data_2IV4 # _entry.id 2IV4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IV4 PDBE EBI-29040 WWPDB D_1290029040 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1X4Q unspecified 'SOLUTION STRUCTURE OF PWI DOMAIN IN U4/U6 SMALL NUCLEARRIBONUCLEOPROTEIN PRP3(HPRP3)' PDB 2IV5 unspecified 'HPRP-173-195 SOLUTION STRUCTURE' PDB 2IV6 unspecified 'HPRP-173-195-D178N SOLUTION STRUCTURE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IV4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-06-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saviano, G.' 1 'Tancredi, T.' 2 # _citation.id primary _citation.title 'The Conformational Landscape of the Human Prion Protein Alpha 2 Domain: Comparative NMR and Md Studies on Helix-2-Derived Peptides' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ronga, L.' 1 primary 'Palladino, P.' 2 primary 'Tizzano, B.' 3 primary 'Costantini, S.' 4 primary 'Facchiano, A.' 5 primary 'Saviano, G.' 6 primary 'Tancredi, T.' 7 primary 'Ruvo, M.' 8 primary 'Ragone, R.' 9 primary 'Benedetti, E.' 10 primary 'Rossi, F.' 11 # _cell.entry_id 2IV4 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IV4 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'MAJOR PRION PROTEIN' _entity.formula_weight 1745.005 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RESIDUES 180-195' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VNITIKQHTVTTTTKG _entity_poly.pdbx_seq_one_letter_code_can VNITIKQHTVTTTTKG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASN n 1 3 ILE n 1 4 THR n 1 5 ILE n 1 6 LYS n 1 7 GLN n 1 8 HIS n 1 9 THR n 1 10 VAL n 1 11 THR n 1 12 THR n 1 13 THR n 1 14 THR n 1 15 LYS n 1 16 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5QPB4_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q5QPB4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IV4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5QPB4 _struct_ref_seq.db_align_beg 180 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 195 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 180 _struct_ref_seq.pdbx_auth_seq_align_end 195 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 COSY 1 4 1 '15N- HSQC' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents TRIFLUOROETHANOL-D2 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model OTHER _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 2IV4 _pdbx_nmr_refine.method DYANA _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2IV4 _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 30 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DYANA ? P.GUNTERTH 1 'structure solution' NMRVIEW ? ? 2 # _exptl.entry_id 2IV4 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2IV4 _struct.title 'hPrP180-195 structure' _struct.pdbx_descriptor 'MAJOR PRION PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IV4 _struct_keywords.pdbx_keywords 'PRION PROTEIN' _struct_keywords.text 'PRION PROTEIN, ALPHA2-HELIX, HUMAN PRION PROTEIN, SOLUTION STRUCTURE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? THR A 9 ? ASN A 181 THR A 188 1 ? 8 HELX_P HELX_P2 2 THR A 9 ? THR A 14 ? THR A 188 THR A 193 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2IV4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IV4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 180 180 VAL VAL A . n A 1 2 ASN 2 181 181 ASN ASN A . n A 1 3 ILE 3 182 182 ILE ILE A . n A 1 4 THR 4 183 183 THR THR A . n A 1 5 ILE 5 184 184 ILE ILE A . n A 1 6 LYS 6 185 185 LYS LYS A . n A 1 7 GLN 7 186 186 GLN GLN A . n A 1 8 HIS 8 187 187 HIS HIS A . n A 1 9 THR 9 188 188 THR THR A . n A 1 10 VAL 10 189 189 VAL VAL A . n A 1 11 THR 11 190 190 THR THR A . n A 1 12 THR 12 191 191 THR THR A . n A 1 13 THR 13 192 192 THR THR A . n A 1 14 THR 14 193 193 THR THR A . n A 1 15 LYS 15 194 194 LYS LYS A . n A 1 16 GLY 16 195 195 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-28 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 6 O A THR 183 ? ? H A HIS 187 ? ? 1.55 2 10 O A THR 183 ? ? H A HIS 187 ? ? 1.58 3 11 O A THR 188 ? ? H A THR 192 ? ? 1.54 4 15 O A THR 183 ? ? H A HIS 187 ? ? 1.56 5 18 O A ILE 184 ? ? HG1 A THR 188 ? ? 1.44 6 22 O A ILE 184 ? ? HG1 A THR 188 ? ? 1.45 7 26 O A THR 192 ? ? HG1 A THR 193 ? ? 1.56 8 28 O A ILE 184 ? ? HG1 A THR 188 ? ? 1.45 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 THR A 193 ? ? 38.80 49.48 2 3 ASN A 181 ? ? -155.35 28.50 3 3 THR A 193 ? ? 39.17 49.68 4 6 ASN A 181 ? ? -155.52 28.91 5 6 ILE A 184 ? ? -56.95 -70.30 6 6 THR A 193 ? ? 39.77 50.42 7 8 THR A 193 ? ? 39.29 51.86 8 9 ASN A 181 ? ? -155.59 31.69 9 9 THR A 191 ? ? -86.25 45.88 10 9 THR A 192 ? ? -169.01 -40.24 11 10 THR A 193 ? ? 35.47 46.68 12 11 ASN A 181 ? ? -170.79 33.82 13 11 THR A 193 ? ? 39.35 56.88 14 12 ASN A 181 ? ? -154.58 30.05 15 12 THR A 193 ? ? 37.69 49.23 16 13 THR A 191 ? ? -88.49 45.49 17 13 THR A 192 ? ? -170.13 -40.05 18 13 LYS A 194 ? ? -61.82 82.36 19 14 THR A 193 ? ? 37.65 49.74 20 15 ASN A 181 ? ? -173.92 38.06 21 15 ILE A 184 ? ? -49.79 -71.83 22 15 THR A 192 ? ? -102.15 -71.58 23 15 THR A 193 ? ? 176.12 58.75 24 16 ASN A 181 ? ? -172.82 35.70 25 16 THR A 191 ? ? -87.93 45.43 26 16 THR A 192 ? ? -169.67 -40.38 27 16 LYS A 194 ? ? -59.64 100.42 28 17 ASN A 181 ? ? -173.42 36.34 29 17 THR A 191 ? ? -88.69 46.96 30 17 THR A 192 ? ? -171.16 -39.27 31 18 ASN A 181 ? ? -149.62 21.88 32 18 THR A 191 ? ? -86.19 48.31 33 18 THR A 192 ? ? -171.28 -38.66 34 19 THR A 191 ? ? -86.81 46.80 35 19 THR A 192 ? ? -169.93 -39.66 36 20 THR A 191 ? ? -85.50 46.81 37 20 THR A 192 ? ? -169.21 -39.87 38 21 THR A 193 ? ? 37.73 47.19 39 22 ASN A 181 ? ? -175.10 90.80 40 22 ILE A 182 ? ? -154.75 -45.52 41 22 THR A 191 ? ? -87.61 48.66 42 22 THR A 192 ? ? -172.47 -38.15 43 22 LYS A 194 ? ? -54.83 91.76 44 23 ASN A 181 ? ? -175.11 90.84 45 23 ILE A 182 ? ? -154.79 -45.52 46 23 THR A 191 ? ? -91.61 48.19 47 23 THR A 192 ? ? -174.25 -37.44 48 24 ASN A 181 ? ? -143.07 19.45 49 24 THR A 191 ? ? -86.92 46.77 50 24 THR A 192 ? ? -170.31 -39.56 51 24 LYS A 194 ? ? -61.25 95.22 52 25 THR A 191 ? ? -86.98 46.76 53 25 THR A 192 ? ? -170.27 -39.49 54 26 ASN A 181 ? ? -174.85 35.82 55 26 THR A 191 ? ? -97.35 44.81 56 26 THR A 192 ? ? -173.82 -37.90 57 27 ASN A 181 ? ? -156.84 28.45 58 27 ILE A 182 ? ? -71.64 -85.68 59 27 THR A 193 ? ? 37.65 49.27 60 28 THR A 191 ? ? -87.74 47.27 61 28 THR A 192 ? ? -170.77 -39.23 62 29 THR A 191 ? ? -85.22 45.91 63 29 THR A 192 ? ? -163.87 -41.21 64 30 THR A 191 ? ? -84.76 46.45 65 30 THR A 192 ? ? -164.25 -41.09 #