HEADER OXIDOREDUCTASE 08-JUN-06 2IV0 TITLE THERMAL STABILITY OF ISOCITRATE DEHYDROGENASE FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS STUDIED BY CRYSTAL STRUCTURE ANALYSIS AND ENGINEERING OF TITLE 3 CHIMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NADP, OXALOSUCCINATE DECARBOXYLASE, IDH, NADP(+)-SPECIFIC COMPND 5 ICDH, IDP; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EB106 KEYWDS OXIDOREDUCTASE, ARCHAEOGLOBUS FULGIDUS, TRICARBOXYLIC ACID CYCLE, KEYWDS 2 ISOCITRATE DEHYDROGENASE, DOMAIN SWAPPING, PHOSPHORYLATION, AROMATIC KEYWDS 3 CLUSTER, NADP, IONIC NETWORKS, THERMAL STABILITY, GLYOXYLATE BYPASS EXPDTA X-RAY DIFFRACTION AUTHOR R.STOKKE,M.KARLSTROM,N.YANG,I.LEIROS,R.LADENSTEIN,N.K.BIRKELAND, AUTHOR 2 I.H.STEEN REVDAT 4 13-DEC-23 2IV0 1 LINK REVDAT 3 24-FEB-09 2IV0 1 VERSN REVDAT 2 03-JUL-07 2IV0 1 JRNL REVDAT 1 17-APR-07 2IV0 0 JRNL AUTH R.STOKKE,M.KARLSTROM,N.YANG,I.LEIROS,R.LADENSTEIN, JRNL AUTH 2 N.K.BIRKELAND,I.H.STEEN JRNL TITL THERMAL STABILITY OF ISOCITRATE DEHYDROGENASE FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS STUDIED BY CRYSTAL STRUCTURE ANALYSIS JRNL TITL 3 AND ENGINEERING OF CHIMERS JRNL REF EXTREMOPHILES V. 11 481 2007 JRNL REFN ISSN 1431-0651 JRNL PMID 17401542 JRNL DOI 10.1007/S00792-006-0060-Z REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6451 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.635 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.301 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6588 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8920 ; 1.785 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 7.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;38.749 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;23.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 962 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5034 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3238 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4479 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.315 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4173 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6556 ; 1.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2768 ; 2.220 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 3.721 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 2IV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M ZNSO4, 0.1M NACACODYLATE, PH6.3, REMARK 280 PH 6.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.70250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CB CG CD OE1 NE2 REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLN B 2 CB CG CD OE1 NE2 REMARK 470 VAL B 6 CB CG1 CG2 REMARK 470 LYS B 7 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 274 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 295 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 LEU A 409 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 LEU B 314 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -134.74 45.10 REMARK 500 ASN A 27 57.62 -117.10 REMARK 500 ASP A 41 -60.42 -92.22 REMARK 500 ARG A 92 -18.47 83.42 REMARK 500 VAL A 103 89.77 -37.52 REMARK 500 TYR A 107 -101.70 84.92 REMARK 500 ARG A 108 46.90 -85.65 REMARK 500 ASN A 144 81.94 -152.13 REMARK 500 GLU A 153 -153.66 -117.53 REMARK 500 ASP A 154 -176.83 74.12 REMARK 500 GLU A 160 145.30 -175.75 REMARK 500 ASP A 186 34.36 -74.81 REMARK 500 ASN A 214 60.97 39.87 REMARK 500 MET A 227 73.05 -116.91 REMARK 500 THR A 230 -75.25 -112.57 REMARK 500 LYS A 263 -122.19 -64.36 REMARK 500 GLN A 264 91.77 162.31 REMARK 500 ASP A 291 -83.18 -131.41 REMARK 500 ALA A 336 72.30 25.92 REMARK 500 PRO A 337 -66.81 -29.00 REMARK 500 LYS A 338 81.35 -65.51 REMARK 500 TYR A 339 -16.22 161.67 REMARK 500 GLU B 4 -79.77 -71.81 REMARK 500 VAL B 6 135.97 -171.44 REMARK 500 ASN B 19 -68.24 73.26 REMARK 500 PRO B 25 -168.54 -59.37 REMARK 500 ASP B 55 -1.36 -59.15 REMARK 500 VAL B 66 -169.87 -111.77 REMARK 500 ARG B 92 -19.45 78.81 REMARK 500 TYR B 107 -99.20 60.48 REMARK 500 ARG B 108 66.70 -115.98 REMARK 500 ASN B 144 84.07 -155.78 REMARK 500 GLU B 153 -150.48 -132.49 REMARK 500 ASP B 154 -171.59 72.34 REMARK 500 ASP B 186 32.61 -68.91 REMARK 500 ASN B 214 59.96 36.80 REMARK 500 PHE B 246 33.94 -140.93 REMARK 500 ASP B 288 -33.99 -38.42 REMARK 500 ASP B 291 -78.35 -118.53 REMARK 500 ALA B 336 104.68 16.27 REMARK 500 TYR B 339 33.89 33.91 REMARK 500 TRP B 363 47.77 -75.47 REMARK 500 TYR B 385 -67.08 -28.71 REMARK 500 ARG B 389 -70.09 -48.64 REMARK 500 MET B 391 53.38 -164.29 REMARK 500 LYS B 395 -136.59 -124.98 REMARK 500 VAL B 396 139.02 114.92 REMARK 500 SER B 411 46.15 -86.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1413 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD2 REMARK 620 2 HOH A2066 O 87.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 277 OD2 REMARK 620 2 ASP B 301 OD1 112.1 REMARK 620 3 ASP B 305 OD2 99.7 108.5 REMARK 620 4 CL B1418 CL 96.2 124.0 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1415 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 ASP A 305 OD2 101.1 REMARK 620 3 CL A1418 CL 135.4 111.6 REMARK 620 4 ASP B 277 OD2 110.1 94.8 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 388 NE2 REMARK 620 2 GLY A 393 O 81.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1417 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 139 ND1 REMARK 620 2 GLU B 141 OE2 116.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1416 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 196 OE2 REMARK 620 2 GLU B 196 OE1 52.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1413 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 400 OE2 REMARK 620 2 HOH B2028 O 119.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1418 DBREF 2IV0 A 1 412 UNP O29610 IDH_ARCFU 1 412 DBREF 2IV0 B 1 412 UNP O29610 IDH_ARCFU 1 412 SEQRES 1 A 412 MET GLN TYR GLU LYS VAL LYS PRO PRO GLU ASN GLY GLU SEQRES 2 A 412 LYS ILE ARG TYR GLU ASN GLY LYS LEU ILE VAL PRO ASP SEQRES 3 A 412 ASN PRO ILE ILE PRO TYR PHE GLU GLY ASP GLY ILE GLY SEQRES 4 A 412 LYS ASP VAL VAL PRO ALA ALA ILE ARG VAL LEU ASP ALA SEQRES 5 A 412 ALA ALA ASP LYS ILE GLY LYS GLU VAL VAL TRP PHE GLN SEQRES 6 A 412 VAL TYR ALA GLY GLU ASP ALA TYR LYS LEU TYR GLY ASN SEQRES 7 A 412 TYR LEU PRO ASP ASP THR LEU ASN ALA ILE LYS GLU PHE SEQRES 8 A 412 ARG VAL ALA LEU LYS GLY PRO LEU THR THR PRO VAL GLY SEQRES 9 A 412 GLY GLY TYR ARG SER LEU ASN VAL THR ILE ARG GLN VAL SEQRES 10 A 412 LEU ASP LEU TYR ALA ASN VAL ARG PRO VAL TYR TYR LEU SEQRES 11 A 412 LYS GLY VAL PRO SER PRO ILE LYS HIS PRO GLU LYS VAL SEQRES 12 A 412 ASN PHE VAL ILE PHE ARG GLU ASN THR GLU ASP VAL TYR SEQRES 13 A 412 ALA GLY ILE GLU TRP PRO ARG GLY SER GLU GLU ALA LEU SEQRES 14 A 412 LYS LEU ILE ARG PHE LEU LYS ASN GLU PHE GLY VAL THR SEQRES 15 A 412 ILE ARG GLU ASP SER GLY ILE GLY ILE LYS PRO ILE SER SEQRES 16 A 412 GLU PHE ALA THR LYS ARG LEU VAL ARG MET ALA ILE ARG SEQRES 17 A 412 TYR ALA ILE GLU ASN ASN ARG LYS SER VAL THR LEU VAL SEQRES 18 A 412 HIS LYS GLY ASN ILE MET LYS TYR THR GLU GLY ALA PHE SEQRES 19 A 412 ARG ASP TRP GLY TYR GLU VAL ALA LYS GLN GLU PHE GLY SEQRES 20 A 412 GLU TYR CYS ILE THR GLU ASP GLU LEU TRP ASP LYS TYR SEQRES 21 A 412 GLY GLY LYS GLN PRO GLU GLY LYS ILE VAL VAL LYS ASP SEQRES 22 A 412 ARG ILE ALA ASP ASN MET PHE GLN GLN ILE LEU THR ARG SEQRES 23 A 412 THR ASP GLU TYR ASP VAL ILE ALA LEU PRO ASN LEU ASN SEQRES 24 A 412 GLY ASP TYR LEU SER ASP ALA ALA ALA ALA LEU ILE GLY SEQRES 25 A 412 GLY LEU GLY ILE ALA PRO GLY SER ASN ILE GLY ASP GLY SEQRES 26 A 412 ILE GLY VAL PHE GLU PRO VAL HIS GLY SER ALA PRO LYS SEQRES 27 A 412 TYR ALA GLY GLN ASN LYS VAL ASN PRO THR ALA GLU ILE SEQRES 28 A 412 LEU THR GLY ALA LEU MET PHE GLU TYR ILE GLY TRP LYS SEQRES 29 A 412 ASP ALA SER GLU MET ILE LYS LYS ALA VAL GLU MET THR SEQRES 30 A 412 ILE SER SER GLY ILE VAL THR TYR ASP ILE HIS ARG HIS SEQRES 31 A 412 MET GLY GLY THR LYS VAL GLY THR ARG GLU PHE ALA GLU SEQRES 32 A 412 ALA VAL VAL GLU ASN LEU GLN SER LEU SEQRES 1 B 412 MET GLN TYR GLU LYS VAL LYS PRO PRO GLU ASN GLY GLU SEQRES 2 B 412 LYS ILE ARG TYR GLU ASN GLY LYS LEU ILE VAL PRO ASP SEQRES 3 B 412 ASN PRO ILE ILE PRO TYR PHE GLU GLY ASP GLY ILE GLY SEQRES 4 B 412 LYS ASP VAL VAL PRO ALA ALA ILE ARG VAL LEU ASP ALA SEQRES 5 B 412 ALA ALA ASP LYS ILE GLY LYS GLU VAL VAL TRP PHE GLN SEQRES 6 B 412 VAL TYR ALA GLY GLU ASP ALA TYR LYS LEU TYR GLY ASN SEQRES 7 B 412 TYR LEU PRO ASP ASP THR LEU ASN ALA ILE LYS GLU PHE SEQRES 8 B 412 ARG VAL ALA LEU LYS GLY PRO LEU THR THR PRO VAL GLY SEQRES 9 B 412 GLY GLY TYR ARG SER LEU ASN VAL THR ILE ARG GLN VAL SEQRES 10 B 412 LEU ASP LEU TYR ALA ASN VAL ARG PRO VAL TYR TYR LEU SEQRES 11 B 412 LYS GLY VAL PRO SER PRO ILE LYS HIS PRO GLU LYS VAL SEQRES 12 B 412 ASN PHE VAL ILE PHE ARG GLU ASN THR GLU ASP VAL TYR SEQRES 13 B 412 ALA GLY ILE GLU TRP PRO ARG GLY SER GLU GLU ALA LEU SEQRES 14 B 412 LYS LEU ILE ARG PHE LEU LYS ASN GLU PHE GLY VAL THR SEQRES 15 B 412 ILE ARG GLU ASP SER GLY ILE GLY ILE LYS PRO ILE SER SEQRES 16 B 412 GLU PHE ALA THR LYS ARG LEU VAL ARG MET ALA ILE ARG SEQRES 17 B 412 TYR ALA ILE GLU ASN ASN ARG LYS SER VAL THR LEU VAL SEQRES 18 B 412 HIS LYS GLY ASN ILE MET LYS TYR THR GLU GLY ALA PHE SEQRES 19 B 412 ARG ASP TRP GLY TYR GLU VAL ALA LYS GLN GLU PHE GLY SEQRES 20 B 412 GLU TYR CYS ILE THR GLU ASP GLU LEU TRP ASP LYS TYR SEQRES 21 B 412 GLY GLY LYS GLN PRO GLU GLY LYS ILE VAL VAL LYS ASP SEQRES 22 B 412 ARG ILE ALA ASP ASN MET PHE GLN GLN ILE LEU THR ARG SEQRES 23 B 412 THR ASP GLU TYR ASP VAL ILE ALA LEU PRO ASN LEU ASN SEQRES 24 B 412 GLY ASP TYR LEU SER ASP ALA ALA ALA ALA LEU ILE GLY SEQRES 25 B 412 GLY LEU GLY ILE ALA PRO GLY SER ASN ILE GLY ASP GLY SEQRES 26 B 412 ILE GLY VAL PHE GLU PRO VAL HIS GLY SER ALA PRO LYS SEQRES 27 B 412 TYR ALA GLY GLN ASN LYS VAL ASN PRO THR ALA GLU ILE SEQRES 28 B 412 LEU THR GLY ALA LEU MET PHE GLU TYR ILE GLY TRP LYS SEQRES 29 B 412 ASP ALA SER GLU MET ILE LYS LYS ALA VAL GLU MET THR SEQRES 30 B 412 ILE SER SER GLY ILE VAL THR TYR ASP ILE HIS ARG HIS SEQRES 31 B 412 MET GLY GLY THR LYS VAL GLY THR ARG GLU PHE ALA GLU SEQRES 32 B 412 ALA VAL VAL GLU ASN LEU GLN SER LEU HET ZN A1413 1 HET ZN A1414 1 HET ZN A1415 1 HET ZN A1416 1 HET CL A1417 1 HET CL A1418 1 HET ZN B1413 1 HET ZN B1414 1 HET ZN B1415 1 HET ZN B1416 1 HET ZN B1417 1 HET CL B1418 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 9(ZN 2+) FORMUL 7 CL 3(CL 1-) FORMUL 15 HOH *94(H2 O) HELIX 1 1 ILE A 38 GLY A 58 1 21 HELIX 2 2 GLY A 69 GLY A 77 1 9 HELIX 3 3 PRO A 81 ARG A 92 1 12 HELIX 4 4 ARG A 108 LEU A 118 1 11 HELIX 5 5 HIS A 139 LYS A 142 5 4 HELIX 6 6 ASP A 154 GLY A 158 5 5 HELIX 7 7 SER A 165 GLY A 180 1 16 HELIX 8 8 GLU A 196 ASN A 213 1 18 HELIX 9 9 THR A 230 PHE A 246 1 17 HELIX 10 10 THR A 252 GLY A 261 1 10 HELIX 11 11 ASN A 278 ARG A 286 1 9 HELIX 12 12 THR A 287 TYR A 290 5 4 HELIX 13 13 PRO A 296 ILE A 311 1 16 HELIX 14 14 GLY A 313 ILE A 316 5 4 HELIX 15 15 PRO A 347 ILE A 361 1 15 HELIX 16 16 TRP A 363 SER A 380 1 18 HELIX 17 17 THR A 384 GLY A 392 1 9 HELIX 18 18 GLY A 397 LEU A 412 1 16 HELIX 19 19 ILE B 38 ASP B 55 1 18 HELIX 20 20 GLY B 69 LYS B 74 1 6 HELIX 21 21 PRO B 81 ARG B 92 1 12 HELIX 22 22 ARG B 108 ASP B 119 1 12 HELIX 23 23 HIS B 139 LYS B 142 5 4 HELIX 24 24 ASP B 154 GLY B 158 5 5 HELIX 25 25 SER B 165 GLY B 180 1 16 HELIX 26 26 GLU B 196 ASN B 214 1 19 HELIX 27 27 THR B 230 PHE B 246 1 17 HELIX 28 28 THR B 252 ASP B 258 1 7 HELIX 29 29 ALA B 276 ARG B 286 1 11 HELIX 30 30 THR B 287 TYR B 290 5 4 HELIX 31 31 PRO B 296 ILE B 311 1 16 HELIX 32 32 GLY B 313 ALA B 317 5 5 HELIX 33 33 PRO B 347 GLY B 362 1 16 HELIX 34 34 TRP B 363 GLY B 381 1 19 HELIX 35 35 THR B 384 ARG B 389 1 6 HELIX 36 36 HIS B 390 GLY B 392 5 3 HELIX 37 37 GLY B 397 SER B 411 1 15 SHEET 1 AA 2 ARG A 16 GLU A 18 0 SHEET 2 AA 2 LYS A 21 ILE A 23 -1 O LYS A 21 N GLU A 18 SHEET 1 AB11 VAL A 62 GLN A 65 0 SHEET 2 AB11 ILE A 29 PHE A 33 1 O ILE A 30 N PHE A 64 SHEET 3 AB11 VAL A 93 LYS A 96 1 O LEU A 95 N PHE A 33 SHEET 4 AB11 ILE A 326 PRO A 331 1 O GLY A 327 N ALA A 94 SHEET 5 AB11 PRO A 318 GLY A 323 -1 O GLY A 319 N GLU A 330 SHEET 6 AB11 ALA A 122 TYR A 128 -1 O ALA A 122 N ILE A 322 SHEET 7 AB11 ASN A 144 GLU A 150 -1 O PHE A 145 N VAL A 127 SHEET 8 AB11 VAL A 292 LEU A 295 1 O ILE A 293 N PHE A 148 SHEET 9 AB11 SER A 217 HIS A 222 1 O SER A 217 N VAL A 292 SHEET 10 AB11 ILE A 269 ILE A 275 1 O VAL A 270 N VAL A 218 SHEET 11 AB11 CYS A 250 ILE A 251 1 O ILE A 251 N VAL A 271 SHEET 1 AC 4 GLU A 160 TRP A 161 0 SHEET 2 AC 4 SER A 187 SER A 195 -1 O ILE A 189 N TRP A 161 SHEET 3 AC 4 SER B 187 SER B 195 -1 O GLY B 188 N ILE A 194 SHEET 4 AC 4 GLU B 160 TRP B 161 -1 O TRP B 161 N ILE B 189 SHEET 1 AD 2 ILE A 382 VAL A 383 0 SHEET 2 AD 2 THR A 394 LYS A 395 1 O THR A 394 N VAL A 383 SHEET 1 BA 2 ARG B 16 GLU B 18 0 SHEET 2 BA 2 LYS B 21 ILE B 23 -1 O LYS B 21 N GLU B 18 SHEET 1 BB11 VAL B 62 GLN B 65 0 SHEET 2 BB11 ILE B 29 PHE B 33 1 O ILE B 30 N PHE B 64 SHEET 3 BB11 VAL B 93 LYS B 96 1 O LEU B 95 N PHE B 33 SHEET 4 BB11 ILE B 326 PHE B 329 1 O GLY B 327 N ALA B 94 SHEET 5 BB11 ASN B 321 GLY B 323 -1 O ASN B 321 N VAL B 328 SHEET 6 BB11 ALA B 122 TYR B 128 -1 O ALA B 122 N ILE B 322 SHEET 7 BB11 ASN B 144 GLU B 150 -1 O PHE B 145 N VAL B 127 SHEET 8 BB11 VAL B 292 LEU B 295 1 O ILE B 293 N PHE B 148 SHEET 9 BB11 SER B 217 HIS B 222 1 O SER B 217 N VAL B 292 SHEET 10 BB11 ILE B 269 ILE B 275 1 O VAL B 270 N VAL B 218 SHEET 11 BB11 CYS B 250 ILE B 251 1 O ILE B 251 N VAL B 271 LINK OD2 ASP A 26 ZN ZN A1413 1555 1555 2.05 LINK OE2 GLU A 196 ZN ZN A1416 1555 1555 2.58 LINK OD2 ASP A 277 ZN ZN B1414 1555 1555 1.99 LINK OD1 ASP A 301 ZN ZN A1415 1555 1555 2.04 LINK OD2 ASP A 305 ZN ZN A1415 1555 1555 2.09 LINK NE2 HIS A 388 ZN ZN A1414 1555 1555 2.43 LINK O GLY A 393 ZN ZN A1414 1555 1555 2.01 LINK ZN ZN A1413 O HOH A2066 1555 1555 2.02 LINK ZN ZN A1415 CL CL A1418 1555 1555 2.76 LINK ZN ZN A1415 OD2 ASP B 277 1555 1555 1.83 LINK ND1 HIS B 139 ZN ZN B1417 1555 1555 1.98 LINK OE2 GLU B 141 ZN ZN B1417 1555 1555 1.97 LINK OE2 GLU B 196 ZN ZN B1416 1555 1555 2.55 LINK OE1 GLU B 196 ZN ZN B1416 1555 1555 2.41 LINK OE2 GLU B 240 ZN ZN B1415 1555 1555 2.69 LINK OD1 ASP B 301 ZN ZN B1414 1555 1555 2.09 LINK OD2 ASP B 305 ZN ZN B1414 1555 1555 1.89 LINK OE2 GLU B 400 ZN ZN B1413 1555 1555 1.95 LINK ZN ZN B1413 O HOH B2028 1555 1555 2.51 LINK ZN ZN B1414 CL CL B1418 1555 1555 2.66 SITE 1 AC1 2 ASP A 26 HOH A2066 SITE 1 AC2 2 HIS A 388 GLY A 393 SITE 1 AC3 4 ASP A 301 ASP A 305 CL A1418 ASP B 277 SITE 1 AC4 2 GLU A 196 LYS A 200 SITE 1 AC5 2 ZN A1415 ASP B 277 SITE 1 AC6 3 ARG B 399 GLU B 400 HOH B2028 SITE 1 AC7 4 ASP A 277 ASP B 301 ASP B 305 CL B1418 SITE 1 AC8 1 GLU B 240 SITE 1 AC9 2 GLU B 196 LYS B 200 SITE 1 BC1 3 HIS B 139 GLU B 141 LYS B 142 SITE 1 BC2 3 ASP A 277 ZN B1414 HOH B2023 CRYST1 81.611 65.405 87.181 90.00 95.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012253 0.000000 0.001132 0.00000 SCALE2 0.000000 0.015289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011519 0.00000