HEADER LIPOPROTEIN 20-JUN-06 2IVW TITLE THE SOLUTION STRUCTURE OF A DOMAIN FROM THE NEISSERIA MENINGITIDIS TITLE 2 PILP PILOT PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILP PILOT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FOLDED DOMAIN, RESIDUES 69-181; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122587; SOURCE 4 STRAIN: Z2491; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET101/D-TOPO KEYWDS LIPOPROTEIN, PILUS BIOGENESIS, NEISSERIA MENINGITIDIS, SECRETIN, KEYWDS 2 PILOT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.P.GOLOVANOV,S.BALASINGHAM,C.TZITZILONIS,B.T.GOULT,L.-Y.LIAN, AUTHOR 2 H.HOMBERSET,T.TONJUM,J.P.DERRICK REVDAT 4 15-MAY-24 2IVW 1 REMARK REVDAT 3 09-MAY-18 2IVW 1 JRNL REMARK REVDAT 2 24-FEB-09 2IVW 1 VERSN REVDAT 1 13-FEB-07 2IVW 0 JRNL AUTH A.P.GOLOVANOV,S.BALASINGHAM,C.TZITZILONIS,B.T.GOULT, JRNL AUTH 2 L.Y.LIAN,H.HOMBERSET,T.TONJUM,J.P.DERRICK JRNL TITL THE SOLUTION STRUCTURE OF A DOMAIN FROM THE NEISSERIA JRNL TITL 2 MENINGITIDIS LIPOPROTEIN PILP REVEALS A NEW BETA-SANDWICH JRNL TITL 3 FOLD. JRNL REF J. MOL. BIOL. V. 364 186 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17007878 JRNL DOI 10.1016/J.JMB.2006.08.078 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. THE STRUCTURE OF PILP FRAGMENT 69-181 IS REMARK 3 PRESENTED. THE LONGER PROTEIN CONSTRUCT (RESIDUES 20-181) HAS REMARK 3 BEEN STUDIED BY NMR WHICH REVEALED THAT N-TERMINAL PART OF REMARK 3 POLYPEPTIDE CHAIN IS FLEXIBLE AND UNFOLDED. REMARK 4 REMARK 4 2IVW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029173. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O, 20MM PHOSPHATE REMARK 210 BUFFER, 1MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED NOESY-HSQC; 13C- REMARK 210 EDITED NOESY-HSQC; HOMONUCLEAR REMARK 210 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : CYANA2.1 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 3D AND HOMONUCLEAR 2D REMARK 210 NMR SPECTROSCOPY ON (13C,15N), (15N)- LABELED AND UNLABELLED REMARK 210 PILP. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 78 -170.90 -69.74 REMARK 500 1 LYS A 84 -72.59 -95.72 REMARK 500 1 VAL A 122 108.48 -41.14 REMARK 500 1 GLN A 128 -74.90 -100.65 REMARK 500 1 ASN A 129 -90.45 -55.76 REMARK 500 1 THR A 170 56.88 -110.91 REMARK 500 1 PRO A 176 84.80 -69.83 REMARK 500 2 VAL A 122 109.68 -42.67 REMARK 500 2 GLN A 128 -74.13 -102.58 REMARK 500 2 ASN A 129 -90.45 -55.65 REMARK 500 2 ASN A 164 48.29 -91.30 REMARK 500 2 SER A 166 86.77 61.67 REMARK 500 2 ASP A 167 23.48 -150.63 REMARK 500 2 THR A 170 66.17 -109.53 REMARK 500 3 LYS A 72 108.28 -163.91 REMARK 500 3 PRO A 78 -171.15 -69.72 REMARK 500 3 GLU A 85 166.46 -49.61 REMARK 500 3 SER A 103 69.85 -119.31 REMARK 500 3 GLN A 105 32.66 -143.50 REMARK 500 3 VAL A 122 109.11 -42.21 REMARK 500 3 GLN A 128 -72.30 -105.66 REMARK 500 3 ASN A 129 -90.45 -56.16 REMARK 500 3 GLU A 134 -58.71 -121.00 REMARK 500 3 ASP A 167 43.98 -102.47 REMARK 500 3 GLN A 172 -60.83 -99.37 REMARK 500 3 ALA A 175 71.66 54.31 REMARK 500 4 LYS A 84 -69.65 -131.81 REMARK 500 4 GLN A 105 32.16 -142.99 REMARK 500 4 VAL A 122 109.00 -41.10 REMARK 500 4 GLN A 128 -68.92 -104.40 REMARK 500 4 ASN A 129 -91.53 -58.35 REMARK 500 4 GLU A 134 -57.49 -123.46 REMARK 500 4 LYS A 168 176.19 -56.61 REMARK 500 5 PRO A 78 -176.17 -69.75 REMARK 500 5 ILE A 83 166.18 -48.71 REMARK 500 5 LYS A 84 -74.09 -96.43 REMARK 500 5 SER A 103 69.51 -150.59 REMARK 500 5 VAL A 122 109.61 -42.12 REMARK 500 5 GLN A 128 -75.25 -97.72 REMARK 500 5 ASN A 129 -91.59 -54.61 REMARK 500 5 THR A 170 68.90 -116.73 REMARK 500 5 ALA A 178 149.46 -170.34 REMARK 500 6 LYS A 72 66.33 -107.39 REMARK 500 6 LYS A 84 -69.04 -129.51 REMARK 500 6 GLN A 105 41.84 39.43 REMARK 500 6 VAL A 122 109.07 -41.56 REMARK 500 6 GLN A 128 -74.55 -102.69 REMARK 500 6 ASN A 129 -91.44 -54.10 REMARK 500 6 GLU A 134 -58.43 -121.69 REMARK 500 6 ASP A 167 52.01 -113.94 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7209 RELATED DB: BMRB DBREF 2IVW A 69 181 UNP Q7DD77 Q7DD77_NEIMB 69 181 SEQRES 1 A 113 GLU THR ASP LYS LYS GLY GLU ASN ALA PRO ASP THR LYS SEQRES 2 A 113 ARG ILE LYS GLU THR LEU GLU LYS PHE SER LEU GLU ASN SEQRES 3 A 113 MET ARG TYR VAL GLY ILE LEU LYS SER GLY GLN LYS VAL SEQRES 4 A 113 SER GLY PHE ILE GLU ALA GLU GLY TYR VAL TYR THR VAL SEQRES 5 A 113 GLY VAL GLY ASN TYR LEU GLY GLN ASN TYR GLY ARG ILE SEQRES 6 A 113 GLU SER ILE THR ASP ASP SER ILE VAL LEU ASN GLU LEU SEQRES 7 A 113 ILE GLU ASP SER THR GLY ASN TRP VAL SER ARG LYS ALA SEQRES 8 A 113 GLU LEU LEU LEU ASN SER SER ASP LYS ASN THR GLU GLN SEQRES 9 A 113 ALA ALA ALA PRO ALA ALA GLU GLN ASN HELIX 1 1 GLU A 85 PHE A 90 5 6 SHEET 1 AA 3 MET A 95 LYS A 102 0 SHEET 2 AA 3 VAL A 107 ALA A 113 -1 O SER A 108 N LEU A 101 SHEET 3 AA 3 TYR A 116 VAL A 120 -1 O TYR A 116 N ALA A 113 SHEET 1 AB 4 ASN A 124 LEU A 126 0 SHEET 2 AB 4 TYR A 130 THR A 137 -1 O GLY A 131 N LEU A 126 SHEET 3 AB 4 SER A 140 GLU A 148 -1 O SER A 140 N THR A 137 SHEET 4 AB 4 TRP A 154 LEU A 162 -1 O VAL A 155 N ILE A 147 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1