status.recvd_initial_deposition_date   2006-10-16 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          2IRN 
_pdbx_database_related.details        'Similar RNA sequence with GU pairs reversed' 
_pdbx_database_related.content_type   unspecified 
# 
_audit_author.name           'Tolbert, B.S.' 
_audit_author.pdbx_ordinal   1 
# 
_citation.id                        primary 
_citation.title                     
;NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
;
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            46 
_citation.page_first                1511 
_citation.page_last                 1522 
_citation.year                      2007 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   17279616 
_citation.pdbx_database_id_DOI      10.1021/bi061350m 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Tolbert, B.S.'   1 ? 
primary 'Kennedy, S.D.'   2 ? 
primary 'Schroeder, S.J.' 3 ? 
primary 'Krugh, T.R.'     4 ? 
primary 'Turner, D.H.'    5 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           "5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'" 
_entity.formula_weight             2887.767 
_entity.pdbx_number_of_molecules   2 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       GCGGAUGCU 
_entity_poly.pdbx_seq_one_letter_code_can   GCGGAUGCU 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 G n 
1 2 C n 
1 3 G n 
1 4 G n 
1 5 A n 
1 6 U n 
1 7 G n 
1 8 C n 
1 9 U n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 G 1 1  1  G G A . n 
A 1 2 C 2 2  2  C C A . n 
A 1 3 G 3 3  3  G G A . n 
A 1 4 G 4 4  4  G G A . n 
A 1 5 A 5 5  5  A A A . n 
A 1 6 U 6 6  6  U U A . n 
A 1 7 G 7 7  7  G G A . n 
A 1 8 C 8 8  8  C C A . n 
A 1 9 U 9 9  9  U U A . n 
B 1 1 G 1 10 10 G G B . n 
B 1 2 C 2 11 11 C C B . n 
B 1 3 G 3 12 12 G G B . n 
B 1 4 G 4 13 13 G G B . n 
B 1 5 A 5 14 14 A A B . n 
B 1 6 U 6 15 15 U U B . n 
B 1 7 G 7 16 16 G G B . n 
B 1 8 C 8 17 17 C C B . n 
B 1 9 U 9 18 18 U U B . n 
# 
_cell.entry_id           2IRO 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         2IRO 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          2IRO 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      ? 
_exptl_crystal.density_percent_sol   ? 
_exptl_crystal.description           ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           ? 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             ? 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_database_PDB_matrix.entry_id          2IRO 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  2IRO 
_struct.title                     'The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2IRO 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'RNA INTERNAL LOOPS, SHEARED GA PAIRS, SHEARED GU PAIRS, NON CANONICAL PAIRS, THERMODYNAMICS, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2IRO 
_struct_ref.pdbx_db_accession          2IRO 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2IRO A 1 ? 9 ? 2IRO 1  ? 9  ? 1  9  
2 1 2IRO B 1 ? 9 ? 2IRO 10 ? 18 ? 10 18 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog2  hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog3  hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog4  hydrog ? ? A G 1 N1 ? ? ? 1_555 B U 9 O2 ? ? A G 1 B U 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR  ? ? ? 
hydrog5  hydrog ? ? A G 1 O6 ? ? ? 1_555 B U 9 N3 ? ? A G 1 B U 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR  ? ? ? 
hydrog6  hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog7  hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog8  hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog9  hydrog ? ? A G 3 N2 ? ? ? 1_555 B U 6 O4 ? ? A G 3 B U 15 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? 
hydrog10 hydrog ? ? A G 3 N1 ? ? ? 1_555 B G 7 O6 ? ? A G 3 B G 16 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? 
hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B A 5 N7 ? ? A G 4 B A 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ? ? ? 
hydrog12 hydrog ? ? A G 4 N3 ? ? ? 1_555 B A 5 N6 ? ? A G 4 B A 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ? ? ? 
hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B G 4 N3 ? ? A A 5 B G 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ? ? ? 
hydrog14 hydrog ? ? A A 5 N7 ? ? ? 1_555 B G 4 N2 ? ? A A 5 B G 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ? ? ? 
hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B G 3 N2 ? ? A U 6 B G 12 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? 
hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog19 hydrog ? ? A G 7 N1 ? ? ? 1_555 B G 3 N3 ? ? A G 7 B G 12 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? 
hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog23 hydrog ? ? A U 9 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 9 B G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR  ? ? ? 
hydrog24 hydrog ? ? A U 9 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 9 B G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR  ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
_pdbx_nmr_ensemble.entry_id                                      2IRO 
_pdbx_nmr_ensemble.conformers_calculated_total_number            30 
_pdbx_nmr_ensemble.conformers_submitted_total_number             15 
_pdbx_nmr_ensemble.conformer_selection_criteria                  
'structures with the least restraint violations,structures with the lowest energy' 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.entry_id             2IRO 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.selection_criteria   'fewest violations,lowest energy' 
# 
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.contents         '1 mM Duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90%H2O, 10%D2O' 
_pdbx_nmr_sample_details.solvent_system   '90% H2O/10% D2O' 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.temperature         278 
_pdbx_nmr_exptl_sample_conditions.pressure            ? 
_pdbx_nmr_exptl_sample_conditions.pH                  5.18 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      ? 
_pdbx_nmr_exptl_sample_conditions.pressure_units      . 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
loop_
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.type 
_pdbx_nmr_exptl.solution_id 
1 1 '2D NOESY' 1 
2 1 DQF-COSY   1 
# 
_pdbx_nmr_details.entry_id   2IRO 
_pdbx_nmr_details.text       'natural abundance 13C-1H and 15N-1H HSQC' 
# 
_pdbx_nmr_refine.entry_id           2IRO 
_pdbx_nmr_refine.method             'simulated annealing and restrained molecular dynamics' 
_pdbx_nmr_refine.details            'structures validated by chemical back calculation using the program Nuchemics' 
_pdbx_nmr_refine.software_ordinal   1 
# 
loop_
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
_pdbx_nmr_software.ordinal 
'structure solution' CNS     1.1 'Brunger et al.'  1 
processing           NMRPipe ?   'Delaglio et al.' 2 
'data analysis'      Sparky  3   'Goddard et al.'  3 
refinement           CNS     1.1 'Brunger et al.'  4 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A OP3    O N N 1   
A P      P N N 2   
A OP1    O N N 3   
A OP2    O N N 4   
A "O5'"  O N N 5   
A "C5'"  C N N 6   
A "C4'"  C N R 7   
A "O4'"  O N N 8   
A "C3'"  C N S 9   
A "O3'"  O N N 10  
A "C2'"  C N R 11  
A "O2'"  O N N 12  
A "C1'"  C N R 13  
A N9     N Y N 14  
A C8     C Y N 15  
A N7     N Y N 16  
A C5     C Y N 17  
A C6     C Y N 18  
A N6     N N N 19  
A N1     N Y N 20  
A C2     C Y N 21  
A N3     N Y N 22  
A C4     C Y N 23  
A HOP3   H N N 24  
A HOP2   H N N 25  
A "H5'"  H N N 26  
A "H5''" H N N 27  
A "H4'"  H N N 28  
A "H3'"  H N N 29  
A "HO3'" H N N 30  
A "H2'"  H N N 31  
A "HO2'" H N N 32  
A "H1'"  H N N 33  
A H8     H N N 34  
A H61    H N N 35  
A H62    H N N 36  
A H2     H N N 37  
C OP3    O N N 38  
C P      P N N 39  
C OP1    O N N 40  
C OP2    O N N 41  
C "O5'"  O N N 42  
C "C5'"  C N N 43  
C "C4'"  C N R 44  
C "O4'"  O N N 45  
C "C3'"  C N S 46  
C "O3'"  O N N 47  
C "C2'"  C N R 48  
C "O2'"  O N N 49  
C "C1'"  C N R 50  
C N1     N N N 51  
C C2     C N N 52  
C O2     O N N 53  
C N3     N N N 54  
C C4     C N N 55  
C N4     N N N 56  
C C5     C N N 57  
C C6     C N N 58  
C HOP3   H N N 59  
C HOP2   H N N 60  
C "H5'"  H N N 61  
C "H5''" H N N 62  
C "H4'"  H N N 63  
C "H3'"  H N N 64  
C "HO3'" H N N 65  
C "H2'"  H N N 66  
C "HO2'" H N N 67  
C "H1'"  H N N 68  
C H41    H N N 69  
C H42    H N N 70  
C H5     H N N 71  
C H6     H N N 72  
G OP3    O N N 73  
G P      P N N 74  
G OP1    O N N 75  
G OP2    O N N 76  
G "O5'"  O N N 77  
G "C5'"  C N N 78  
G "C4'"  C N R 79  
G "O4'"  O N N 80  
G "C3'"  C N S 81  
G "O3'"  O N N 82  
G "C2'"  C N R 83  
G "O2'"  O N N 84  
G "C1'"  C N R 85  
G N9     N Y N 86  
G C8     C Y N 87  
G N7     N Y N 88  
G C5     C Y N 89  
G C6     C N N 90  
G O6     O N N 91  
G N1     N N N 92  
G C2     C N N 93  
G N2     N N N 94  
G N3     N N N 95  
G C4     C Y N 96  
G HOP3   H N N 97  
G HOP2   H N N 98  
G "H5'"  H N N 99  
G "H5''" H N N 100 
G "H4'"  H N N 101 
G "H3'"  H N N 102 
G "HO3'" H N N 103 
G "H2'"  H N N 104 
G "HO2'" H N N 105 
G "H1'"  H N N 106 
G H8     H N N 107 
G H1     H N N 108 
G H21    H N N 109 
G H22    H N N 110 
U OP3    O N N 111 
U P      P N N 112 
U OP1    O N N 113 
U OP2    O N N 114 
U "O5'"  O N N 115 
U "C5'"  C N N 116 
U "C4'"  C N R 117 
U "O4'"  O N N 118 
U "C3'"  C N S 119 
U "O3'"  O N N 120 
U "C2'"  C N R 121 
U "O2'"  O N N 122 
U "C1'"  C N R 123 
U N1     N N N 124 
U C2     C N N 125 
U O2     O N N 126 
U N3     N N N 127 
U C4     C N N 128 
U O4     O N N 129 
U C5     C N N 130 
U C6     C N N 131 
U HOP3   H N N 132 
U HOP2   H N N 133 
U "H5'"  H N N 134 
U "H5''" H N N 135 
U "H4'"  H N N 136 
U "H3'"  H N N 137 
U "HO3'" H N N 138 
U "H2'"  H N N 139 
U "HO2'" H N N 140 
U "H1'"  H N N 141 
U H3     H N N 142 
U H5     H N N 143 
U H6     H N N 144 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A OP3   P      sing N N 1   
A OP3   HOP3   sing N N 2   
A P     OP1    doub N N 3   
A P     OP2    sing N N 4   
A P     "O5'"  sing N N 5   
A OP2   HOP2   sing N N 6   
A "O5'" "C5'"  sing N N 7   
A "C5'" "C4'"  sing N N 8   
A "C5'" "H5'"  sing N N 9   
A "C5'" "H5''" sing N N 10  
A "C4'" "O4'"  sing N N 11  
A "C4'" "C3'"  sing N N 12  
A "C4'" "H4'"  sing N N 13  
A "O4'" "C1'"  sing N N 14  
A "C3'" "O3'"  sing N N 15  
A "C3'" "C2'"  sing N N 16  
A "C3'" "H3'"  sing N N 17  
A "O3'" "HO3'" sing N N 18  
A "C2'" "O2'"  sing N N 19  
A "C2'" "C1'"  sing N N 20  
A "C2'" "H2'"  sing N N 21  
A "O2'" "HO2'" sing N N 22  
A "C1'" N9     sing N N 23  
A "C1'" "H1'"  sing N N 24  
A N9    C8     sing Y N 25  
A N9    C4     sing Y N 26  
A C8    N7     doub Y N 27  
A C8    H8     sing N N 28  
A N7    C5     sing Y N 29  
A C5    C6     sing Y N 30  
A C5    C4     doub Y N 31  
A C6    N6     sing N N 32  
A C6    N1     doub Y N 33  
A N6    H61    sing N N 34  
A N6    H62    sing N N 35  
A N1    C2     sing Y N 36  
A C2    N3     doub Y N 37  
A C2    H2     sing N N 38  
A N3    C4     sing Y N 39  
C OP3   P      sing N N 40  
C OP3   HOP3   sing N N 41  
C P     OP1    doub N N 42  
C P     OP2    sing N N 43  
C P     "O5'"  sing N N 44  
C OP2   HOP2   sing N N 45  
C "O5'" "C5'"  sing N N 46  
C "C5'" "C4'"  sing N N 47  
C "C5'" "H5'"  sing N N 48  
C "C5'" "H5''" sing N N 49  
C "C4'" "O4'"  sing N N 50  
C "C4'" "C3'"  sing N N 51  
C "C4'" "H4'"  sing N N 52  
C "O4'" "C1'"  sing N N 53  
C "C3'" "O3'"  sing N N 54  
C "C3'" "C2'"  sing N N 55  
C "C3'" "H3'"  sing N N 56  
C "O3'" "HO3'" sing N N 57  
C "C2'" "O2'"  sing N N 58  
C "C2'" "C1'"  sing N N 59  
C "C2'" "H2'"  sing N N 60  
C "O2'" "HO2'" sing N N 61  
C "C1'" N1     sing N N 62  
C "C1'" "H1'"  sing N N 63  
C N1    C2     sing N N 64  
C N1    C6     sing N N 65  
C C2    O2     doub N N 66  
C C2    N3     sing N N 67  
C N3    C4     doub N N 68  
C C4    N4     sing N N 69  
C C4    C5     sing N N 70  
C N4    H41    sing N N 71  
C N4    H42    sing N N 72  
C C5    C6     doub N N 73  
C C5    H5     sing N N 74  
C C6    H6     sing N N 75  
G OP3   P      sing N N 76  
G OP3   HOP3   sing N N 77  
G P     OP1    doub N N 78  
G P     OP2    sing N N 79  
G P     "O5'"  sing N N 80  
G OP2   HOP2   sing N N 81  
G "O5'" "C5'"  sing N N 82  
G "C5'" "C4'"  sing N N 83  
G "C5'" "H5'"  sing N N 84  
G "C5'" "H5''" sing N N 85  
G "C4'" "O4'"  sing N N 86  
G "C4'" "C3'"  sing N N 87  
G "C4'" "H4'"  sing N N 88  
G "O4'" "C1'"  sing N N 89  
G "C3'" "O3'"  sing N N 90  
G "C3'" "C2'"  sing N N 91  
G "C3'" "H3'"  sing N N 92  
G "O3'" "HO3'" sing N N 93  
G "C2'" "O2'"  sing N N 94  
G "C2'" "C1'"  sing N N 95  
G "C2'" "H2'"  sing N N 96  
G "O2'" "HO2'" sing N N 97  
G "C1'" N9     sing N N 98  
G "C1'" "H1'"  sing N N 99  
G N9    C8     sing Y N 100 
G N9    C4     sing Y N 101 
G C8    N7     doub Y N 102 
G C8    H8     sing N N 103 
G N7    C5     sing Y N 104 
G C5    C6     sing N N 105 
G C5    C4     doub Y N 106 
G C6    O6     doub N N 107 
G C6    N1     sing N N 108 
G N1    C2     sing N N 109 
G N1    H1     sing N N 110 
G C2    N2     sing N N 111 
G C2    N3     doub N N 112 
G N2    H21    sing N N 113 
G N2    H22    sing N N 114 
G N3    C4     sing N N 115 
U OP3   P      sing N N 116 
U OP3   HOP3   sing N N 117 
U P     OP1    doub N N 118 
U P     OP2    sing N N 119 
U P     "O5'"  sing N N 120 
U OP2   HOP2   sing N N 121 
U "O5'" "C5'"  sing N N 122 
U "C5'" "C4'"  sing N N 123 
U "C5'" "H5'"  sing N N 124 
U "C5'" "H5''" sing N N 125 
U "C4'" "O4'"  sing N N 126 
U "C4'" "C3'"  sing N N 127 
U "C4'" "H4'"  sing N N 128 
U "O4'" "C1'"  sing N N 129 
U "C3'" "O3'"  sing N N 130 
U "C3'" "C2'"  sing N N 131 
U "C3'" "H3'"  sing N N 132 
U "O3'" "HO3'" sing N N 133 
U "C2'" "O2'"  sing N N 134 
U "C2'" "C1'"  sing N N 135 
U "C2'" "H2'"  sing N N 136 
U "O2'" "HO2'" sing N N 137 
U "C1'" N1     sing N N 138 
U "C1'" "H1'"  sing N N 139 
U N1    C2     sing N N 140 
U N1    C6     sing N N 141 
U C2    O2     doub N N 142 
U C2    N3     sing N N 143 
U N3    C4     sing N N 144 
U N3    H3     sing N N 145 
U C4    O4     doub N N 146 
U C4    C5     sing N N 147 
U C5    C6     doub N N 148 
U C5    H5     sing N N 149 
U C6    H6     sing N N 150 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2IRO 'double helix'         
2IRO 'a-form double helix'  
2IRO 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1 1_555 B C 8 1_555 -0.163 -0.565 -1.528 -17.319 0.825  -4.909 1 A_G1:C17_B A 1 ? B 17 ? 19 1  
1 A C 2 1_555 B G 7 1_555 0.872  -0.483 -0.710 -10.183 -3.616 4.500  2 A_C2:G16_B A 2 ? B 16 ? 19 1  
1 A G 3 1_555 B U 6 1_555 7.047  -3.332 -0.255 -4.266  8.419  9.632  3 A_G3:U15_B A 3 ? B 15 ? ?  ?  
1 A G 4 1_555 B A 5 1_555 6.581  -4.652 -0.104 22.388  4.448  -2.399 4 A_G4:A14_B A 4 ? B 14 ? 11 10 
1 A A 5 1_555 B G 4 1_555 -6.597 -4.604 0.042  -22.142 3.490  -1.224 5 A_A5:G13_B A 5 ? B 13 ? 11 10 
1 A U 6 1_555 B G 3 1_555 -7.010 -3.339 -0.302 4.261   7.960  10.441 6 A_U6:G12_B A 6 ? B 12 ? ?  ?  
1 A G 7 1_555 B C 2 1_555 -0.948 -0.508 -0.637 10.477  -4.058 4.334  7 A_G7:C11_B A 7 ? B 11 ? 19 1  
1 A C 8 1_555 B G 1 1_555 0.148  -0.553 -1.495 16.054  -0.687 -3.842 8 A_C8:G10_B A 8 ? B 10 ? 19 1  
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1 1_555 B C 8 1_555 A C 2 1_555 B G 7 1_555 0.565  -1.524 3.336 -5.127 -1.548 31.520 -2.482  -1.971 3.275 -2.825  9.353   
31.960 1 AA_G1C2:G16C17_BB A 1 ? B 17 ? A 2 ? B 16 ? 
1 A C 2 1_555 B G 7 1_555 A G 3 1_555 B U 6 1_555 -0.561 -0.081 3.221 4.308  15.481 59.733 -0.789  0.745  3.076 15.247  -4.243  
61.664 2 AA_C2G3:U15G16_BB A 2 ? B 16 ? A 3 ? B 15 ? 
1 A G 3 1_555 B U 6 1_555 A G 4 1_555 B A 5 1_555 -0.604 -0.626 3.251 6.577  0.389  20.266 -1.847  4.238  2.899 1.070   -18.085 
21.299 3 AA_G3G4:A14U15_BB A 3 ? B 15 ? A 4 ? B 14 ? 
1 A G 4 1_555 B A 5 1_555 A A 5 1_555 B G 4 1_555 0.024  -1.738 3.796 -0.184 7.688  -3.228 -19.428 -0.583 3.072 -67.247 -1.608  
-8.339 4 AA_G4A5:G13A14_BB A 4 ? B 14 ? A 5 ? B 13 ? 
1 A A 5 1_555 B G 4 1_555 A U 6 1_555 B G 3 1_555 0.859  -0.459 3.182 -5.929 1.612  20.938 -1.801  -4.436 2.792 4.318   15.879  
21.811 5 AA_A5U6:G12G13_BB A 5 ? B 13 ? A 6 ? B 12 ? 
1 A U 6 1_555 B G 3 1_555 A G 7 1_555 B C 2 1_555 0.485  -0.066 3.176 -4.997 14.336 59.847 -0.715  -0.701 3.045 14.124  4.924   
61.569 6 AA_U6G7:C11G12_BB A 6 ? B 12 ? A 7 ? B 11 ? 
1 A G 7 1_555 B C 2 1_555 A C 8 1_555 B G 1 1_555 -0.530 -1.579 3.366 5.262  -1.613 32.068 -2.529  1.892  3.313 -2.893  -9.438  
32.524 7 AA_G7C8:G10C11_BB A 7 ? B 11 ? A 8 ? B 10 ? 
# 
_pdbx_nmr_spectrometer.spectrometer_id   1 
_pdbx_nmr_spectrometer.model             INOVA 
_pdbx_nmr_spectrometer.manufacturer      Varian 
_pdbx_nmr_spectrometer.field_strength    600 
_pdbx_nmr_spectrometer.type              ? 
# 
_atom_sites.entry_id                    2IRO 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_