HEADER MEMBRANE PROTEIN 02-JUN-06 2IUE TITLE PACTOLUS I-DOMAIN: FUNCTIONAL SWITCHING OF THE ROSSMANN FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-2-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PACTOLUS I-DOMAIN, RESIDUES 124-335; COMPND 5 SYNONYM: PROTEIN PACTOLUS SYNONYM: ADULT MALE BONE CDNA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS MEMBRANE PROTEIN, CD, ITC, LIMBS, MIDAS, ADMIDAS, MEMBRANE, INTEGRIN, KEYWDS 2 TITRATION, CELL ADHESION, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SEN,G.B.LEGGE REVDAT 4 15-MAY-24 2IUE 1 REMARK REVDAT 3 15-JAN-20 2IUE 1 REMARK REVDAT 2 24-FEB-09 2IUE 1 VERSN REVDAT 1 05-JUN-07 2IUE 0 JRNL AUTH M.SEN,G.B.LEGGE JRNL TITL PACTOLUS I-DOMAIN: FUNCTIONAL SWITCHING OF THE ROSSMANN JRNL TITL 2 FOLD. JRNL REF PROTEINS V. 68 626 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17523188 JRNL DOI 10.1002/PROT.21458 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : PONDER,J.W. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AFTER CALCULATING THE STRUCTURES, REMARK 3 ENSEMBLES WERE MODELLED BY PROGRAM MODELLER8V2 REMARK 4 REMARK 4 2IUE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290028958. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 5% D20, 10MM DTRIS (PH 6.9) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HNCOCA; HNCACO; HNCACB; REMARK 210 CBCACONH; HSQC- NOESY-HSQC; CN- REMARK 210 NOESY; N- NOESY; N-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : OTHER REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, DYANA, AMBER REMARK 210 8.0, MOLMOL, MODELLER REMARK 210 METHOD USED : DYANA AMBER 8.0 AND MODELLER8V2 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST POTENTIAL ENERGY REMARK 210 ENSEMBLES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: STRUCTURES WERE INITIALLY CALCULATED BY DYANA, AND REMARK 210 MODELLED BY THE MODELLER8V2,AND MINIMIZED BY THE AMBER8.0 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 THR A 183 CA - CB - CG2 ANGL. DEV. = 8.8 DEGREES REMARK 500 10 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 THR A 52 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 16 ASN A 35 OD1 - CG - ND2 ANGL. DEV. = 47.5 DEGREES REMARK 500 16 ASN A 35 CB - CG - OD1 ANGL. DEV. = -36.8 DEGREES REMARK 500 16 ASN A 35 CB - CG - ND2 ANGL. DEV. = -32.1 DEGREES REMARK 500 16 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 49 -62.12 -152.47 REMARK 500 1 ASN A 50 -19.43 177.47 REMARK 500 1 THR A 52 -177.61 163.92 REMARK 500 1 LEU A 59 108.80 -48.03 REMARK 500 1 SER A 76 -140.54 -126.80 REMARK 500 1 ASP A 115 -174.73 -61.23 REMARK 500 1 LYS A 120 -12.68 56.32 REMARK 500 1 ARG A 127 69.69 -116.55 REMARK 500 1 ASP A 138 -84.66 -117.67 REMARK 500 1 GLU A 147 -80.03 -119.94 REMARK 500 1 GLN A 151 161.20 -49.70 REMARK 500 1 ASN A 164 60.21 66.96 REMARK 500 1 LYS A 188 -11.33 86.36 REMARK 500 1 THR A 190 -142.83 -125.24 REMARK 500 1 ILE A 191 128.07 -179.04 REMARK 500 1 SER A 195 -161.71 -161.95 REMARK 500 2 VAL A 49 -126.55 -142.86 REMARK 500 2 THR A 52 176.22 147.74 REMARK 500 2 LEU A 59 109.01 -56.29 REMARK 500 2 ASN A 103 24.35 -58.54 REMARK 500 2 ASP A 115 -168.02 -69.95 REMARK 500 2 LYS A 120 -10.85 93.91 REMARK 500 2 THR A 126 37.80 70.06 REMARK 500 2 ASP A 138 -45.26 -170.94 REMARK 500 2 ARG A 145 -35.79 -37.87 REMARK 500 2 GLU A 147 -79.30 -139.75 REMARK 500 2 LYS A 188 -8.35 79.66 REMARK 500 2 THR A 190 -149.04 -116.89 REMARK 500 2 ILE A 191 131.89 -177.64 REMARK 500 2 SER A 195 -149.72 -153.92 REMARK 500 2 LYS A 211 -77.16 -138.42 REMARK 500 3 VAL A 49 -70.83 -138.00 REMARK 500 3 ASN A 50 -15.75 174.95 REMARK 500 3 ILE A 56 -61.33 -94.63 REMARK 500 3 SER A 76 -143.78 -107.78 REMARK 500 3 ASP A 115 -175.84 -66.51 REMARK 500 3 LYS A 120 1.84 80.23 REMARK 500 3 ASN A 129 107.23 -51.56 REMARK 500 3 ASP A 138 -62.10 -150.51 REMARK 500 3 PRO A 148 173.00 -55.36 REMARK 500 3 LYS A 188 -17.31 91.26 REMARK 500 3 THR A 190 -164.08 -127.94 REMARK 500 4 LEU A 12 43.70 -107.06 REMARK 500 4 VAL A 49 -101.08 -152.92 REMARK 500 4 MET A 51 48.49 -87.28 REMARK 500 4 THR A 52 -116.41 16.23 REMARK 500 4 LEU A 57 95.63 39.38 REMARK 500 4 SER A 76 -128.55 -106.48 REMARK 500 4 ASP A 115 -176.25 -58.16 REMARK 500 4 LYS A 120 -11.53 90.79 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 45 0.08 SIDE CHAIN REMARK 500 1 ARG A 145 0.18 SIDE CHAIN REMARK 500 3 PHE A 116 0.08 SIDE CHAIN REMARK 500 3 ARG A 145 0.26 SIDE CHAIN REMARK 500 3 ARG A 174 0.08 SIDE CHAIN REMARK 500 4 PHE A 45 0.09 SIDE CHAIN REMARK 500 4 ARG A 145 0.07 SIDE CHAIN REMARK 500 5 PHE A 169 0.08 SIDE CHAIN REMARK 500 8 TYR A 7 0.08 SIDE CHAIN REMARK 500 8 PHE A 45 0.08 SIDE CHAIN REMARK 500 8 ARG A 145 0.13 SIDE CHAIN REMARK 500 10 ARG A 127 0.18 SIDE CHAIN REMARK 500 11 PHE A 45 0.10 SIDE CHAIN REMARK 500 12 ARG A 106 0.08 SIDE CHAIN REMARK 500 13 ARG A 102 0.09 SIDE CHAIN REMARK 500 14 PHE A 116 0.09 SIDE CHAIN REMARK 500 14 TYR A 209 0.10 SIDE CHAIN REMARK 500 15 TYR A 209 0.07 SIDE CHAIN REMARK 500 16 PHE A 45 0.09 SIDE CHAIN REMARK 500 16 TYR A 209 0.07 SIDE CHAIN REMARK 500 17 TYR A 209 0.07 SIDE CHAIN REMARK 500 19 TYR A 7 0.08 SIDE CHAIN REMARK 500 19 ARG A 106 0.17 SIDE CHAIN REMARK 500 19 TYR A 209 0.10 SIDE CHAIN REMARK 500 20 ARG A 42 0.10 SIDE CHAIN REMARK 500 20 PHE A 45 0.10 SIDE CHAIN REMARK 500 20 TYR A 150 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7313 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS DESCRIBED IN CHEN ET AL. J. BIOL. CHEM. 273 REMARK 999 (15), 8711-8718 (1998) DBREF 2IUE A 1 212 UNP Q3UV74 Q3UV74_MOUSE 124 335 SEQRES 1 A 212 ASP ASN SER VAL ASP LEU TYR PHE LEU MET GLY LEU SER SEQRES 2 A 212 GLY SER ALA GLN GLY HIS LEU SER ASN VAL GLN THR LEU SEQRES 3 A 212 GLY SER ASP LEU LEU LYS ALA LEU ASN GLU ILE SER ARG SEQRES 4 A 212 SER GLY ARG ILE GLY PHE GLY SER ILE VAL ASN MET THR SEQRES 5 A 212 PHE GLN HIS ILE LEU LYS LEU THR ALA ASP SER SER GLN SEQRES 6 A 212 PHE GLN ARG GLU LEU ARG LYS GLN LEU VAL SER GLY LYS SEQRES 7 A 212 LEU ALA THR PRO LYS GLY GLN LEU ASP ALA VAL VAL GLN SEQRES 8 A 212 VAL ALA ILE CYS LEU GLY GLU ILE GLY TRP ARG ASN GLY SEQRES 9 A 212 THR ARG PHE LEU VAL LEU VAL THR ASP ASN ASP PHE HIS SEQRES 10 A 212 LEU ALA LYS ASP LYS THR LEU GLY THR ARG GLN ASN THR SEQRES 11 A 212 SER ASP GLY ARG CYS HIS LEU ASP ASP GLY MET TYR ARG SEQRES 12 A 212 SER ARG GLY GLU PRO ASP TYR GLN SER VAL VAL GLN LEU SEQRES 13 A 212 ALA SER LYS LEU ALA GLU ASN ASN ILE GLN PRO ILE PHE SEQRES 14 A 212 VAL VAL PRO SER ARG MET VAL LYS THR TYR GLU LYS LEU SEQRES 15 A 212 THR THR PHE ILE PRO LYS LEU THR ILE GLY GLU LEU SER SEQRES 16 A 212 ASP ASP SER SER ASN VAL ALA GLN LEU ILE ARG ASN ALA SEQRES 17 A 212 TYR SER LYS LEU HELIX 1 1 SER A 13 GLN A 17 5 5 HELIX 2 2 HIS A 19 SER A 38 1 20 HELIX 3 3 ASP A 62 LYS A 72 1 11 HELIX 4 4 GLY A 84 CYS A 95 1 12 HELIX 5 5 CYS A 95 GLY A 100 1 6 HELIX 6 6 LYS A 120 THR A 126 5 7 HELIX 7 7 ARG A 143 GLU A 147 5 5 HELIX 8 8 SER A 152 ASN A 164 1 13 HELIX 9 9 SER A 173 ILE A 186 1 14 HELIX 10 10 SER A 198 LYS A 211 1 14 SHEET 1 AA 6 PHE A 53 THR A 60 0 SHEET 2 AA 6 GLY A 41 ILE A 48 -1 O ILE A 43 N THR A 60 SHEET 3 AA 6 VAL A 4 GLY A 11 1 O VAL A 4 N ARG A 42 SHEET 4 AA 6 THR A 105 VAL A 111 1 O THR A 105 N ASP A 5 SHEET 5 AA 6 GLN A 166 PRO A 172 1 O GLN A 166 N LEU A 108 SHEET 6 AA 6 THR A 190 LEU A 194 1 O THR A 190 N PHE A 169 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1