HEADER TRANSFERASE 27-MAY-06 2IU6 TITLE REGULATION OF THE DHA OPERON OF LACTOCOCCUS LACTIS CAVEAT 2IU6 THR B 38 CBETA WRONG HAND THR B 323 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROXYACETONE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHAQ; COMPND 5 EC: 2.7.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: IL1403; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 OTHER_DETAILS: NESTLE KEYWDS KINASE, DIHYDROXYACETONE KINASE TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SRINIVAS,S.CHRISTEN,U.BAUMANN,B.ERNI REVDAT 5 13-DEC-23 2IU6 1 REMARK REVDAT 4 13-JUL-11 2IU6 1 VERSN REVDAT 3 24-FEB-09 2IU6 1 VERSN REVDAT 2 09-AUG-06 2IU6 1 JRNL REVDAT 1 13-JUN-06 2IU6 0 JRNL AUTH S.CHRISTEN,A.SRINIVAS,P.BAHLER,A.ZELLER,D.PRIDMORE, JRNL AUTH 2 C.BIENIOSSEK,U.BAUMANN,B.ERNI JRNL TITL REGULATION OF THE DHA OPERON OF LACTOCOCCUS LACTIS: A JRNL TITL 2 DEVIATION FROM THE RULE FOLLOWED BY THE TETR FAMILY OF JRNL TITL 3 TRANSCRIPTION REGULATORS JRNL REF J.BIOL.CHEM. V. 281 23129 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16760471 JRNL DOI 10.1074/JBC.M603486200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : -0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.286 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5100 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6898 ; 1.662 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;38.275 ;24.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;16.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;27.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 771 ; 0.290 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3796 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2366 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3518 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3240 ; 1.454 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5073 ; 1.823 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2112 ; 2.682 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1825 ; 3.938 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 188 3 REMARK 3 1 B 3 B 188 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 744 ; 0.14 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 687 ; 0.52 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 744 ; 0.63 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 687 ; 2.01 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 220 A 335 3 REMARK 3 1 B 220 B 335 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 463 ; 0.15 ; 0.05 REMARK 3 LOOSE POSITIONAL 2 A (A): 475 ; 0.36 ; 5.00 REMARK 3 TIGHT THERMAL 2 A (A**2): 463 ; 0.73 ; 0.50 REMARK 3 LOOSE THERMAL 2 A (A**2): 475 ; 2.67 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 189 REMARK 3 RESIDUE RANGE : A 210 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 81.1750 23.6490 8.7900 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: -0.0633 REMARK 3 T33: -0.0064 T12: -0.0414 REMARK 3 T13: -0.0424 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 3.8575 L22: 1.8609 REMARK 3 L33: 1.4842 L12: 0.3224 REMARK 3 L13: 0.6931 L23: 0.2899 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.1611 S13: -0.7330 REMARK 3 S21: -0.0067 S22: 0.0826 S23: -0.2349 REMARK 3 S31: 0.4260 S32: -0.0555 S33: -0.1819 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 189 REMARK 3 RESIDUE RANGE : B 210 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): 86.6880 49.7260 23.1400 REMARK 3 T TENSOR REMARK 3 T11: -0.1917 T22: -0.1101 REMARK 3 T33: -0.2251 T12: 0.0161 REMARK 3 T13: -0.0078 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.0967 L22: 0.8148 REMARK 3 L33: 1.4705 L12: 0.4244 REMARK 3 L13: -0.2560 L23: 0.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0973 S13: 0.1369 REMARK 3 S21: -0.0040 S22: -0.0298 S23: 0.0012 REMARK 3 S31: -0.0812 S32: -0.0013 S33: 0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY. REMARK 4 REMARK 4 2IU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1290028831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS-IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.38 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.95 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M DL-MALIC ACID PH 7.0, 20% PEG REMARK 280 -3350, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.53333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.53333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 190 REMARK 465 PRO A 191 REMARK 465 VAL A 192 REMARK 465 HIS A 193 REMARK 465 PHE A 194 REMARK 465 PRO A 195 REMARK 465 HIS A 196 REMARK 465 GLN A 197 REMARK 465 LYS A 198 REMARK 465 THR A 199 REMARK 465 SER A 200 REMARK 465 PHE A 201 REMARK 465 VAL A 202 REMARK 465 LEU A 203 REMARK 465 ALA A 204 REMARK 465 GLU A 205 REMARK 465 ASP A 206 REMARK 465 HIS A 336 REMARK 465 MET B 1 REMARK 465 HIS B 193 REMARK 465 PHE B 194 REMARK 465 PRO B 195 REMARK 465 HIS B 196 REMARK 465 GLN B 197 REMARK 465 LYS B 198 REMARK 465 THR B 199 REMARK 465 SER B 200 REMARK 465 PHE B 201 REMARK 465 VAL B 202 REMARK 465 LEU B 203 REMARK 465 ALA B 204 REMARK 465 GLU B 205 REMARK 465 HIS B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2092 O HOH B 2093 1.98 REMARK 500 CB CYS B 289 O HOH B 2146 2.05 REMARK 500 O ASP A 19 O HOH A 2005 2.11 REMARK 500 OD1 ASN A 137 O TYR A 139 2.15 REMARK 500 O HOH B 2032 O HOH B 2079 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 246 CB GLN B 246 CG 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 265 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 LYS B 86 CD - CE - NZ ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 -15.93 85.61 REMARK 500 MET A 66 -127.30 -125.39 REMARK 500 SER A 93 19.23 -145.35 REMARK 500 HIS A 131 48.60 -145.85 REMARK 500 ASN A 140 -24.39 90.94 REMARK 500 VAL A 148 -147.01 -135.71 REMARK 500 CYS A 298 -126.02 50.74 REMARK 500 ASN B 8 -6.29 75.29 REMARK 500 MET B 66 -128.44 -128.50 REMARK 500 PRO B 74 177.24 -58.60 REMARK 500 HIS B 131 41.91 -146.43 REMARK 500 VAL B 148 -142.82 -132.24 REMARK 500 CYS B 298 -120.38 43.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 206 GLU B 207 148.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1193 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IU4 RELATED DB: PDB REMARK 900 DIHYDROXYACETONE KINASE OPERON CO-ACTIVATOR DHA-DHAQ REMARK 999 REMARK 999 SEQUENCE REMARK 999 13 ADDITIONAL N-TERMINAL AMINO ACIDS THAT OCCUR NATURALLY REMARK 999 INCLUDED NAMELY MEFYNSTNEIPEE. THE PROTEIN IS C-TERMINAL REMARK 999 HEXA-HIS TAGGED DBREF 2IU6 A 1 13 PDB 2IU6 2IU6 1 13 DBREF 2IU6 A 14 328 UNP Q9CIW0 Q9CIW0_LACLA 1 315 DBREF 2IU6 A 329 336 PDB 2IU6 2IU6 329 336 DBREF 2IU6 B 1 13 PDB 2IU6 2IU6 1 13 DBREF 2IU6 B 14 328 UNP Q9CIW0 Q9CIW0_LACLA 1 315 DBREF 2IU6 B 329 336 PDB 2IU6 2IU6 329 336 SEQRES 1 A 336 MET GLU PHE TYR ASN SER THR ASN GLU ILE PRO GLU GLU SEQRES 2 A 336 MET LEU LYS GLY ILE ASP LEU THR TYR PRO GLN LEU THR SEQRES 3 A 336 TYR LEU PRO GLU THR GLY ILE LEU TYR ASP ASN THR TYR SEQRES 4 A 336 ASN GLU LYS THR VAL PRO ILE ILE SER GLY GLY GLY SER SEQRES 5 A 336 GLY HIS GLU PRO ALA HIS VAL GLY TYR VAL GLY SER GLY SEQRES 6 A 336 MET LEU ALA ALA ALA VAL THR GLY PRO LEU PHE ILE PRO SEQRES 7 A 336 PRO LYS SER LYS ASN ILE LEU LYS ALA ILE ARG GLN VAL SEQRES 8 A 336 ASN SER GLY LYS GLY VAL PHE VAL ILE ILE LYS ASN PHE SEQRES 9 A 336 GLU ALA ASP LEU LYS GLU PHE ASN GLU ALA ILE LYS GLU SEQRES 10 A 336 ALA ARG THR GLU GLY ILE ASP VAL ARG TYR ILE VAL SER SEQRES 11 A 336 HIS ASP ASP ILE SER VAL ASN ALA TYR ASN PHE HIS LYS SEQRES 12 A 336 ARG HIS ARG GLY VAL ALA GLY THR ILE LEU LEU HIS LYS SEQRES 13 A 336 ILE LEU GLY ALA PHE ALA LYS GLU GLY GLY SER ILE ASP SEQRES 14 A 336 GLU ILE GLU GLN LEU ALA LEU SER LEU SER PRO GLU ILE SEQRES 15 A 336 TYR THR LEU GLY VAL ALA LEU ALA PRO VAL HIS PHE PRO SEQRES 16 A 336 HIS GLN LYS THR SER PHE VAL LEU ALA GLU ASP GLU VAL SEQRES 17 A 336 SER PHE GLY ILE GLY ILE HIS GLY GLU PRO GLY TYR ARG SEQRES 18 A 336 VAL GLU LYS PHE GLU GLY SER GLU ARG ILE ALA ILE GLU SEQRES 19 A 336 LEU VAL ASN LYS LEU LYS ALA GLU ILE ASN TRP GLN LYS SEQRES 20 A 336 LYS ALA ASN LYS ASN TYR ILE LEU LEU VAL ASN GLY LEU SEQRES 21 A 336 GLY SER THR THR LEU MET GLU LEU TYR SER PHE GLN TYR SEQRES 22 A 336 ASP VAL MET ARG LEU LEU GLU LEU GLU GLY LEU SER VAL SEQRES 23 A 336 LYS PHE CYS LYS VAL GLY ASN LEU MET THR SER CYS ASP SEQRES 24 A 336 MET SER GLY ILE SER LEU THR LEU CYS SER VAL LYS ASP SEQRES 25 A 336 PRO LYS TRP LEU ASP TYR LEU ASN VAL PRO THR GLY ALA SEQRES 26 A 336 PHE ALA TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 336 MET GLU PHE TYR ASN SER THR ASN GLU ILE PRO GLU GLU SEQRES 2 B 336 MET LEU LYS GLY ILE ASP LEU THR TYR PRO GLN LEU THR SEQRES 3 B 336 TYR LEU PRO GLU THR GLY ILE LEU TYR ASP ASN THR TYR SEQRES 4 B 336 ASN GLU LYS THR VAL PRO ILE ILE SER GLY GLY GLY SER SEQRES 5 B 336 GLY HIS GLU PRO ALA HIS VAL GLY TYR VAL GLY SER GLY SEQRES 6 B 336 MET LEU ALA ALA ALA VAL THR GLY PRO LEU PHE ILE PRO SEQRES 7 B 336 PRO LYS SER LYS ASN ILE LEU LYS ALA ILE ARG GLN VAL SEQRES 8 B 336 ASN SER GLY LYS GLY VAL PHE VAL ILE ILE LYS ASN PHE SEQRES 9 B 336 GLU ALA ASP LEU LYS GLU PHE ASN GLU ALA ILE LYS GLU SEQRES 10 B 336 ALA ARG THR GLU GLY ILE ASP VAL ARG TYR ILE VAL SER SEQRES 11 B 336 HIS ASP ASP ILE SER VAL ASN ALA TYR ASN PHE HIS LYS SEQRES 12 B 336 ARG HIS ARG GLY VAL ALA GLY THR ILE LEU LEU HIS LYS SEQRES 13 B 336 ILE LEU GLY ALA PHE ALA LYS GLU GLY GLY SER ILE ASP SEQRES 14 B 336 GLU ILE GLU GLN LEU ALA LEU SER LEU SER PRO GLU ILE SEQRES 15 B 336 TYR THR LEU GLY VAL ALA LEU ALA PRO VAL HIS PHE PRO SEQRES 16 B 336 HIS GLN LYS THR SER PHE VAL LEU ALA GLU ASP GLU VAL SEQRES 17 B 336 SER PHE GLY ILE GLY ILE HIS GLY GLU PRO GLY TYR ARG SEQRES 18 B 336 VAL GLU LYS PHE GLU GLY SER GLU ARG ILE ALA ILE GLU SEQRES 19 B 336 LEU VAL ASN LYS LEU LYS ALA GLU ILE ASN TRP GLN LYS SEQRES 20 B 336 LYS ALA ASN LYS ASN TYR ILE LEU LEU VAL ASN GLY LEU SEQRES 21 B 336 GLY SER THR THR LEU MET GLU LEU TYR SER PHE GLN TYR SEQRES 22 B 336 ASP VAL MET ARG LEU LEU GLU LEU GLU GLY LEU SER VAL SEQRES 23 B 336 LYS PHE CYS LYS VAL GLY ASN LEU MET THR SER CYS ASP SEQRES 24 B 336 MET SER GLY ILE SER LEU THR LEU CYS SER VAL LYS ASP SEQRES 25 B 336 PRO LYS TRP LEU ASP TYR LEU ASN VAL PRO THR GLY ALA SEQRES 26 B 336 PHE ALA TRP LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A1190 6 HET GOL B1193 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *278(H2 O) HELIX 1 1 PRO A 11 TYR A 22 1 12 HELIX 2 2 HIS A 58 TYR A 61 5 4 HELIX 3 3 LYS A 80 ASN A 92 1 13 HELIX 4 4 PHE A 104 THR A 120 1 17 HELIX 5 5 GLY A 150 GLU A 164 1 15 HELIX 6 6 SER A 167 SER A 179 1 13 HELIX 7 7 GLY A 227 ASN A 244 1 18 HELIX 8 8 TRP A 245 LYS A 248 5 4 HELIX 9 9 THR A 264 GLU A 282 1 19 HELIX 10 10 PRO A 313 VAL A 321 1 9 HELIX 11 11 HIS A 331 HIS A 335 5 5 HELIX 12 12 PRO B 11 TYR B 22 1 12 HELIX 13 13 HIS B 58 TYR B 61 5 4 HELIX 14 14 LYS B 80 ASN B 92 1 13 HELIX 15 15 PHE B 104 GLU B 121 1 18 HELIX 16 16 GLY B 150 GLU B 164 1 15 HELIX 17 17 SER B 167 SER B 179 1 13 HELIX 18 18 GLY B 227 ASN B 244 1 18 HELIX 19 19 TRP B 245 LYS B 248 5 4 HELIX 20 20 THR B 264 GLU B 282 1 19 HELIX 21 21 PRO B 313 VAL B 321 1 9 HELIX 22 22 HIS B 331 HIS B 335 5 5 SHEET 1 AA 6 LEU A 25 LEU A 28 0 SHEET 2 AA 6 ILE A 33 ASP A 36 -1 O ILE A 33 N LEU A 28 SHEET 3 AA 6 ALA A 69 LEU A 75 -1 O ALA A 70 N LEU A 34 SHEET 4 AA 6 ILE A 46 SER A 52 1 O SER A 48 N VAL A 71 SHEET 5 AA 6 VAL A 97 LYS A 102 1 O PHE A 98 N ILE A 47 SHEET 6 AA 6 VAL A 125 SER A 130 1 O ARG A 126 N VAL A 99 SHEET 1 AB 6 ARG A 221 GLU A 223 0 SHEET 2 AB 6 VAL A 208 PHE A 210 -1 O VAL A 208 N GLU A 223 SHEET 3 AB 6 ILE A 182 ALA A 188 -1 O ALA A 188 N SER A 209 SHEET 4 AB 6 GLY A 302 SER A 309 -1 O ILE A 303 N VAL A 187 SHEET 5 AB 6 ASN A 252 GLY A 259 -1 O ILE A 254 N CYS A 308 SHEET 6 AB 6 SER A 285 GLY A 292 1 O SER A 285 N TYR A 253 SHEET 1 BA 6 LEU B 25 LEU B 28 0 SHEET 2 BA 6 ILE B 33 ASP B 36 -1 O ILE B 33 N LEU B 28 SHEET 3 BA 6 ALA B 69 LEU B 75 -1 O ALA B 70 N LEU B 34 SHEET 4 BA 6 ILE B 46 SER B 52 1 O SER B 48 N VAL B 71 SHEET 5 BA 6 VAL B 97 LYS B 102 1 O PHE B 98 N ILE B 47 SHEET 6 BA 6 VAL B 125 SER B 130 1 O ARG B 126 N VAL B 99 SHEET 1 BB 6 ARG B 221 LYS B 224 0 SHEET 2 BB 6 GLU B 207 PHE B 210 -1 O VAL B 208 N GLU B 223 SHEET 3 BB 6 ILE B 182 ALA B 190 -1 O ALA B 188 N SER B 209 SHEET 4 BB 6 GLY B 302 SER B 309 -1 O ILE B 303 N VAL B 187 SHEET 5 BB 6 ASN B 252 GLY B 259 -1 O ILE B 254 N CYS B 308 SHEET 6 BB 6 SER B 285 GLY B 292 1 O SER B 285 N TYR B 253 CISPEP 1 GLU A 55 PRO A 56 0 5.51 CISPEP 2 ALA A 57 HIS A 58 0 17.80 CISPEP 3 GLU B 55 PRO B 56 0 8.61 CISPEP 4 ALA B 57 HIS B 58 0 10.53 SITE 1 AC1 7 GLY A 50 GLY A 51 HIS A 54 PHE A 76 SITE 2 AC1 7 LYS A 102 ASP A 107 HIS A 215 SITE 1 AC2 7 GLY B 50 GLY B 51 HIS B 54 PHE B 76 SITE 2 AC2 7 LYS B 102 ASP B 107 HOH B2185 CRYST1 101.090 101.090 148.600 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009892 0.005711 0.000000 0.00000 SCALE2 0.000000 0.011423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006729 0.00000