data_2IVH # _entry.id 2IVH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IVH pdb_00002ivh 10.2210/pdb2ivh/pdb PDBE EBI-29070 ? ? WWPDB D_1290029070 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1M08 unspecified 'CRYSTAL STRUCTURE OF THE UNBOUND NUCLEASE DOMAIN OF COLE7' PDB 1MZ8 unspecified 'CRYSTAL STRUCTURES OF THE NUCLEASE DOMAIN OF COLE7/IM7 INCOMPLEX WITH A PHOSPHATE ION AND A ZINC ION' PDB 1PT3 unspecified 'CRYSTAL STRUCTURES OF NUCLEASE-COLE7 COMPLEXED WITH OCTAMERDNA' PDB 1UJZ unspecified ;CRYSTAL STRUCTURE OF THE E7_C/IM7_C COMPLEX; ACOMPUTATIONALLY DESIGNED INTERFACE BETWEEN THE COLICIN E7DNASE AND THE IM7 IMMUNITY PROTEIN ; PDB 1ZNS unspecified 'CRYSTAL STRUCTURE OF N-COLE7/12-BP DNA/ ZN COMPLEX' PDB 1ZNV unspecified 'HOW A HIS-METAL FINGER ENDONUCLEASE COLE7 BINDS AND CLEAVESDNA WITH A TRANSITION METAL ION COFACTOR' PDB 2AXC unspecified 'CRYSTAL STRUCTURE OF COLE7 TRANSLOCATION DOMAIN' PDB 7CEI unspecified 'THE ENDONUCLEASE DOMAIN OF COLICIN E7 IN COMPLEX WITH ITSINHIBITOR IM7 PROTEIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IVH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-06-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, Y.T.' 1 'Yang, W.J.' 2 'Li, C.L.' 3 'Doudeva, L.G.' 4 'Yuan, H.S.' 5 # _citation.id primary _citation.title 'Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 584 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17175542 _citation.pdbx_database_id_DOI 10.1093/NAR/GKL621 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, Y.T.' 1 ? primary 'Yang, W.J.' 2 ? primary 'Li, C.L.' 3 ? primary 'Doudeva, L.G.' 4 ? primary 'Yuan, H.S.' 5 ? # _cell.entry_id 2IVH _cell.length_a 106.800 _cell.length_b 106.800 _cell.length_c 60.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IVH _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man COLCIN-E7 14651.606 1 3.1.-.- YES 'NUCLEASE DOMAIN, RESIDUES 449-576' ? 2 polymer syn ;5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3' ; 5515.591 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 87 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPK TRTQDVSGKRTSFELHQEKPISQNGGVYDMDNISVVTPKRHIDIHRGK ; ;KPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPK TRTQDVSGKRTSFELHQEKPISQNGGVYDMDNISVVTPKRHIDIHRGK ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DA)(DT)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DC)' GGAATTCGATCGAATTCC B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 PRO n 1 3 GLY n 1 4 LYS n 1 5 ALA n 1 6 THR n 1 7 GLY n 1 8 LYS n 1 9 GLY n 1 10 LYS n 1 11 PRO n 1 12 VAL n 1 13 ASN n 1 14 ASN n 1 15 LYS n 1 16 TRP n 1 17 LEU n 1 18 ASN n 1 19 ASN n 1 20 ALA n 1 21 GLY n 1 22 LYS n 1 23 ASP n 1 24 LEU n 1 25 GLY n 1 26 SER n 1 27 PRO n 1 28 VAL n 1 29 PRO n 1 30 ASP n 1 31 ARG n 1 32 ILE n 1 33 ALA n 1 34 ASN n 1 35 LYS n 1 36 LEU n 1 37 ARG n 1 38 ASP n 1 39 LYS n 1 40 GLU n 1 41 PHE n 1 42 LYS n 1 43 SER n 1 44 PHE n 1 45 ASP n 1 46 ASP n 1 47 PHE n 1 48 ARG n 1 49 LYS n 1 50 LYS n 1 51 PHE n 1 52 TRP n 1 53 GLU n 1 54 GLU n 1 55 VAL n 1 56 SER n 1 57 LYS n 1 58 ASP n 1 59 PRO n 1 60 GLU n 1 61 LEU n 1 62 SER n 1 63 LYS n 1 64 GLN n 1 65 PHE n 1 66 SER n 1 67 ARG n 1 68 ASN n 1 69 ASN n 1 70 ASN n 1 71 ASP n 1 72 ARG n 1 73 MET n 1 74 LYS n 1 75 VAL n 1 76 GLY n 1 77 LYS n 1 78 ALA n 1 79 PRO n 1 80 LYS n 1 81 THR n 1 82 ARG n 1 83 THR n 1 84 GLN n 1 85 ASP n 1 86 VAL n 1 87 SER n 1 88 GLY n 1 89 LYS n 1 90 ARG n 1 91 THR n 1 92 SER n 1 93 PHE n 1 94 GLU n 1 95 LEU n 1 96 HIS n 1 97 GLN n 1 98 GLU n 1 99 LYS n 1 100 PRO n 1 101 ILE n 1 102 SER n 1 103 GLN n 1 104 ASN n 1 105 GLY n 1 106 GLY n 1 107 VAL n 1 108 TYR n 1 109 ASP n 1 110 MET n 1 111 ASP n 1 112 ASN n 1 113 ILE n 1 114 SER n 1 115 VAL n 1 116 VAL n 1 117 THR n 1 118 PRO n 1 119 LYS n 1 120 ARG n 1 121 HIS n 1 122 ILE n 1 123 ASP n 1 124 ILE n 1 125 HIS n 1 126 ARG n 1 127 GLY n 1 128 LYS n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DC n 2 12 DG n 2 13 DA n 2 14 DA n 2 15 DT n 2 16 DT n 2 17 DC n 2 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain W3110 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PQE70 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ESCHERICHIA COLI' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP CEA7_ECOLI 1 ? ? Q47112 ? 2 PDB 2IVH 2 ? ? 2IVH ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IVH A 1 ? 128 ? Q47112 449 ? 576 ? 449 576 2 2 2IVH B 1 ? 18 ? 2IVH 1 ? 18 ? 1 18 3 2 2IVH C 1 ? 18 ? 2IVH 19 ? 36 ? 19 36 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2IVH _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 97 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q47112 _struct_ref_seq_dif.db_mon_id HIS _struct_ref_seq_dif.pdbx_seq_db_seq_num 545 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 545 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2IVH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_percent_sol 64.8 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.80 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP VAPOR DIFFUSION METHOD BY MIXING 1 MICRO L COMPLEX SOLUTION AND 1 MICRO L RESERVOIR SOLUTION CONSISTING OF 40 % MPD, 0.4 M AMMONIUM FORMATE AND 0.1 M ACETATE BUFFER (PH4.8) AT ROOM TEMPERATURE., pH 4.80 ; # _diffrn.id 1 _diffrn.ambient_temp 113.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-12-14 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength 1.000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2IVH _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 9047 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.7000 _reflns.B_iso_Wilson_estimate 36.2 _reflns.pdbx_redundancy 10.740 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.36000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.050 _reflns_shell.pdbx_redundancy 11.10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2IVH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8744 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 106441.89 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.76 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.265 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.5 _refine.ls_number_reflns_R_free 919 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.1 _refine.aniso_B[1][1] -4.91 _refine.aniso_B[2][2] -4.91 _refine.aniso_B[3][3] 9.82 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.307386 _refine.solvent_model_param_bsol 31.0364 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PT3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2IVH _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free 0.50 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1006 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1826 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 47.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.17 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.37 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 7.52 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 8.17 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.11 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1225 _refine_ls_shell.R_factor_R_work 0.322 _refine_ls_shell.percent_reflns_obs 93.7 _refine_ls_shell.R_factor_R_free 0.408 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 137 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA-VVN.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _struct.entry_id 2IVH _struct.title 'Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IVH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'BACTERIOCIN, ENDONUCLEASE, ANTIMICROBIAL, METAL-BINDING, HYDROLASE-DNA COMPLEX, ZINC, PLASMID, NUCLEASE, HYDROLASE, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 29 ? ARG A 37 ? PRO A 477 ARG A 485 1 ? 9 HELX_P HELX_P2 2 SER A 43 ? ASP A 58 ? SER A 491 ASP A 506 1 ? 16 HELX_P HELX_P3 3 ASP A 58 ? LYS A 63 ? ASP A 506 LYS A 511 1 ? 6 HELX_P HELX_P4 4 SER A 66 ? LYS A 74 ? SER A 514 LYS A 522 1 ? 9 HELX_P HELX_P5 5 ARG A 82 ? VAL A 86 ? ARG A 530 VAL A 534 5 ? 5 HELX_P HELX_P6 6 THR A 117 ? HIS A 125 ? THR A 565 HIS A 573 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 96 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 544 A ZN 1577 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc2 metalc ? ? A HIS 121 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 569 A ZN 1577 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc3 metalc ? ? A HIS 125 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 573 A ZN 1577 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 B DC 11 OP1 ? ? A ZN 1577 B DC 11 1_555 ? ? ? ? ? ? ? 1.769 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 18 N3 ? ? B DG 1 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? B DG 1 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 18 N4 ? ? B DG 1 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 17 N3 ? ? B DG 2 C DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 17 O2 ? ? B DG 2 C DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 17 N4 ? ? B DG 2 C DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 16 N3 ? ? B DA 3 C DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 16 O4 ? ? B DA 3 C DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 15 N3 ? ? B DA 4 C DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 15 O4 ? ? B DA 4 C DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 5 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 5 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 13 N1 ? ? B DT 6 C DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 13 N6 ? ? B DT 6 C DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 7 C DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 7 C DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 7 C DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 8 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 8 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 8 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 9 C DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 9 C DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 10 C DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 10 C DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 12 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 12 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 12 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 13 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 13 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 14 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 14 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DT 15 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 15 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DT 15 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 15 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DT 16 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 16 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DT 16 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 16 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 17 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 18 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 18 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 18 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 40 ? PHE A 41 ? GLU A 488 PHE A 489 AA 2 GLY A 3 ? THR A 6 ? GLY A 451 THR A 454 AA 3 TYR A 108 ? ASP A 109 ? TYR A 556 ASP A 557 AB 1 SER A 26 ? PRO A 27 ? SER A 474 PRO A 475 AB 2 ILE A 113 ? VAL A 116 ? ILE A 561 VAL A 564 AB 3 GLU A 94 ? GLN A 97 ? GLU A 542 GLN A 545 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 41 ? N PHE A 489 O GLY A 3 ? O GLY A 451 AA 2 3 N THR A 6 ? N THR A 454 O TYR A 108 ? O TYR A 556 AB 1 2 N SER A 26 ? N SER A 474 O VAL A 115 ? O VAL A 563 AB 2 3 N VAL A 116 ? N VAL A 564 O GLU A 94 ? O GLU A 542 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A1577' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 96 ? HIS A 544 . ? 1_555 ? 2 AC1 5 HIS A 121 ? HIS A 569 . ? 1_555 ? 3 AC1 5 HIS A 125 ? HIS A 573 . ? 1_555 ? 4 AC1 5 DT B 10 ? DT B 10 . ? 1_555 ? 5 AC1 5 DC B 11 ? DC B 11 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IVH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IVH _atom_sites.fract_transf_matrix[1][1] 0.009363 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009363 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016611 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 449 449 LYS LYS A . n A 1 2 PRO 2 450 450 PRO PRO A . n A 1 3 GLY 3 451 451 GLY GLY A . n A 1 4 LYS 4 452 452 LYS LYS A . n A 1 5 ALA 5 453 453 ALA ALA A . n A 1 6 THR 6 454 454 THR THR A . n A 1 7 GLY 7 455 455 GLY GLY A . n A 1 8 LYS 8 456 456 LYS LYS A . n A 1 9 GLY 9 457 457 GLY GLY A . n A 1 10 LYS 10 458 458 LYS LYS A . n A 1 11 PRO 11 459 459 PRO PRO A . n A 1 12 VAL 12 460 460 VAL VAL A . n A 1 13 ASN 13 461 461 ASN ASN A . n A 1 14 ASN 14 462 462 ASN ASN A . n A 1 15 LYS 15 463 463 LYS LYS A . n A 1 16 TRP 16 464 464 TRP TRP A . n A 1 17 LEU 17 465 465 LEU LEU A . n A 1 18 ASN 18 466 466 ASN ASN A . n A 1 19 ASN 19 467 467 ASN ASN A . n A 1 20 ALA 20 468 468 ALA ALA A . n A 1 21 GLY 21 469 469 GLY GLY A . n A 1 22 LYS 22 470 470 LYS LYS A . n A 1 23 ASP 23 471 471 ASP ASP A . n A 1 24 LEU 24 472 472 LEU LEU A . n A 1 25 GLY 25 473 473 GLY GLY A . n A 1 26 SER 26 474 474 SER SER A . n A 1 27 PRO 27 475 475 PRO PRO A . n A 1 28 VAL 28 476 476 VAL VAL A . n A 1 29 PRO 29 477 477 PRO PRO A . n A 1 30 ASP 30 478 478 ASP ASP A . n A 1 31 ARG 31 479 479 ARG ARG A . n A 1 32 ILE 32 480 480 ILE ILE A . n A 1 33 ALA 33 481 481 ALA ALA A . n A 1 34 ASN 34 482 482 ASN ASN A . n A 1 35 LYS 35 483 483 LYS LYS A . n A 1 36 LEU 36 484 484 LEU LEU A . n A 1 37 ARG 37 485 485 ARG ARG A . n A 1 38 ASP 38 486 486 ASP ASP A . n A 1 39 LYS 39 487 487 LYS LYS A . n A 1 40 GLU 40 488 488 GLU GLU A . n A 1 41 PHE 41 489 489 PHE PHE A . n A 1 42 LYS 42 490 490 LYS LYS A . n A 1 43 SER 43 491 491 SER SER A . n A 1 44 PHE 44 492 492 PHE PHE A . n A 1 45 ASP 45 493 493 ASP ASP A . n A 1 46 ASP 46 494 494 ASP ASP A . n A 1 47 PHE 47 495 495 PHE PHE A . n A 1 48 ARG 48 496 496 ARG ARG A . n A 1 49 LYS 49 497 497 LYS LYS A . n A 1 50 LYS 50 498 498 LYS LYS A . n A 1 51 PHE 51 499 499 PHE PHE A . n A 1 52 TRP 52 500 500 TRP TRP A . n A 1 53 GLU 53 501 501 GLU GLU A . n A 1 54 GLU 54 502 502 GLU GLU A . n A 1 55 VAL 55 503 503 VAL VAL A . n A 1 56 SER 56 504 504 SER SER A . n A 1 57 LYS 57 505 505 LYS LYS A . n A 1 58 ASP 58 506 506 ASP ASP A . n A 1 59 PRO 59 507 507 PRO PRO A . n A 1 60 GLU 60 508 508 GLU GLU A . n A 1 61 LEU 61 509 509 LEU LEU A . n A 1 62 SER 62 510 510 SER SER A . n A 1 63 LYS 63 511 511 LYS LYS A . n A 1 64 GLN 64 512 512 GLN GLN A . n A 1 65 PHE 65 513 513 PHE PHE A . n A 1 66 SER 66 514 514 SER SER A . n A 1 67 ARG 67 515 515 ARG ARG A . n A 1 68 ASN 68 516 516 ASN ASN A . n A 1 69 ASN 69 517 517 ASN ASN A . n A 1 70 ASN 70 518 518 ASN ASN A . n A 1 71 ASP 71 519 519 ASP ASP A . n A 1 72 ARG 72 520 520 ARG ARG A . n A 1 73 MET 73 521 521 MET MET A . n A 1 74 LYS 74 522 522 LYS LYS A . n A 1 75 VAL 75 523 523 VAL VAL A . n A 1 76 GLY 76 524 524 GLY GLY A . n A 1 77 LYS 77 525 525 LYS LYS A . n A 1 78 ALA 78 526 526 ALA ALA A . n A 1 79 PRO 79 527 527 PRO PRO A . n A 1 80 LYS 80 528 528 LYS LYS A . n A 1 81 THR 81 529 529 THR THR A . n A 1 82 ARG 82 530 530 ARG ARG A . n A 1 83 THR 83 531 531 THR THR A . n A 1 84 GLN 84 532 532 GLN GLN A . n A 1 85 ASP 85 533 533 ASP ASP A . n A 1 86 VAL 86 534 534 VAL VAL A . n A 1 87 SER 87 535 535 SER SER A . n A 1 88 GLY 88 536 536 GLY GLY A . n A 1 89 LYS 89 537 537 LYS LYS A . n A 1 90 ARG 90 538 538 ARG ARG A . n A 1 91 THR 91 539 539 THR THR A . n A 1 92 SER 92 540 540 SER SER A . n A 1 93 PHE 93 541 541 PHE PHE A . n A 1 94 GLU 94 542 542 GLU GLU A . n A 1 95 LEU 95 543 543 LEU LEU A . n A 1 96 HIS 96 544 544 HIS HIS A . n A 1 97 GLN 97 545 545 GLN GLN A . n A 1 98 GLU 98 546 546 GLU GLU A . n A 1 99 LYS 99 547 547 LYS LYS A . n A 1 100 PRO 100 548 548 PRO PRO A . n A 1 101 ILE 101 549 549 ILE ILE A . n A 1 102 SER 102 550 550 SER SER A . n A 1 103 GLN 103 551 ? ? ? A . n A 1 104 ASN 104 552 ? ? ? A . n A 1 105 GLY 105 553 ? ? ? A . n A 1 106 GLY 106 554 ? ? ? A . n A 1 107 VAL 107 555 555 VAL VAL A . n A 1 108 TYR 108 556 556 TYR TYR A . n A 1 109 ASP 109 557 557 ASP ASP A . n A 1 110 MET 110 558 558 MET MET A . n A 1 111 ASP 111 559 559 ASP ASP A . n A 1 112 ASN 112 560 560 ASN ASN A . n A 1 113 ILE 113 561 561 ILE ILE A . n A 1 114 SER 114 562 562 SER SER A . n A 1 115 VAL 115 563 563 VAL VAL A . n A 1 116 VAL 116 564 564 VAL VAL A . n A 1 117 THR 117 565 565 THR THR A . n A 1 118 PRO 118 566 566 PRO PRO A . n A 1 119 LYS 119 567 567 LYS LYS A . n A 1 120 ARG 120 568 568 ARG ARG A . n A 1 121 HIS 121 569 569 HIS HIS A . n A 1 122 ILE 122 570 570 ILE ILE A . n A 1 123 ASP 123 571 571 ASP ASP A . n A 1 124 ILE 124 572 572 ILE ILE A . n A 1 125 HIS 125 573 573 HIS HIS A . n A 1 126 ARG 126 574 574 ARG ARG A . n A 1 127 GLY 127 575 575 GLY GLY A . n A 1 128 LYS 128 576 576 LYS LYS A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DA 13 13 13 DA DA B . n B 2 14 DA 14 14 14 DA DA B . n B 2 15 DT 15 15 15 DT DT B . n B 2 16 DT 16 16 16 DT DT B . n B 2 17 DC 17 17 17 DC DC B . n B 2 18 DC 18 18 18 DC DC B . n C 2 1 DG 1 19 19 DG DG C . n C 2 2 DG 2 20 20 DG DG C . n C 2 3 DA 3 21 21 DA DA C . n C 2 4 DA 4 22 22 DA DA C . n C 2 5 DT 5 23 23 DT DT C . n C 2 6 DT 6 24 24 DT DT C . n C 2 7 DC 7 25 25 DC DC C . n C 2 8 DG 8 26 26 DG DG C . n C 2 9 DA 9 27 27 DA DA C . n C 2 10 DT 10 28 28 DT DT C . n C 2 11 DC 11 29 29 DC DC C . n C 2 12 DG 12 30 30 DG DG C . n C 2 13 DA 13 31 31 DA DA C . n C 2 14 DA 14 32 32 DA DA C . n C 2 15 DT 15 33 33 DT DT C . n C 2 16 DT 16 34 34 DT DT C . n C 2 17 DC 17 35 35 DC DC C . n C 2 18 DC 18 36 36 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 1577 1577 ZN ZN A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . F 4 HOH 8 2008 2008 HOH HOH B . F 4 HOH 9 2009 2009 HOH HOH B . G 4 HOH 1 2001 2001 HOH HOH C . G 4 HOH 2 2002 2002 HOH HOH C . G 4 HOH 3 2003 2003 HOH HOH C . G 4 HOH 4 2004 2004 HOH HOH C . G 4 HOH 5 2005 2005 HOH HOH C . G 4 HOH 6 2006 2006 HOH HOH C . G 4 HOH 7 2007 2007 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 96 ? A HIS 544 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 NE2 ? A HIS 121 ? A HIS 569 ? 1_555 118.8 ? 2 ND1 ? A HIS 96 ? A HIS 544 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 NE2 ? A HIS 125 ? A HIS 573 ? 1_555 118.4 ? 3 NE2 ? A HIS 121 ? A HIS 569 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 NE2 ? A HIS 125 ? A HIS 573 ? 1_555 98.2 ? 4 ND1 ? A HIS 96 ? A HIS 544 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 OP1 ? B DC 11 ? B DC 11 ? 1_555 106.9 ? 5 NE2 ? A HIS 121 ? A HIS 569 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 OP1 ? B DC 11 ? B DC 11 ? 1_555 99.7 ? 6 NE2 ? A HIS 125 ? A HIS 573 ? 1_555 ZN ? D ZN . ? A ZN 1577 ? 1_555 OP1 ? B DC 11 ? B DC 11 ? 1_555 113.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-02 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_seq_map_depositor_info 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_database_status 11 5 'Structure model' pdbx_initial_refinement_model 12 5 'Structure model' pdbx_struct_conn_angle 13 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_pdbx_database_status.status_code_sf' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 EPMR phasing . ? 4 # _pdbx_entry_details.entry_id 2IVH _pdbx_entry_details.compound_details ;THIS PLASMID-CODED BACTERICIDAL PROTEIN IS AN ENDONUCLEASE ACTIVE ON BOTH SINGLE- AND DOUBLE-STRANDED DNA BUT WITH UNDEFINED SPECIFICITY. ENGINEERED RESIDUE IN CHAIN A, HIS 545 TO GLN ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 461 ? ? -96.81 -141.03 2 1 ASN A 467 ? ? -95.53 33.75 3 1 ASP A 471 ? ? 62.13 -124.63 4 1 ASP A 486 ? ? 70.34 -1.76 5 1 PRO A 548 ? ? -47.27 160.90 6 1 HIS A 573 ? ? -76.03 23.21 7 1 ARG A 574 ? ? -145.90 26.48 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT B 10 ? ? 0.087 'SIDE CHAIN' 2 1 DC B 11 ? ? 0.074 'SIDE CHAIN' 3 1 DC C 36 ? ? 0.066 'SIDE CHAIN' # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id C _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2001 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.22 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 551 ? A GLN 103 2 1 Y 1 A ASN 552 ? A ASN 104 3 1 Y 1 A GLY 553 ? A GLY 105 4 1 Y 1 A GLY 554 ? A GLY 106 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 ZN ZN ZN N N 520 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2IVH 'double helix' 2IVH 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 18 1_555 0.029 -0.131 0.318 1.461 -1.552 -10.173 1 B_DG1:DC36_C B 1 ? C 36 ? 19 1 1 B DG 2 1_555 C DC 17 1_555 0.754 -0.170 -0.056 5.822 -5.536 -4.623 2 B_DG2:DC35_C B 2 ? C 35 ? 19 1 1 B DA 3 1_555 C DT 16 1_555 -0.222 0.160 0.006 -0.388 -15.977 -1.357 3 B_DA3:DT34_C B 3 ? C 34 ? 20 1 1 B DA 4 1_555 C DT 15 1_555 -0.304 0.018 0.018 -4.271 -23.475 2.157 4 B_DA4:DT33_C B 4 ? C 33 ? 20 1 1 B DT 5 1_555 C DA 14 1_555 -0.013 0.236 0.359 -5.236 -20.065 -1.262 5 B_DT5:DA32_C B 5 ? C 32 ? 20 1 1 B DT 6 1_555 C DA 13 1_555 0.284 -0.225 0.172 -11.128 -22.682 0.649 6 B_DT6:DA31_C B 6 ? C 31 ? 20 1 1 B DC 7 1_555 C DG 12 1_555 0.820 -0.505 -0.089 -11.804 -5.293 -0.621 7 B_DC7:DG30_C B 7 ? C 30 ? 19 1 1 B DG 8 1_555 C DC 11 1_555 -0.065 -0.204 -0.258 -3.999 -5.365 -3.181 8 B_DG8:DC29_C B 8 ? C 29 ? 19 1 1 B DA 9 1_555 C DT 10 1_555 0.286 -0.156 -0.651 -5.804 -10.220 -3.031 9 B_DA9:DT28_C B 9 ? C 28 ? 20 1 1 B DT 10 1_555 C DA 9 1_555 -0.559 -0.234 -0.349 4.888 -12.369 7.148 10 B_DT10:DA27_C B 10 ? C 27 ? 20 1 1 B DC 11 1_555 C DG 8 1_555 0.171 -0.201 0.171 -9.972 -8.041 4.953 11 B_DC11:DG26_C B 11 ? C 26 ? 19 1 1 B DG 12 1_555 C DC 7 1_555 -0.567 -0.254 -0.159 0.563 -2.921 -1.261 12 B_DG12:DC25_C B 12 ? C 25 ? 19 1 1 B DA 13 1_555 C DT 6 1_555 0.698 -0.095 -0.279 -3.810 -6.992 0.007 13 B_DA13:DT24_C B 13 ? C 24 ? 20 1 1 B DA 14 1_555 C DT 5 1_555 0.302 -0.226 -0.087 3.025 -16.607 -3.789 14 B_DA14:DT23_C B 14 ? C 23 ? 20 1 1 B DT 15 1_555 C DA 4 1_555 0.191 0.078 0.174 -0.875 -15.866 -2.558 15 B_DT15:DA22_C B 15 ? C 22 ? 20 1 1 B DT 16 1_555 C DA 3 1_555 0.297 -0.013 0.021 -3.032 -17.699 -1.193 16 B_DT16:DA21_C B 16 ? C 21 ? 20 1 1 B DC 17 1_555 C DG 2 1_555 -0.106 -0.098 0.042 -2.761 -9.288 -4.397 17 B_DC17:DG20_C B 17 ? C 20 ? 19 1 1 B DC 18 1_555 C DG 1 1_555 -0.609 -0.063 -0.031 3.097 1.243 -11.837 18 B_DC18:DG19_C B 18 ? C 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 18 1_555 B DG 2 1_555 C DC 17 1_555 0.287 -0.614 3.223 2.161 5.961 34.977 -1.854 -0.164 3.092 9.819 -3.559 35.530 1 BB_DG1DG2:DC35DC36_CC B 1 ? C 36 ? B 2 ? C 35 ? 1 B DG 2 1_555 C DC 17 1_555 B DA 3 1_555 C DT 16 1_555 -0.341 -0.200 3.243 -2.314 1.319 34.249 -0.543 0.217 3.249 2.235 3.922 34.350 2 BB_DG2DA3:DT34DC35_CC B 2 ? C 35 ? B 3 ? C 34 ? 1 B DA 3 1_555 C DT 16 1_555 B DA 4 1_555 C DT 15 1_555 0.018 -0.435 3.361 1.398 -3.525 38.298 -0.207 0.152 3.385 -5.357 -2.124 38.478 3 BB_DA3DA4:DT33DT34_CC B 3 ? C 34 ? B 4 ? C 33 ? 1 B DA 4 1_555 C DT 15 1_555 B DT 5 1_555 C DA 14 1_555 -0.304 -0.616 3.240 -2.680 -1.418 33.118 -0.839 0.085 3.277 -2.481 4.689 33.252 4 BB_DA4DT5:DA32DT33_CC B 4 ? C 33 ? B 5 ? C 32 ? 1 B DT 5 1_555 C DA 14 1_555 B DT 6 1_555 C DA 13 1_555 -0.104 -0.165 3.275 0.651 -4.242 41.193 0.222 0.217 3.273 -6.009 -0.922 41.406 5 BB_DT5DT6:DA31DA32_CC B 5 ? C 32 ? B 6 ? C 31 ? 1 B DT 6 1_555 C DA 13 1_555 B DC 7 1_555 C DG 12 1_555 0.937 0.921 3.395 2.493 -0.577 40.150 1.407 -1.068 3.431 -0.839 -3.627 40.228 6 BB_DT6DC7:DG30DA31_CC B 6 ? C 31 ? B 7 ? C 30 ? 1 B DC 7 1_555 C DG 12 1_555 B DG 8 1_555 C DC 11 1_555 -0.775 0.944 3.173 -1.172 10.262 23.936 -0.819 1.386 3.322 23.398 2.671 26.040 7 BB_DC7DG8:DC29DG30_CC B 7 ? C 30 ? B 8 ? C 29 ? 1 B DG 8 1_555 C DC 11 1_555 B DA 9 1_555 C DT 10 1_555 -0.430 0.075 3.401 -0.013 11.580 33.627 -1.650 0.704 3.250 19.317 0.022 35.511 8 BB_DG8DA9:DT28DC29_CC B 8 ? C 29 ? B 9 ? C 28 ? 1 B DA 9 1_555 C DT 10 1_555 B DT 10 1_555 C DA 9 1_555 1.089 -0.638 3.002 0.576 7.205 25.594 -3.085 -2.233 2.746 15.866 -1.269 26.578 9 BB_DA9DT10:DA27DT28_CC B 9 ? C 28 ? B 10 ? C 27 ? 1 B DT 10 1_555 C DA 9 1_555 B DC 11 1_555 C DG 8 1_555 1.012 -1.035 3.569 0.424 7.317 34.484 -2.865 -1.604 3.299 12.173 -0.705 35.232 10 BB_DT10DC11:DG26DA27_CC B 10 ? C 27 ? B 11 ? C 26 ? 1 B DC 11 1_555 C DG 8 1_555 B DG 12 1_555 C DC 7 1_555 -0.537 -0.947 3.084 6.635 9.901 27.154 -3.690 2.281 2.404 19.916 -13.345 29.609 11 BB_DC11DG12:DC25DG26_CC B 11 ? C 26 ? B 12 ? C 25 ? 1 B DG 12 1_555 C DC 7 1_555 B DA 13 1_555 C DT 6 1_555 0.547 -0.910 3.383 3.540 2.261 34.242 -1.897 -0.355 3.356 3.822 -5.985 34.491 12 BB_DG12DA13:DT24DC25_CC B 12 ? C 25 ? B 13 ? C 24 ? 1 B DA 13 1_555 C DT 6 1_555 B DA 14 1_555 C DT 5 1_555 -0.677 -0.463 3.107 -0.113 -4.046 35.461 -0.195 1.089 3.141 -6.616 0.186 35.684 13 BB_DA13DA14:DT23DT24_CC B 13 ? C 24 ? B 14 ? C 23 ? 1 B DA 14 1_555 C DT 5 1_555 B DT 15 1_555 C DA 4 1_555 0.071 -0.773 3.300 -1.288 -6.756 36.757 -0.289 -0.285 3.380 -10.600 2.020 37.373 14 BB_DA14DT15:DA22DT23_CC B 14 ? C 23 ? B 15 ? C 22 ? 1 B DT 15 1_555 C DA 4 1_555 B DT 16 1_555 C DA 3 1_555 0.245 -0.237 3.160 3.101 0.613 37.709 -0.441 0.009 3.166 0.947 -4.788 37.837 15 BB_DT15DT16:DA21DA22_CC B 15 ? C 22 ? B 16 ? C 21 ? 1 B DT 16 1_555 C DA 3 1_555 B DC 17 1_555 C DG 2 1_555 -0.066 -0.336 3.207 -0.087 5.867 31.024 -1.676 0.106 3.093 10.847 0.161 31.561 16 BB_DT16DC17:DG20DA21_CC B 16 ? C 21 ? B 17 ? C 20 ? 1 B DC 17 1_555 C DG 2 1_555 B DC 18 1_555 C DG 1 1_555 -0.447 -0.022 3.228 -0.083 10.260 29.855 -1.927 0.808 3.055 19.214 0.155 31.531 17 BB_DC17DC18:DG19DG20_CC B 17 ? C 20 ? B 18 ? C 19 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PT3 _pdbx_initial_refinement_model.details 'PDB ENTRY 1PT3' #