HEADER LYASE 16-OCT-06 2IRP TITLE CRYSTAL STRUCTURE OF THE L-FUCULOSE-1-PHOSPHATE ALDOLASE (AQ_1979) TITLE 2 FROM AQUIFEX AEOLICUS VF5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALDOLASE CLASS 2 PROTEIN AQ_1979; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-FUCULOSE-1-PHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21 CONDON PLUS (DE3)-RIL-X; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALDOLASE, ALDEHYDE, ENZYMATIC MECHANISM, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.JEYAKANTHAN,D.GAYATHRI,M.YOGAVEL,D.VELMURUGAN,S.BABA,A.EBIHARA, AUTHOR 2 S.KURAMITSU,A.SHINKAI,Y.SHIRO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-JUL-11 2IRP 1 VERSN REVDAT 3 24-FEB-09 2IRP 1 VERSN REVDAT 2 11-DEC-07 2IRP 1 REMARK REVDAT 1 30-OCT-07 2IRP 0 JRNL AUTH J.JEYAKANTHAN,D.GAYATHRI,M.YOGAVEL,D.VELMURUGAN,S.BABA, JRNL AUTH 2 A.EBIHARA,S.KURAMITSU,A.SHINKAI,Y.SHIRO,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE L-FUCULOSE-1-PHOSPHATE ALDOLASE JRNL TITL 2 (AQ_1979) FROM AQUIFEX AEOLICUS VF5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 352366.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 22865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3450 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 168 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.660 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.040; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 113.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : BME.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : BME.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB039933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788, 0.9793, 0.9000 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : RH COATED BENT-CYRINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.64200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 55% PEG 200, PH 7.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.02250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.02250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 51.25000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.02250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 51.25000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 51.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.02250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 102.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 102.50000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 102.50000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 102.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 102.50000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 102.50000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 -51.25000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 51.25000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -58.02250 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 153.75000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 51.25000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -58.02250 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 51.25000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 -51.25000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -58.02250 REMARK 350 BIOMT1 8 0.000000 1.000000 0.000000 51.25000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 153.75000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -58.02250 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 205.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 102.50000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -102.50000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 102.50000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 102.50000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1356 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1306 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1315 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 208 REMARK 465 MSE B 1 REMARK 465 HIS B 207 REMARK 465 SER B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 206 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 206 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 -155.29 74.77 REMARK 500 ALA A 31 55.79 33.15 REMARK 500 THR A 32 -15.34 87.20 REMARK 500 LYS A 56 38.00 -143.28 REMARK 500 TYR A 67 3.77 -64.78 REMARK 500 LEU A 119 -47.87 -144.03 REMARK 500 GLU A 120 100.05 74.19 REMARK 500 LYS A 166 53.08 -140.14 REMARK 500 LEU A 204 30.91 -71.45 REMARK 500 PHE A 206 67.88 -160.08 REMARK 500 VAL B 3 -174.12 40.26 REMARK 500 ALA B 31 53.42 37.34 REMARK 500 THR B 32 -1.96 77.00 REMARK 500 LYS B 56 29.46 -140.20 REMARK 500 SER B 109 0.33 -62.58 REMARK 500 ASP B 115 45.91 -106.21 REMARK 500 PHE B 116 149.16 -175.99 REMARK 500 ASP B 121 83.70 -159.32 REMARK 500 PHE B 128 76.42 -116.02 REMARK 500 PRO B 129 -71.26 -57.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1256 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A1257 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1300 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1302 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1328 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1331 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1334 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1335 DISTANCE = 11.21 ANGSTROMS REMARK 525 HOH A1336 DISTANCE = 13.97 ANGSTROMS REMARK 525 HOH A1356 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1357 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH A1360 DISTANCE = 7.85 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 9.41 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A1378 DISTANCE = 8.79 ANGSTROMS REMARK 525 HOH B1234 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH B1245 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH B1259 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1273 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH B1278 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B1291 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH B1303 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B1318 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH B1323 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B1324 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1325 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B1333 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH B1334 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH B1337 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1338 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1339 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH B1346 DISTANCE = 12.65 ANGSTROMS REMARK 525 HOH B1347 DISTANCE = 13.14 ANGSTROMS REMARK 525 HOH B1365 DISTANCE = 8.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AAE001001979.1 RELATED DB: TARGETDB DBREF 2IRP A 1 208 UNP O67788 Y1979_AQUAE 1 208 DBREF 2IRP B 1 208 UNP O67788 Y1979_AQUAE 1 208 SEQRES 1 A 208 MSE ASN VAL GLU LEU PHE LYS LYS PHE SER GLU LYS VAL SEQRES 2 A 208 GLU GLU ILE ILE GLU ALA GLY ARG ILE LEU HIS SER ARG SEQRES 3 A 208 GLY TRP VAL PRO ALA THR SER GLY ASN ILE SER ALA LYS SEQRES 4 A 208 VAL SER GLU GLU TYR ILE ALA ILE THR ALA SER GLY LYS SEQRES 5 A 208 HIS LYS GLY LYS LEU THR PRO GLU ASP ILE LEU LEU ILE SEQRES 6 A 208 ASP TYR GLU GLY ARG PRO VAL GLY GLY GLY LYS PRO SER SEQRES 7 A 208 ALA GLU THR LEU LEU HIS THR THR VAL TYR LYS LEU PHE SEQRES 8 A 208 PRO GLU VAL ASN ALA VAL VAL HIS THR HIS SER PRO ASN SEQRES 9 A 208 ALA THR VAL ILE SER ILE VAL GLU LYS LYS ASP PHE VAL SEQRES 10 A 208 GLU LEU GLU ASP TYR GLU LEU LEU LYS ALA PHE PRO ASP SEQRES 11 A 208 ILE HIS THR HIS GLU VAL LYS ILE LYS ILE PRO ILE PHE SEQRES 12 A 208 PRO ASN GLU GLN ASN ILE PRO LEU LEU ALA LYS GLU VAL SEQRES 13 A 208 GLU ASN TYR PHE LYS THR SER GLU ASP LYS TYR GLY PHE SEQRES 14 A 208 LEU ILE ARG GLY HIS GLY LEU TYR THR TRP GLY ARG SER SEQRES 15 A 208 MSE GLU GLU ALA LEU ILE HIS THR GLU ALA LEU GLU PHE SEQRES 16 A 208 ILE PHE GLU CYS GLU LEU LYS LEU LEU SER PHE HIS SER SEQRES 1 B 208 MSE ASN VAL GLU LEU PHE LYS LYS PHE SER GLU LYS VAL SEQRES 2 B 208 GLU GLU ILE ILE GLU ALA GLY ARG ILE LEU HIS SER ARG SEQRES 3 B 208 GLY TRP VAL PRO ALA THR SER GLY ASN ILE SER ALA LYS SEQRES 4 B 208 VAL SER GLU GLU TYR ILE ALA ILE THR ALA SER GLY LYS SEQRES 5 B 208 HIS LYS GLY LYS LEU THR PRO GLU ASP ILE LEU LEU ILE SEQRES 6 B 208 ASP TYR GLU GLY ARG PRO VAL GLY GLY GLY LYS PRO SER SEQRES 7 B 208 ALA GLU THR LEU LEU HIS THR THR VAL TYR LYS LEU PHE SEQRES 8 B 208 PRO GLU VAL ASN ALA VAL VAL HIS THR HIS SER PRO ASN SEQRES 9 B 208 ALA THR VAL ILE SER ILE VAL GLU LYS LYS ASP PHE VAL SEQRES 10 B 208 GLU LEU GLU ASP TYR GLU LEU LEU LYS ALA PHE PRO ASP SEQRES 11 B 208 ILE HIS THR HIS GLU VAL LYS ILE LYS ILE PRO ILE PHE SEQRES 12 B 208 PRO ASN GLU GLN ASN ILE PRO LEU LEU ALA LYS GLU VAL SEQRES 13 B 208 GLU ASN TYR PHE LYS THR SER GLU ASP LYS TYR GLY PHE SEQRES 14 B 208 LEU ILE ARG GLY HIS GLY LEU TYR THR TRP GLY ARG SER SEQRES 15 B 208 MSE GLU GLU ALA LEU ILE HIS THR GLU ALA LEU GLU PHE SEQRES 16 B 208 ILE PHE GLU CYS GLU LEU LYS LEU LEU SER PHE HIS SER MODRES 2IRP MSE A 183 MET SELENOMETHIONINE MODRES 2IRP MSE B 183 MET SELENOMETHIONINE HET MSE A 183 8 HET MSE B 183 8 HET CL A1201 1 HET CL B1202 1 HET BME B1101 4 HET BME A1102 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 BME 2(C2 H6 O S) FORMUL 7 HOH *340(H2 O) HELIX 1 1 GLU A 4 ARG A 26 1 23 HELIX 2 2 VAL A 29 SER A 33 5 5 HELIX 3 3 HIS A 53 LEU A 57 5 5 HELIX 4 4 THR A 58 GLU A 60 5 3 HELIX 5 5 SER A 78 PHE A 91 1 14 HELIX 6 6 SER A 102 GLU A 112 1 11 HELIX 7 7 ASP A 121 LYS A 126 1 6 HELIX 8 8 ASN A 148 SER A 163 1 16 HELIX 9 9 SER A 182 LEU A 204 1 23 HELIX 10 10 GLU B 4 ARG B 26 1 23 HELIX 11 11 VAL B 29 SER B 33 5 5 HELIX 12 12 HIS B 53 LEU B 57 5 5 HELIX 13 13 THR B 58 GLU B 60 5 3 HELIX 14 14 SER B 78 PHE B 91 1 14 HELIX 15 15 SER B 102 GLU B 112 1 11 HELIX 16 16 ASP B 121 LYS B 126 1 6 HELIX 17 17 ASN B 148 LYS B 161 1 14 HELIX 18 18 SER B 182 LEU B 203 1 22 SHEET 1 A 8 ILE A 62 ASP A 66 0 SHEET 2 A 8 TYR A 44 THR A 48 -1 N ILE A 47 O LEU A 63 SHEET 3 A 8 ASN A 35 LYS A 39 -1 N ALA A 38 O ALA A 46 SHEET 4 A 8 ALA A 96 THR A 100 -1 O HIS A 99 N ASN A 35 SHEET 5 A 8 GLY A 175 GLY A 180 -1 O THR A 178 N VAL A 98 SHEET 6 A 8 PHE A 169 ILE A 171 -1 N PHE A 169 O TYR A 177 SHEET 7 A 8 LYS A 139 PHE A 143 1 N PHE A 143 O LEU A 170 SHEET 8 A 8 PHE A 116 GLU A 118 -1 N VAL A 117 O ILE A 140 SHEET 1 B 8 ILE B 62 ILE B 65 0 SHEET 2 B 8 TYR B 44 THR B 48 -1 N ILE B 47 O LEU B 63 SHEET 3 B 8 ASN B 35 SER B 41 -1 N ALA B 38 O ALA B 46 SHEET 4 B 8 ALA B 96 THR B 100 -1 O HIS B 99 N ASN B 35 SHEET 5 B 8 GLY B 175 GLY B 180 -1 O THR B 178 N VAL B 98 SHEET 6 B 8 PHE B 169 ILE B 171 -1 N PHE B 169 O TYR B 177 SHEET 7 B 8 ILE B 138 PHE B 143 1 N PHE B 143 O LEU B 170 SHEET 8 B 8 PHE B 116 LEU B 119 -1 N VAL B 117 O ILE B 140 LINK C SER A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N GLU A 184 1555 1555 1.32 LINK C SER B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N GLU B 184 1555 1555 1.33 SITE 1 AC1 1 LYS A 202 SITE 1 AC2 1 LYS B 202 SITE 1 AC3 3 THR B 48 SER B 50 LEU B 63 SITE 1 AC4 3 ARG A 26 HOH A1286 HOH A1373 CRYST1 102.500 102.500 116.045 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008617 0.00000