data_2IUI # _entry.id 2IUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IUI PDBE EBI-28972 WWPDB D_1290028972 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A0N unspecified ;NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, FAMILY OF 25 STRUCTURES ; PDB 1AZG unspecified ;NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, MINIMIZED AVERAGE (PROBMAP) STRUCTURE ; PDB 1H9O unspecified ;PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF RECEPTOR, CRYSTAL STRUCTURE AT 1.79 A ; PDB 1PBW unspecified 'STRUCTURE OF BCR-HOMOLOGY (BH) DOMAIN' PDB 1PHT unspecified 'PHOSPHATIDYLINOSITOL 3-KINASE P85-ALPHA SUBUNIT SH3 DOMAIN, RESIDUES 1-85' PDB 1PIC unspecified ;PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF RECEPTOR, NMR, MINIMIZED MEAN STRUCTURE ; PDB 1PKS unspecified 'PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE)' PDB 1PKT unspecified 'PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 DOMAIN) (NMR, 30 STRUCTURES)' PDB 2IUG unspecified 'CRYSTAL STRUCTURE OF THE PI3-KINASE P85 N -TERMINAL SH2 DOMAIN' PDB 2IUH unspecified 'CRYSTAL STRUCTURE OF THE PI3-KINASE P85 N -TERMINAL SH2 DOMAIN IN COMPLEX WITH C- KIT PHOSPHOTYROSYL PEPTIDE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IUI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-06-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nolte, R.T.' 1 ? 'Eck, M.J.' 2 ? 'Schlessinger, J.' 3 ? 'Shoelson, S.E.' 4 ? 'Harrison, S.C.' 5 ? # _citation.id primary _citation.title 'Crystal Structure of the Pi 3-Kinase P85 Amino- Terminal Sh2 Domain and its Phosphopeptide Complexes' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 3 _citation.page_first 364 _citation.page_last ? _citation.year 1996 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8599763 _citation.pdbx_database_id_DOI 10.1038/NSB0496-364 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nolte, R.T.' 1 ? primary 'Eck, M.J.' 2 ? primary 'Schlessinger, J.' 3 ? primary 'Shoelson, S.E.' 4 ? primary 'Harrison, S.C.' 5 ? # _cell.entry_id 2IUI _cell.length_a 40.760 _cell.length_b 61.940 _cell.length_c 108.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IUI _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphatidylinositol 3-kinase regulatory subunit alpha' 13939.569 2 ? ? 'N-TERMINAL SH2 DOMAIN, RESIDUES 321-440' ? 2 polymer syn 'Platelet-derived growth factor receptor beta' 1392.554 2 2.7.10.1 ? ? ? 3 water nat water 18.015 117 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;PtdIns-3-kinase regulatory subunit alpha,Phosphatidylinositol 3-kinase 85 kDa regulatory subunit alpha,PtdIns-3-kinase regulatory subunit p85-alpha ; 2 ;PDGFR-beta,Beta platelet-derived growth factor receptor,Beta-type platelet-derived growth factor receptor,CD140 antigen-like family member B,Platelet-derived growth factor receptor 1,PDGFR-1 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GMNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSS VVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKED ; ;GMNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSS VVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKED ; A,B ? 2 'polypeptide(L)' no yes 'SID(PTR)VPMLDMK' SIDYVPMLDMK C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 ASN n 1 4 ASN n 1 5 ASN n 1 6 MET n 1 7 SER n 1 8 LEU n 1 9 GLN n 1 10 ASN n 1 11 ALA n 1 12 GLU n 1 13 TRP n 1 14 TYR n 1 15 TRP n 1 16 GLY n 1 17 ASP n 1 18 ILE n 1 19 SER n 1 20 ARG n 1 21 GLU n 1 22 GLU n 1 23 VAL n 1 24 ASN n 1 25 GLU n 1 26 LYS n 1 27 LEU n 1 28 ARG n 1 29 ASP n 1 30 THR n 1 31 ALA n 1 32 ASP n 1 33 GLY n 1 34 THR n 1 35 PHE n 1 36 LEU n 1 37 VAL n 1 38 ARG n 1 39 ASP n 1 40 ALA n 1 41 SER n 1 42 THR n 1 43 LYS n 1 44 MET n 1 45 HIS n 1 46 GLY n 1 47 ASP n 1 48 TYR n 1 49 THR n 1 50 LEU n 1 51 THR n 1 52 LEU n 1 53 ARG n 1 54 LYS n 1 55 GLY n 1 56 GLY n 1 57 ASN n 1 58 ASN n 1 59 LYS n 1 60 LEU n 1 61 ILE n 1 62 LYS n 1 63 ILE n 1 64 PHE n 1 65 HIS n 1 66 ARG n 1 67 ASP n 1 68 GLY n 1 69 LYS n 1 70 TYR n 1 71 GLY n 1 72 PHE n 1 73 SER n 1 74 ASP n 1 75 PRO n 1 76 LEU n 1 77 THR n 1 78 PHE n 1 79 SER n 1 80 SER n 1 81 VAL n 1 82 VAL n 1 83 GLU n 1 84 LEU n 1 85 ILE n 1 86 ASN n 1 87 HIS n 1 88 TYR n 1 89 ARG n 1 90 ASN n 1 91 GLU n 1 92 SER n 1 93 LEU n 1 94 ALA n 1 95 GLN n 1 96 TYR n 1 97 ASN n 1 98 PRO n 1 99 LYS n 1 100 LEU n 1 101 ASP n 1 102 VAL n 1 103 LYS n 1 104 LEU n 1 105 LEU n 1 106 TYR n 1 107 PRO n 1 108 VAL n 1 109 SER n 1 110 LYS n 1 111 TYR n 1 112 GLN n 1 113 GLN n 1 114 ASP n 1 115 GLN n 1 116 VAL n 1 117 VAL n 1 118 LYS n 1 119 GLU n 1 120 ASP n 2 1 SER n 2 2 ILE n 2 3 ASP n 2 4 PTR n 2 5 VAL n 2 6 PRO n 2 7 MET n 2 8 LEU n 2 9 ASP n 2 10 MET n 2 11 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 120 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PIK3R1, GRB1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP P85A_HUMAN P27986 ? 1 ;GMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSS VVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKED ; 321 2 UNP PGFRB_HUMAN P09619 ? 2 SVDYVPMLDMK 748 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IUI A 1 ? 120 ? P27986 321 ? 440 ? 0 119 2 1 2IUI B 1 ? 120 ? P27986 321 ? 440 ? 1000 1119 3 2 2IUI C 1 ? 11 ? P09619 748 ? 758 ? 201 211 4 2 2IUI D 1 ? 11 ? P09619 748 ? 758 ? 1201 1211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IUI ASN A 10 ? UNP P27986 ASP 330 conflict 9 1 2 2IUI ASN B 10 ? UNP P27986 ASP 330 conflict 1009 2 3 2IUI ILE C 2 ? UNP P09619 VAL 749 conflict 202 3 4 2IUI ILE D 2 ? UNP P09619 VAL 749 conflict 1202 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IUI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 47 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M SODIUM ACETATE PH 4.6, 0.2M AMMONIUM ACETATE, 30% PEG4000' # _diffrn.id 1 _diffrn.ambient_temp 278.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2IUI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 12930 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.3700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.50 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.31000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.920 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2IUI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1784 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1784 _refine.ls_R_factor_R_free 0.2484 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.01 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THIS COODINATES FILE WAS DEPOSITED 10 YEARS AFTER THE PUBLICATION OF THE WORK. SOME OF THE DATA ARE MISSING AND ARE SHOWN AS '00000'. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1970 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 2087 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.65 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2IUI _struct.title 'Crystal structure of the PI3-kinase p85 N-terminal SH2 domain in complex with PDGFR phosphotyrosyl peptide' _struct.pdbx_descriptor 'PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT, PDGFR PHOSPHOTYROSYL PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IUI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, PHOSPHORYLATION, P85, SH2, PI3K, SH2 DOMAIN, SH3 DOMAIN, PI3-KINASE, DISEASE MUTATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 6 ? ALA A 11 ? MET A 5 ALA A 10 1 ? 6 HELX_P HELX_P2 2 SER A 19 ? ARG A 28 ? SER A 18 ARG A 27 1 ? 10 HELX_P HELX_P3 3 SER A 80 ? ASN A 90 ? SER A 79 ASN A 89 1 ? 11 HELX_P HELX_P4 4 ASN B 5 ? ASN B 10 ? ASN B 1004 ASN B 1009 1 ? 6 HELX_P HELX_P5 5 SER B 19 ? ARG B 28 ? SER B 1018 ARG B 1027 1 ? 10 HELX_P HELX_P6 6 SER B 80 ? ASN B 90 ? SER B 1079 ASN B 1089 1 ? 11 HELX_P HELX_P7 7 LEU B 93 ? ASN B 97 ? LEU B 1092 ASN B 1096 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C ASP 3 C ? ? ? 1_555 C PTR 4 N ? ? C ASP 203 C PTR 204 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? C PTR 4 C ? ? ? 1_555 C VAL 5 N ? ? C PTR 204 C VAL 205 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? D ASP 3 C ? ? ? 1_555 D PTR 4 N ? ? D ASP 1203 D PTR 1204 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? D PTR 4 C ? ? ? 1_555 D VAL 5 N ? ? D PTR 1204 D VAL 1205 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 74 A . ? ASP 73 A PRO 75 A ? PRO 74 A 1 1.86 2 ASP 74 B . ? ASP 1073 B PRO 75 B ? PRO 1074 B 1 3.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 69 ? GLY A 71 ? LYS A 68 GLY A 70 AA 2 ASN A 57 ? ARG A 66 ? ASN A 56 ARG A 65 AA 3 TYR A 48 ? LYS A 54 ? TYR A 47 LYS A 53 AA 4 THR A 34 ? ASP A 39 ? THR A 33 ASP A 38 AA 5 TYR A 106 ? PRO A 107 ? TYR A 105 PRO A 106 BA 1 LYS B 69 ? GLY B 71 ? LYS B 1068 GLY B 1070 BA 2 ASN B 57 ? ARG B 66 ? ASN B 1056 ARG B 1065 BA 3 TYR B 48 ? LYS B 54 ? TYR B 1047 LYS B 1053 BA 4 THR B 34 ? ASP B 39 ? THR B 1033 ASP B 1038 BA 5 TYR B 106 ? PRO B 107 ? TYR B 1105 PRO B 1106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 71 ? N GLY A 70 O PHE A 64 ? O PHE A 63 AA 2 3 N ILE A 63 ? N ILE A 62 O TYR A 48 ? O TYR A 47 AA 3 4 N ARG A 53 ? N ARG A 52 O THR A 34 ? O THR A 33 AA 4 5 N PHE A 35 ? N PHE A 34 O TYR A 106 ? O TYR A 105 BA 1 2 N GLY B 71 ? N GLY B 1070 O PHE B 64 ? O PHE B 1063 BA 2 3 N ILE B 63 ? N ILE B 1062 O TYR B 48 ? O TYR B 1047 BA 3 4 N ARG B 53 ? N ARG B 1052 O THR B 34 ? O THR B 1033 BA 4 5 N PHE B 35 ? N PHE B 1034 O TYR B 106 ? O TYR B 1105 # _database_PDB_matrix.entry_id 2IUI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IUI _atom_sites.fract_transf_matrix[1][1] 0.024534 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016145 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 ASN 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 ASN 5 4 ? ? ? A . n A 1 6 MET 6 5 5 MET MET A . n A 1 7 SER 7 6 6 SER SER A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 ASN 10 9 9 ASN ASN A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 TRP 13 12 12 TRP TRP A . n A 1 14 TYR 14 13 13 TYR TYR A . n A 1 15 TRP 15 14 14 TRP TRP A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 ARG 20 19 19 ARG ARG A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 VAL 23 22 22 VAL VAL A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ARG 28 27 27 ARG ARG A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ASP 32 31 31 ASP ASP A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 ARG 38 37 37 ARG ARG A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 MET 44 43 43 MET MET A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ASN 57 56 56 ASN ASN A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 HIS 65 64 64 HIS HIS A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 ASP 67 66 66 ASP ASP A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 SER 80 79 79 SER SER A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 HIS 87 86 86 HIS HIS A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 TYR 96 95 95 TYR TYR A . n A 1 97 ASN 97 96 96 ASN ASN A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 PRO 107 106 106 PRO PRO A . n A 1 108 VAL 108 107 107 VAL VAL A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 LYS 110 109 109 LYS LYS A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 GLN 112 111 111 GLN GLN A . n A 1 113 GLN 113 112 ? ? ? A . n A 1 114 ASP 114 113 ? ? ? A . n A 1 115 GLN 115 114 ? ? ? A . n A 1 116 VAL 116 115 ? ? ? A . n A 1 117 VAL 117 116 ? ? ? A . n A 1 118 LYS 118 117 ? ? ? A . n A 1 119 GLU 119 118 ? ? ? A . n A 1 120 ASP 120 119 ? ? ? A . n B 1 1 GLY 1 1000 ? ? ? B . n B 1 2 MET 2 1001 ? ? ? B . n B 1 3 ASN 3 1002 1002 ASN ASN B . n B 1 4 ASN 4 1003 1003 ASN ASN B . n B 1 5 ASN 5 1004 1004 ASN ASN B . n B 1 6 MET 6 1005 1005 MET MET B . n B 1 7 SER 7 1006 1006 SER SER B . n B 1 8 LEU 8 1007 1007 LEU LEU B . n B 1 9 GLN 9 1008 1008 GLN GLN B . n B 1 10 ASN 10 1009 1009 ASN ASN B . n B 1 11 ALA 11 1010 1010 ALA ALA B . n B 1 12 GLU 12 1011 1011 GLU GLU B . n B 1 13 TRP 13 1012 1012 TRP TRP B . n B 1 14 TYR 14 1013 1013 TYR TYR B . n B 1 15 TRP 15 1014 1014 TRP TRP B . n B 1 16 GLY 16 1015 1015 GLY GLY B . n B 1 17 ASP 17 1016 1016 ASP ASP B . n B 1 18 ILE 18 1017 1017 ILE ILE B . n B 1 19 SER 19 1018 1018 SER SER B . n B 1 20 ARG 20 1019 1019 ARG ARG B . n B 1 21 GLU 21 1020 1020 GLU GLU B . n B 1 22 GLU 22 1021 1021 GLU GLU B . n B 1 23 VAL 23 1022 1022 VAL VAL B . n B 1 24 ASN 24 1023 1023 ASN ASN B . n B 1 25 GLU 25 1024 1024 GLU GLU B . n B 1 26 LYS 26 1025 1025 LYS LYS B . n B 1 27 LEU 27 1026 1026 LEU LEU B . n B 1 28 ARG 28 1027 1027 ARG ARG B . n B 1 29 ASP 29 1028 1028 ASP ASP B . n B 1 30 THR 30 1029 1029 THR THR B . n B 1 31 ALA 31 1030 1030 ALA ALA B . n B 1 32 ASP 32 1031 1031 ASP ASP B . n B 1 33 GLY 33 1032 1032 GLY GLY B . n B 1 34 THR 34 1033 1033 THR THR B . n B 1 35 PHE 35 1034 1034 PHE PHE B . n B 1 36 LEU 36 1035 1035 LEU LEU B . n B 1 37 VAL 37 1036 1036 VAL VAL B . n B 1 38 ARG 38 1037 1037 ARG ARG B . n B 1 39 ASP 39 1038 1038 ASP ASP B . n B 1 40 ALA 40 1039 1039 ALA ALA B . n B 1 41 SER 41 1040 1040 SER SER B . n B 1 42 THR 42 1041 1041 THR THR B . n B 1 43 LYS 43 1042 1042 LYS LYS B . n B 1 44 MET 44 1043 1043 MET MET B . n B 1 45 HIS 45 1044 1044 HIS HIS B . n B 1 46 GLY 46 1045 1045 GLY GLY B . n B 1 47 ASP 47 1046 1046 ASP ASP B . n B 1 48 TYR 48 1047 1047 TYR TYR B . n B 1 49 THR 49 1048 1048 THR THR B . n B 1 50 LEU 50 1049 1049 LEU LEU B . n B 1 51 THR 51 1050 1050 THR THR B . n B 1 52 LEU 52 1051 1051 LEU LEU B . n B 1 53 ARG 53 1052 1052 ARG ARG B . n B 1 54 LYS 54 1053 1053 LYS LYS B . n B 1 55 GLY 55 1054 1054 GLY GLY B . n B 1 56 GLY 56 1055 1055 GLY GLY B . n B 1 57 ASN 57 1056 1056 ASN ASN B . n B 1 58 ASN 58 1057 1057 ASN ASN B . n B 1 59 LYS 59 1058 1058 LYS LYS B . n B 1 60 LEU 60 1059 1059 LEU LEU B . n B 1 61 ILE 61 1060 1060 ILE ILE B . n B 1 62 LYS 62 1061 1061 LYS LYS B . n B 1 63 ILE 63 1062 1062 ILE ILE B . n B 1 64 PHE 64 1063 1063 PHE PHE B . n B 1 65 HIS 65 1064 1064 HIS HIS B . n B 1 66 ARG 66 1065 1065 ARG ARG B . n B 1 67 ASP 67 1066 1066 ASP ASP B . n B 1 68 GLY 68 1067 1067 GLY GLY B . n B 1 69 LYS 69 1068 1068 LYS LYS B . n B 1 70 TYR 70 1069 1069 TYR TYR B . n B 1 71 GLY 71 1070 1070 GLY GLY B . n B 1 72 PHE 72 1071 1071 PHE PHE B . n B 1 73 SER 73 1072 1072 SER SER B . n B 1 74 ASP 74 1073 1073 ASP ASP B . n B 1 75 PRO 75 1074 1074 PRO PRO B . n B 1 76 LEU 76 1075 1075 LEU LEU B . n B 1 77 THR 77 1076 1076 THR THR B . n B 1 78 PHE 78 1077 1077 PHE PHE B . n B 1 79 SER 79 1078 1078 SER SER B . n B 1 80 SER 80 1079 1079 SER SER B . n B 1 81 VAL 81 1080 1080 VAL VAL B . n B 1 82 VAL 82 1081 1081 VAL VAL B . n B 1 83 GLU 83 1082 1082 GLU GLU B . n B 1 84 LEU 84 1083 1083 LEU LEU B . n B 1 85 ILE 85 1084 1084 ILE ILE B . n B 1 86 ASN 86 1085 1085 ASN ASN B . n B 1 87 HIS 87 1086 1086 HIS HIS B . n B 1 88 TYR 88 1087 1087 TYR TYR B . n B 1 89 ARG 89 1088 1088 ARG ARG B . n B 1 90 ASN 90 1089 1089 ASN ASN B . n B 1 91 GLU 91 1090 1090 GLU GLU B . n B 1 92 SER 92 1091 1091 SER SER B . n B 1 93 LEU 93 1092 1092 LEU LEU B . n B 1 94 ALA 94 1093 1093 ALA ALA B . n B 1 95 GLN 95 1094 1094 GLN GLN B . n B 1 96 TYR 96 1095 1095 TYR TYR B . n B 1 97 ASN 97 1096 1096 ASN ASN B . n B 1 98 PRO 98 1097 1097 PRO PRO B . n B 1 99 LYS 99 1098 1098 LYS LYS B . n B 1 100 LEU 100 1099 1099 LEU LEU B . n B 1 101 ASP 101 1100 1100 ASP ASP B . n B 1 102 VAL 102 1101 1101 VAL VAL B . n B 1 103 LYS 103 1102 1102 LYS LYS B . n B 1 104 LEU 104 1103 1103 LEU LEU B . n B 1 105 LEU 105 1104 1104 LEU LEU B . n B 1 106 TYR 106 1105 1105 TYR TYR B . n B 1 107 PRO 107 1106 1106 PRO PRO B . n B 1 108 VAL 108 1107 1107 VAL VAL B . n B 1 109 SER 109 1108 1108 SER SER B . n B 1 110 LYS 110 1109 1109 LYS LYS B . n B 1 111 TYR 111 1110 1110 TYR TYR B . n B 1 112 GLN 112 1111 1111 GLN GLN B . n B 1 113 GLN 113 1112 ? ? ? B . n B 1 114 ASP 114 1113 ? ? ? B . n B 1 115 GLN 115 1114 ? ? ? B . n B 1 116 VAL 116 1115 ? ? ? B . n B 1 117 VAL 117 1116 ? ? ? B . n B 1 118 LYS 118 1117 ? ? ? B . n B 1 119 GLU 119 1118 ? ? ? B . n B 1 120 ASP 120 1119 ? ? ? B . n C 2 1 SER 1 201 201 SER SER C . n C 2 2 ILE 2 202 202 ILE ILE C . n C 2 3 ASP 3 203 203 ASP ASP C . n C 2 4 PTR 4 204 204 PTR PTR C . n C 2 5 VAL 5 205 205 VAL VAL C . n C 2 6 PRO 6 206 206 PRO PRO C . n C 2 7 MET 7 207 207 MET MET C . n C 2 8 LEU 8 208 208 LEU LEU C . n C 2 9 ASP 9 209 209 ASP ASP C . n C 2 10 MET 10 210 210 MET MET C . n C 2 11 LYS 11 211 211 LYS LYS C . n D 2 1 SER 1 1201 1201 SER SER D . n D 2 2 ILE 2 1202 1202 ILE ILE D . n D 2 3 ASP 3 1203 1203 ASP ASP D . n D 2 4 PTR 4 1204 1204 PTR PTR D . n D 2 5 VAL 5 1205 1205 VAL VAL D . n D 2 6 PRO 6 1206 1206 PRO PRO D . n D 2 7 MET 7 1207 1207 MET MET D . n D 2 8 LEU 8 1208 1208 LEU LEU D . n D 2 9 ASP 9 1209 1209 ASP ASP D . n D 2 10 MET 10 1210 1210 MET MET D . n D 2 11 LYS 11 1211 1211 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . E 3 HOH 49 2049 2049 HOH HOH A . E 3 HOH 50 2050 2050 HOH HOH A . E 3 HOH 51 2051 2051 HOH HOH A . E 3 HOH 52 2052 2052 HOH HOH A . E 3 HOH 53 2053 2053 HOH HOH A . E 3 HOH 54 2054 2054 HOH HOH A . E 3 HOH 55 2055 2055 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . F 3 HOH 34 2034 2034 HOH HOH B . F 3 HOH 35 2035 2035 HOH HOH B . F 3 HOH 36 2036 2036 HOH HOH B . F 3 HOH 37 2037 2037 HOH HOH B . F 3 HOH 38 2038 2038 HOH HOH B . F 3 HOH 39 2039 2039 HOH HOH B . F 3 HOH 40 2040 2040 HOH HOH B . F 3 HOH 41 2041 2041 HOH HOH B . G 3 HOH 1 2001 2001 HOH HOH C . G 3 HOH 2 2002 2002 HOH HOH C . G 3 HOH 3 2003 2003 HOH HOH C . G 3 HOH 4 2004 2004 HOH HOH C . G 3 HOH 5 2005 2005 HOH HOH C . G 3 HOH 6 2006 2006 HOH HOH C . G 3 HOH 7 2007 2007 HOH HOH C . G 3 HOH 8 2008 2008 HOH HOH C . G 3 HOH 9 2009 2009 HOH HOH C . G 3 HOH 10 2010 2010 HOH HOH C . G 3 HOH 11 2011 2011 HOH HOH C . G 3 HOH 12 2012 2012 HOH HOH C . G 3 HOH 13 2013 2013 HOH HOH C . H 3 HOH 1 2001 2001 HOH HOH D . H 3 HOH 2 2002 2002 HOH HOH D . H 3 HOH 3 2003 2003 HOH HOH D . H 3 HOH 4 2004 2004 HOH HOH D . H 3 HOH 5 2005 2005 HOH HOH D . H 3 HOH 6 2006 2006 HOH HOH D . H 3 HOH 7 2007 2007 HOH HOH D . H 3 HOH 8 2008 2008 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C PTR 4 C PTR 204 ? TYR 'modified residue' 2 D PTR 4 D PTR 1204 ? TYR 'modified residue' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G 2 1 B,D,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-06 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2021-04-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity 2 4 'Structure model' entity_name_com 3 4 'Structure model' entity_src_gen 4 4 'Structure model' pdbx_entity_src_syn 5 4 'Structure model' struct_ref 6 4 'Structure model' struct_ref_seq 7 4 'Structure model' struct_ref_seq_dif 8 5 'Structure model' refine 9 5 'Structure model' reflns 10 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity.pdbx_description' 2 4 'Structure model' '_entity.pdbx_ec' 3 4 'Structure model' '_entity.src_method' 4 4 'Structure model' '_struct_ref.db_code' 5 4 'Structure model' '_struct_ref.db_name' 6 4 'Structure model' '_struct_ref.pdbx_align_begin' 7 4 'Structure model' '_struct_ref.pdbx_db_accession' 8 4 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 9 4 'Structure model' '_struct_ref_seq.db_align_beg' 10 4 'Structure model' '_struct_ref_seq.db_align_end' 11 4 'Structure model' '_struct_ref_seq.pdbx_db_accession' 12 5 'Structure model' '_refine.ls_number_reflns_obs' 13 5 'Structure model' '_refine.ls_percent_reflns_obs' 14 5 'Structure model' '_refine.pdbx_ls_sigma_F' 15 5 'Structure model' '_reflns.observed_criterion_sigma_I' 16 5 'Structure model' '_reflns.pdbx_redundancy' 17 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 16 ? ? -94.30 57.87 2 1 ASP A 28 ? ? 80.70 9.62 3 1 MET A 43 ? ? 21.73 59.73 4 1 ASP A 66 ? ? 54.63 -117.89 5 1 ASN A 96 ? ? -174.87 114.57 6 1 LEU A 99 ? ? -103.06 50.33 7 1 MET B 1043 ? ? 24.31 60.67 8 1 ASP B 1066 ? ? 50.41 -120.21 9 1 LEU B 1099 ? ? -101.12 58.22 10 1 ASP C 203 ? ? -129.21 -86.89 11 1 ASP D 1203 ? ? -127.96 -87.87 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2005 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.82 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A ASN 2 ? A ASN 3 4 1 Y 1 A ASN 3 ? A ASN 4 5 1 Y 1 A ASN 4 ? A ASN 5 6 1 Y 1 A GLN 112 ? A GLN 113 7 1 Y 1 A ASP 113 ? A ASP 114 8 1 Y 1 A GLN 114 ? A GLN 115 9 1 Y 1 A VAL 115 ? A VAL 116 10 1 Y 1 A VAL 116 ? A VAL 117 11 1 Y 1 A LYS 117 ? A LYS 118 12 1 Y 1 A GLU 118 ? A GLU 119 13 1 Y 1 A ASP 119 ? A ASP 120 14 1 Y 1 B GLY 1000 ? B GLY 1 15 1 Y 1 B MET 1001 ? B MET 2 16 1 Y 1 B GLN 1112 ? B GLN 113 17 1 Y 1 B ASP 1113 ? B ASP 114 18 1 Y 1 B GLN 1114 ? B GLN 115 19 1 Y 1 B VAL 1115 ? B VAL 116 20 1 Y 1 B VAL 1116 ? B VAL 117 21 1 Y 1 B LYS 1117 ? B LYS 118 22 1 Y 1 B GLU 1118 ? B GLU 119 23 1 Y 1 B ASP 1119 ? B ASP 120 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #