HEADER DNA BINDING PROTEIN/DNA 19-OCT-06 2ITL TITLE THE ORIGIN BINDING DOMAIN OF THE SV40 LARGE T ANTIGEN BOUND TO THE TITLE 2 FUNCTIONAL PEN PALINDROME DNA (23 BP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 24-NT PEN ELEMENT OF THE SV40 DNA ORIGIN; COMPND 3 CHAIN: W; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 24-NT PEN ELEMENT OF THE SV40 DNA ORIGIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LARGE T ANTIGEN; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: ORIGIN BINDING DOMAIN (RESIDUES 131-259); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40; SOURCE 7 ORGANISM_TAXID: 10633; SOURCE 8 STRAIN: 776; SOURCE 9 GENE: LARGE T ANTIGEN; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.BOCHKAREVA,A.SEITOVA,A.BOCHKAREV REVDAT 6 30-AUG-23 2ITL 1 SEQADV REVDAT 5 24-JAN-18 2ITL 1 AUTHOR REVDAT 4 18-OCT-17 2ITL 1 REMARK REVDAT 3 24-FEB-09 2ITL 1 VERSN REVDAT 2 13-FEB-07 2ITL 1 JRNL REVDAT 1 12-DEC-06 2ITL 0 JRNL AUTH E.BOCHKAREVA,D.MARTYNOWSKI,A.SEITOVA,A.BOCHKAREV JRNL TITL STRUCTURE OF THE ORIGIN-BINDING DOMAIN OF SIMIAN VIRUS 40 JRNL TITL 2 LARGE T ANTIGEN BOUND TO DNA JRNL REF EMBO J. V. 25 5961 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 17139255 JRNL DOI 10.1038/SJ.EMBOJ.7601452 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1921 REMARK 3 NUCLEIC ACID ATOMS : 979 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2521 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3507 ; 1.460 ; 2.206 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.176 ;22.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;15.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1713 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1039 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1691 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.360 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 1.263 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1911 ; 2.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 2.774 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1596 ; 3.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2864 ; 3.012 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 322 ; 5.112 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2409 ; 4.055 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ITL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21300 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM DI-AMMONIUM HYDROGEN CITRATE, REMARK 280 20% PEG 3000, AND 10 MM MGCL2, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.59800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.04800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.59800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.04800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DSDNA FRAGMENT BOUND BY FOUR REMARK 300 OBDS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: W, C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.78463 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.08758 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 MET A 130 REMARK 465 LYS A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 254 REMARK 465 HIS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 MET B 130 REMARK 465 LYS B 131 REMARK 465 VAL B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 GLY B 250 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 LYS B 253 REMARK 465 GLU B 254 REMARK 465 HIS B 255 REMARK 465 ASP B 256 REMARK 465 PHE B 257 REMARK 465 ASN B 258 REMARK 465 PRO B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH W 98 O HOH W 109 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG W 29 C5 DG W 29 N7 0.046 REMARK 500 DG C 29 C5 DG C 29 N7 0.046 REMARK 500 DC C 30 O3' DC C 31 P 0.228 REMARK 500 DC C 31 O3' DG C 32 P 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA W 19 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA W 19 C5 - C6 - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DA W 19 C4 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA W 19 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA W 19 N9 - C4 - C5 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA W 19 N3 - C4 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA W 19 N1 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 DA W 19 C5 - C6 - N6 ANGL. DEV. = -11.8 DEGREES REMARK 500 DG W 20 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG W 22 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG W 22 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG W 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG W 23 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG W 28 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG W 28 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG W 29 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG W 29 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC W 30 N3 - C4 - N4 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC W 30 C5 - C4 - N4 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG W 31 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG W 32 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG W 32 O4' - C1' - C2' ANGL. DEV. = 4.4 DEGREES REMARK 500 DG W 32 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG W 32 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC W 33 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC W 33 C3' - C2' - C1' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC W 33 O4' - C1' - C2' ANGL. DEV. = 5.9 DEGREES REMARK 500 DC W 34 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC W 34 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC W 34 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC W 34 C5 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT W 35 N3 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT W 35 C5 - C4 - O4 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC W 36 O4' - C1' - N1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DG W 37 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG W 38 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT W 41 C5 - C4 - O4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC W 42 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 19 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA C 19 C5 - C6 - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DA C 19 C4 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA C 19 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 19 N9 - C4 - C5 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA C 19 N3 - C4 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA C 19 N1 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 DA C 19 C5 - C6 - N6 ANGL. DEV. = -11.8 DEGREES REMARK 500 DG C 20 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 22 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG C 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 77 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 192 -168.99 -122.35 REMARK 500 CYS A 216 53.46 -143.97 REMARK 500 PHE A 218 -1.99 82.17 REMARK 500 HIS B 148 43.51 -109.09 REMARK 500 CYS B 216 45.03 -142.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPR RELATED DB: PDB REMARK 900 RELATED ID: 2ITJ RELATED DB: PDB REMARK 900 RELATED ID: 2NL8 RELATED DB: PDB DBREF 2ITL A 131 259 UNP P03070 TALA_SV40 131 259 DBREF 2ITL B 131 259 UNP P03070 TALA_SV40 131 259 DBREF 2ITL W 19 42 PDB 2ITL 2ITL 19 42 DBREF 2ITL C 19 42 PDB 2ITL 2ITL 19 42 SEQADV 2ITL GLY A 127 UNP P03070 CLONING ARTIFACT SEQADV 2ITL SER A 128 UNP P03070 CLONING ARTIFACT SEQADV 2ITL HIS A 129 UNP P03070 CLONING ARTIFACT SEQADV 2ITL MET A 130 UNP P03070 CLONING ARTIFACT SEQADV 2ITL GLY B 127 UNP P03070 CLONING ARTIFACT SEQADV 2ITL SER B 128 UNP P03070 CLONING ARTIFACT SEQADV 2ITL HIS B 129 UNP P03070 CLONING ARTIFACT SEQADV 2ITL MET B 130 UNP P03070 CLONING ARTIFACT SEQRES 1 W 24 DA DG DA DG DG DC DC DG DA DG DG DC DG SEQRES 2 W 24 DG DC DC DT DC DG DG DC DC DT DC SEQRES 1 C 24 DA DG DA DG DG DC DC DG DA DG DG DC DC SEQRES 2 C 24 DG DC DC DT DC DG DG DC DC DT DC SEQRES 1 A 133 GLY SER HIS MET LYS VAL GLU ASP PRO LYS ASP PHE PRO SEQRES 2 A 133 SER GLU LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER SEQRES 3 A 133 ASN ARG THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS SEQRES 4 A 133 GLU LYS ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS SEQRES 5 A 133 TYR SER VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN SEQRES 6 A 133 HIS ASN ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG SEQRES 7 A 133 VAL SER ALA ILE ASN ASN TYR ALA GLN LYS LEU CYS THR SEQRES 8 A 133 PHE SER PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR SEQRES 9 A 133 LEU MET TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL SEQRES 10 A 133 ILE GLU GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP SEQRES 11 A 133 PHE ASN PRO SEQRES 1 B 133 GLY SER HIS MET LYS VAL GLU ASP PRO LYS ASP PHE PRO SEQRES 2 B 133 SER GLU LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER SEQRES 3 B 133 ASN ARG THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS SEQRES 4 B 133 GLU LYS ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS SEQRES 5 B 133 TYR SER VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN SEQRES 6 B 133 HIS ASN ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG SEQRES 7 B 133 VAL SER ALA ILE ASN ASN TYR ALA GLN LYS LEU CYS THR SEQRES 8 B 133 PHE SER PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR SEQRES 9 B 133 LEU MET TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL SEQRES 10 B 133 ILE GLU GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP SEQRES 11 B 133 PHE ASN PRO FORMUL 5 HOH *307(H2 O) HELIX 1 1 PRO A 139 LEU A 146 5 8 HELIX 2 2 THR A 164 TYR A 179 1 16 HELIX 3 3 ARG A 204 LEU A 215 1 12 HELIX 4 4 LYS A 228 ARG A 238 1 11 HELIX 5 5 THR B 164 TYR B 179 1 16 HELIX 6 6 ARG B 204 LYS B 214 1 11 HELIX 7 7 LYS B 228 LEU B 236 1 9 SHEET 1 A 5 LEU A 221 GLY A 225 0 SHEET 2 A 5 LEU A 156 THR A 163 -1 N TYR A 162 O ILE A 222 SHEET 3 A 5 HIS A 192 HIS A 203 -1 O ASN A 193 N THR A 163 SHEET 4 A 5 PHE A 183 SER A 189 -1 N SER A 185 O PHE A 196 SHEET 5 A 5 SER A 242 GLU A 246 -1 O ILE A 244 N ARG A 186 SHEET 1 B 5 LEU B 221 GLY B 225 0 SHEET 2 B 5 LEU B 156 THR B 163 -1 N ALA B 160 O LYS B 224 SHEET 3 B 5 HIS B 192 HIS B 203 -1 O HIS B 203 N LEU B 156 SHEET 4 B 5 PHE B 183 SER B 189 -1 N HIS B 187 O ILE B 194 SHEET 5 B 5 SER B 242 GLU B 246 -1 O SER B 242 N ASN B 188 CISPEP 1 ASP A 239 PRO A 240 0 7.77 CISPEP 2 ASP B 239 PRO B 240 0 -2.14 CRYST1 83.196 64.096 79.177 90.00 120.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012020 0.000000 0.007134 0.00000 SCALE2 0.000000 0.015602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014687 0.00000