HEADER TRANSFERASE 16-OCT-06 2IRU TITLE CRYSTAL STRUCTURE OF THE POLYMERASE DOMAIN FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS LIGASE D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA LIGASE-LIKE PROTEIN RV0938/MT0965; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGD POLYMERASE DOMAIN (RESIDUES 1-300); COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV098; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS POLYMERASE, PRIMASE, LIGASE, NHEJ, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.C.BRISSETT,R.S.PITCHER,A.J.DOHERTY REVDAT 5 21-FEB-24 2IRU 1 SEQADV REVDAT 4 13-JUL-11 2IRU 1 VERSN REVDAT 3 24-FEB-09 2IRU 1 VERSN REVDAT 2 30-OCT-07 2IRU 1 JRNL REVDAT 1 02-JAN-07 2IRU 0 JRNL AUTH R.S.PITCHER,N.C.BRISSETT,A.J.PICHER,P.ANDRADE,R.JUAREZ, JRNL AUTH 2 D.THOMPSON,G.C.FOX,L.BLANCO,A.J.DOHERTY JRNL TITL STRUCTURE AND FUNCTION OF A MYCOBACTERIAL NHEJ DNA REPAIR JRNL TITL 2 POLYMERASE. JRNL REF J.MOL.BIOL. V. 366 391 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17174332 JRNL DOI 10.1016/J.JMB.2006.10.046 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 60313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3268 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 663 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4444 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6069 ; 1.478 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;30.814 ;22.597 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 698 ;13.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3380 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2267 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3055 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 479 ; 0.260 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2907 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4579 ; 1.430 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 2.269 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1490 ; 3.382 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9560 43.6160 21.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0267 REMARK 3 T33: 0.0359 T12: -0.0048 REMARK 3 T13: -0.0022 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.7723 L22: 0.9954 REMARK 3 L33: 1.3342 L12: 0.0915 REMARK 3 L13: 0.1683 L23: 0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0165 S13: -0.0467 REMARK 3 S21: -0.1016 S22: -0.0107 S23: 0.0177 REMARK 3 S31: 0.0220 S32: -0.0859 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9670 22.0650 32.9130 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: -0.0189 REMARK 3 T33: 0.0374 T12: -0.0205 REMARK 3 T13: -0.0230 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.3809 L22: 1.4390 REMARK 3 L33: 2.3692 L12: 0.3404 REMARK 3 L13: 0.0722 L23: -1.4353 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.0488 S13: -0.1058 REMARK 3 S21: -0.1330 S22: -0.0107 S23: -0.0710 REMARK 3 S31: 0.4484 S32: -0.0866 S33: -0.0344 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3180 29.6690 39.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0387 REMARK 3 T33: 0.0059 T12: -0.0425 REMARK 3 T13: -0.0233 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.1869 L22: 1.3638 REMARK 3 L33: 1.0002 L12: -0.0450 REMARK 3 L13: -0.0830 L23: -1.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.1082 S13: -0.0098 REMARK 3 S21: 0.1396 S22: 0.0869 S23: 0.0904 REMARK 3 S31: 0.1171 S32: -0.2243 S33: -0.1087 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8030 34.2470 37.1140 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0015 REMARK 3 T33: 0.0108 T12: 0.0145 REMARK 3 T13: -0.0532 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.2355 L22: 2.9856 REMARK 3 L33: 1.2636 L12: 1.0968 REMARK 3 L13: 0.6539 L23: -0.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: -0.3510 S13: -0.2024 REMARK 3 S21: 0.2722 S22: -0.0844 S23: -0.3848 REMARK 3 S31: 0.1560 S32: 0.1365 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3600 59.6000 25.1050 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0314 REMARK 3 T33: 0.0311 T12: -0.0231 REMARK 3 T13: -0.0074 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.6343 L22: 1.1062 REMARK 3 L33: 1.3674 L12: -0.0205 REMARK 3 L13: -0.0430 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0683 S13: 0.0281 REMARK 3 S21: 0.1008 S22: -0.0560 S23: 0.0815 REMARK 3 S31: -0.0440 S32: -0.0307 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1900 78.9110 17.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0243 REMARK 3 T33: 0.0700 T12: -0.0359 REMARK 3 T13: -0.0104 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5307 L22: 2.1878 REMARK 3 L33: 4.3759 L12: -0.1315 REMARK 3 L13: -0.1748 L23: -1.8199 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.0450 S13: 0.0378 REMARK 3 S21: 0.1115 S22: -0.0625 S23: 0.0138 REMARK 3 S31: -0.2475 S32: 0.1492 S33: -0.0084 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 163 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2290 81.1390 15.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.0088 REMARK 3 T33: 0.0102 T12: -0.0957 REMARK 3 T13: -0.0032 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.5418 L22: 8.1237 REMARK 3 L33: 1.6953 L12: -1.1504 REMARK 3 L13: -0.2552 L23: 1.2260 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0574 S13: 0.1298 REMARK 3 S21: 0.1693 S22: -0.0798 S23: -0.0695 REMARK 3 S31: -0.3700 S32: 0.0929 S33: 0.0487 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 191 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0090 85.4810 8.0680 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.0002 REMARK 3 T33: 0.0159 T12: 0.0166 REMARK 3 T13: 0.0180 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 0.9026 L22: 1.7663 REMARK 3 L33: 14.6893 L12: -0.2002 REMARK 3 L13: -0.0057 L23: -2.8035 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.1191 S13: 0.0743 REMARK 3 S21: 0.1811 S22: 0.1854 S23: 0.1968 REMARK 3 S31: 0.0138 S32: -0.6701 S33: -0.2164 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 224 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7180 70.3430 12.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.0296 REMARK 3 T33: 0.0040 T12: -0.0425 REMARK 3 T13: 0.0029 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8095 L22: 1.4151 REMARK 3 L33: 1.4580 L12: -0.6366 REMARK 3 L13: 0.1336 L23: -0.3322 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.1232 S13: 0.0829 REMARK 3 S21: -0.1138 S22: -0.0853 S23: -0.1147 REMARK 3 S31: -0.1779 S32: 0.1724 S33: 0.0372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63571 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.02900 REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : 0.12900 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M MG ACETATE, PH REMARK 280 7.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.89800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ALA A 294 REMARK 465 PRO A 295 REMARK 465 VAL A 296 REMARK 465 ALA A 297 REMARK 465 ASP A 298 REMARK 465 ARG A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 ARG A 302 REMARK 465 TYR A 303 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 ALA B 292 REMARK 465 ASP B 293 REMARK 465 ALA B 294 REMARK 465 PRO B 295 REMARK 465 VAL B 296 REMARK 465 ALA B 297 REMARK 465 ASP B 298 REMARK 465 ARG B 299 REMARK 465 LEU B 300 REMARK 465 THR B 301 REMARK 465 ARG B 302 REMARK 465 TYR B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS B 55 O HOH B 496 1.94 REMARK 500 NH1 ARG A 11 O HOH A 525 2.10 REMARK 500 O PRO B 189 O HOH B 601 2.13 REMARK 500 O HOH B 513 O HOH B 555 2.14 REMARK 500 CD ARG B 160 O HOH B 495 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 487 O HOH B 359 1655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 54 CG - CD - NE ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG B 54 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 15.77 -144.02 REMARK 500 SER A 177 -94.62 -107.24 REMARK 500 LYS A 178 -33.70 -133.66 REMARK 500 THR A 219 107.42 -23.67 REMARK 500 TYR A 244 -7.01 74.20 REMARK 500 SER B 88 -72.58 -71.31 REMARK 500 ASP B 97 17.79 -146.08 REMARK 500 SER B 177 -105.92 -106.34 REMARK 500 THR B 219 133.53 -39.20 REMARK 500 TYR B 244 -5.64 75.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IRX RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GTP. REMARK 900 RELATED ID: 2IRY RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DGTP. DBREF 2IRU A 4 303 UNP P71571 Y938_MYCTU 1 300 DBREF 2IRU B 4 303 UNP P71571 Y938_MYCTU 1 300 SEQADV 2IRU GLY A 1 UNP P71571 EXPRESSION TAG SEQADV 2IRU SER A 2 UNP P71571 EXPRESSION TAG SEQADV 2IRU HIS A 3 UNP P71571 EXPRESSION TAG SEQADV 2IRU GLY B 1 UNP P71571 EXPRESSION TAG SEQADV 2IRU SER B 2 UNP P71571 EXPRESSION TAG SEQADV 2IRU HIS B 3 UNP P71571 EXPRESSION TAG SEQRES 1 A 303 GLY SER HIS MET GLY SER ALA SER GLU GLN ARG VAL THR SEQRES 2 A 303 LEU THR ASN ALA ASP LYS VAL LEU TYR PRO ALA THR GLY SEQRES 3 A 303 THR THR LYS SER ASP ILE PHE ASP TYR TYR ALA GLY VAL SEQRES 4 A 303 ALA GLU VAL MET LEU GLY HIS ILE ALA GLY ARG PRO ALA SEQRES 5 A 303 THR ARG LYS ARG TRP PRO ASN GLY VAL ASP GLN PRO ALA SEQRES 6 A 303 PHE PHE GLU LYS GLN LEU ALA LEU SER ALA PRO PRO TRP SEQRES 7 A 303 LEU SER ARG ALA THR VAL ALA HIS ARG SER GLY THR THR SEQRES 8 A 303 THR TYR PRO ILE ILE ASP SER ALA THR GLY LEU ALA TRP SEQRES 9 A 303 ILE ALA GLN GLN ALA ALA LEU GLU VAL HIS VAL PRO GLN SEQRES 10 A 303 TRP ARG PHE VAL ALA GLU PRO GLY SER GLY GLU LEU ASN SEQRES 11 A 303 PRO GLY PRO ALA THR ARG LEU VAL PHE ASP LEU ASP PRO SEQRES 12 A 303 GLY GLU GLY VAL MET MET ALA GLN LEU ALA GLU VAL ALA SEQRES 13 A 303 ARG ALA VAL ARG ASP LEU LEU ALA ASP ILE GLY LEU VAL SEQRES 14 A 303 THR PHE PRO VAL THR SER GLY SER LYS GLY LEU HIS LEU SEQRES 15 A 303 TYR THR PRO LEU ASP GLU PRO VAL SER SER ARG GLY ALA SEQRES 16 A 303 THR VAL LEU ALA LYS ARG VAL ALA GLN ARG LEU GLU GLN SEQRES 17 A 303 ALA MET PRO ALA LEU VAL THR SER THR MET THR LYS SER SEQRES 18 A 303 LEU ARG ALA GLY LYS VAL PHE VAL ASP TRP SER GLN ASN SEQRES 19 A 303 SER GLY SER LYS THR THR ILE ALA PRO TYR SER LEU ARG SEQRES 20 A 303 GLY ARG THR HIS PRO THR VAL ALA ALA PRO ARG THR TRP SEQRES 21 A 303 ALA GLU LEU ASP ASP PRO ALA LEU ARG GLN LEU SER TYR SEQRES 22 A 303 ASP GLU VAL LEU THR ARG ILE ALA ARG ASP GLY ASP LEU SEQRES 23 A 303 LEU GLU ARG LEU ASP ALA ASP ALA PRO VAL ALA ASP ARG SEQRES 24 A 303 LEU THR ARG TYR SEQRES 1 B 303 GLY SER HIS MET GLY SER ALA SER GLU GLN ARG VAL THR SEQRES 2 B 303 LEU THR ASN ALA ASP LYS VAL LEU TYR PRO ALA THR GLY SEQRES 3 B 303 THR THR LYS SER ASP ILE PHE ASP TYR TYR ALA GLY VAL SEQRES 4 B 303 ALA GLU VAL MET LEU GLY HIS ILE ALA GLY ARG PRO ALA SEQRES 5 B 303 THR ARG LYS ARG TRP PRO ASN GLY VAL ASP GLN PRO ALA SEQRES 6 B 303 PHE PHE GLU LYS GLN LEU ALA LEU SER ALA PRO PRO TRP SEQRES 7 B 303 LEU SER ARG ALA THR VAL ALA HIS ARG SER GLY THR THR SEQRES 8 B 303 THR TYR PRO ILE ILE ASP SER ALA THR GLY LEU ALA TRP SEQRES 9 B 303 ILE ALA GLN GLN ALA ALA LEU GLU VAL HIS VAL PRO GLN SEQRES 10 B 303 TRP ARG PHE VAL ALA GLU PRO GLY SER GLY GLU LEU ASN SEQRES 11 B 303 PRO GLY PRO ALA THR ARG LEU VAL PHE ASP LEU ASP PRO SEQRES 12 B 303 GLY GLU GLY VAL MET MET ALA GLN LEU ALA GLU VAL ALA SEQRES 13 B 303 ARG ALA VAL ARG ASP LEU LEU ALA ASP ILE GLY LEU VAL SEQRES 14 B 303 THR PHE PRO VAL THR SER GLY SER LYS GLY LEU HIS LEU SEQRES 15 B 303 TYR THR PRO LEU ASP GLU PRO VAL SER SER ARG GLY ALA SEQRES 16 B 303 THR VAL LEU ALA LYS ARG VAL ALA GLN ARG LEU GLU GLN SEQRES 17 B 303 ALA MET PRO ALA LEU VAL THR SER THR MET THR LYS SER SEQRES 18 B 303 LEU ARG ALA GLY LYS VAL PHE VAL ASP TRP SER GLN ASN SEQRES 19 B 303 SER GLY SER LYS THR THR ILE ALA PRO TYR SER LEU ARG SEQRES 20 B 303 GLY ARG THR HIS PRO THR VAL ALA ALA PRO ARG THR TRP SEQRES 21 B 303 ALA GLU LEU ASP ASP PRO ALA LEU ARG GLN LEU SER TYR SEQRES 22 B 303 ASP GLU VAL LEU THR ARG ILE ALA ARG ASP GLY ASP LEU SEQRES 23 B 303 LEU GLU ARG LEU ASP ALA ASP ALA PRO VAL ALA ASP ARG SEQRES 24 B 303 LEU THR ARG TYR FORMUL 3 HOH *663(H2 O) HELIX 1 1 THR A 28 ALA A 48 1 21 HELIX 2 2 SER A 98 GLN A 108 1 11 HELIX 3 3 MET A 148 ASP A 165 1 18 HELIX 4 4 SER A 191 MET A 210 1 20 HELIX 5 5 THR A 219 ARG A 223 5 5 HELIX 6 6 TRP A 231 SER A 235 5 5 HELIX 7 7 THR A 259 ASP A 264 1 6 HELIX 8 8 TYR A 273 GLY A 284 1 12 HELIX 9 9 THR B 28 ALA B 48 1 21 HELIX 10 10 SER B 98 GLN B 108 1 11 HELIX 11 11 MET B 148 ILE B 166 1 19 HELIX 12 12 SER B 191 MET B 210 1 20 HELIX 13 13 TRP B 231 SER B 235 5 5 HELIX 14 14 THR B 259 ASP B 265 1 7 HELIX 15 15 SER B 272 GLY B 284 1 13 SHEET 1 A 4 PHE A 66 GLU A 68 0 SHEET 2 A 4 THR A 53 ARG A 56 -1 N ARG A 56 O PHE A 66 SHEET 3 A 4 GLU A 112 VAL A 115 -1 O HIS A 114 N THR A 53 SHEET 4 A 4 THR A 240 ILE A 241 -1 O THR A 240 N VAL A 115 SHEET 1 B 2 SER A 80 VAL A 84 0 SHEET 2 B 2 THR A 91 ILE A 95 -1 O THR A 91 N VAL A 84 SHEET 1 C 4 TRP A 118 ALA A 122 0 SHEET 2 C 4 LEU A 129 PRO A 143 -1 O ASN A 130 N VAL A 121 SHEET 3 C 4 VAL A 227 ASP A 230 -1 O ASP A 230 N ASP A 140 SHEET 4 C 4 VAL A 214 THR A 215 1 N THR A 215 O VAL A 229 SHEET 1 D 5 TRP A 118 ALA A 122 0 SHEET 2 D 5 LEU A 129 PRO A 143 -1 O ASN A 130 N VAL A 121 SHEET 3 D 5 LEU A 180 VAL A 190 -1 O LEU A 180 N LEU A 141 SHEET 4 D 5 PHE A 171 THR A 174 -1 N VAL A 173 O HIS A 181 SHEET 5 D 5 ALA A 256 PRO A 257 -1 O ALA A 256 N THR A 174 SHEET 1 E 2 THR A 253 VAL A 254 0 SHEET 2 E 2 LEU A 271 SER A 272 -1 O LEU A 271 N VAL A 254 SHEET 1 F 4 PHE B 66 GLU B 68 0 SHEET 2 F 4 THR B 53 ARG B 56 -1 N ARG B 54 O GLU B 68 SHEET 3 F 4 GLU B 112 VAL B 115 -1 O HIS B 114 N THR B 53 SHEET 4 F 4 THR B 240 ILE B 241 -1 O THR B 240 N VAL B 115 SHEET 1 G 2 SER B 80 ALA B 85 0 SHEET 2 G 2 THR B 90 ILE B 95 -1 O THR B 91 N VAL B 84 SHEET 1 H 4 TRP B 118 ALA B 122 0 SHEET 2 H 4 LEU B 129 PRO B 143 -1 O ASN B 130 N VAL B 121 SHEET 3 H 4 VAL B 227 ASP B 230 -1 O PHE B 228 N ASP B 142 SHEET 4 H 4 VAL B 214 THR B 215 1 N THR B 215 O VAL B 229 SHEET 1 I 5 TRP B 118 ALA B 122 0 SHEET 2 I 5 LEU B 129 PRO B 143 -1 O ASN B 130 N VAL B 121 SHEET 3 I 5 LEU B 180 VAL B 190 -1 O LEU B 180 N LEU B 141 SHEET 4 I 5 PHE B 171 THR B 174 -1 N VAL B 173 O HIS B 181 SHEET 5 I 5 ALA B 256 PRO B 257 -1 O ALA B 256 N THR B 174 CRYST1 41.053 75.796 96.100 90.00 92.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024359 0.000000 0.001142 0.00000 SCALE2 0.000000 0.013193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010417 0.00000