HEADER ANTIBIOTIC RESISTANCE 27-JUN-06 2IWD TITLE OXACILLOYL-ACYLATED MECR1 EXTRACELLULAR ANTIBIOTIC-SENSOR DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHICILLIN RESISTANCE MECR1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR PENICILLIN-SENSOR DOMAIN, RESIDUES 340-585; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: N315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BACTERIAL ANTIBIOTIC RESISTANCE, OXACILLIN, BETA-LACTAMASE, MRSA, KEYWDS 2 ANTIBIOTIC RESISTANCE, METHICILLIN RESISTANCE, BETA-LACTAMIC KEYWDS 3 ANTIBIOTICS, PENICILLIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MARRERO,G.MALLORQUI-FERNANDEZ,T.GUEVARA,R.GARCIA-CASTELLANOS, AUTHOR 2 F.X.GOMIS-RUTH REVDAT 6 13-DEC-23 2IWD 1 COMPND HETNAM REVDAT 5 20-JUN-18 2IWD 1 LINK REVDAT 4 02-AUG-17 2IWD 1 REVDAT 3 24-FEB-09 2IWD 1 VERSN REVDAT 2 02-AUG-06 2IWD 1 JRNL REVDAT 1 03-JUL-06 2IWD 0 JRNL AUTH A.MARRERO,G.MALLORQUI-FERNANDEZ,T.GUEVARA, JRNL AUTH 2 R.GARCIA-CASTELLANOS,F.X.GOMIS-RUTH JRNL TITL UNBOUND AND ACYLATED STRUCTURES OF THE MECR1 EXTRACELLULAR JRNL TITL 2 ANTIBIOTIC-SENSOR DOMAIN PROVIDE INSIGHTS INTO THE JRNL TITL 3 SIGNAL-TRANSDUCTION SYSTEM THAT TRIGGERS METHICILLIN JRNL TITL 4 RESISTANCE. JRNL REF J.MOL.BIOL. V. 361 506 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16846613 JRNL DOI 10.1016/J.JMB.2006.06.046 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 490 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 3.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.562 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2145 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2899 ; 1.566 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.725 ;25.984 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;18.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;25.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1676 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1006 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1446 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1257 ; 0.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1964 ; 1.233 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 1.796 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 932 ; 2.855 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 585 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0939 6.3193 86.1924 REMARK 3 T TENSOR REMARK 3 T11: -0.1459 T22: -0.1788 REMARK 3 T33: -0.2202 T12: 0.0091 REMARK 3 T13: 0.0300 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.4583 L22: 2.8472 REMARK 3 L33: 2.8173 L12: 0.1536 REMARK 3 L13: -0.6592 L23: 0.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: 0.2985 S13: -0.1510 REMARK 3 S21: -0.1124 S22: -0.1590 S23: 0.1747 REMARK 3 S31: -0.0222 S32: -0.5027 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 585 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0033 6.1735 85.8286 REMARK 3 T TENSOR REMARK 3 T11: -0.1201 T22: -0.1686 REMARK 3 T33: -0.2033 T12: 0.0206 REMARK 3 T13: 0.0384 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.7993 L22: 3.2014 REMARK 3 L33: 3.1576 L12: 0.0508 REMARK 3 L13: -0.6070 L23: 0.6473 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: 0.3047 S13: -0.1718 REMARK 3 S21: -0.1644 S22: -0.1905 S23: 0.1861 REMARK 3 S31: -0.0172 S32: -0.4937 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 701 W 728 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9200 10.6566 89.1521 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.1824 REMARK 3 T33: 0.2485 T12: 0.0356 REMARK 3 T13: 0.0427 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 0.9654 L22: 1.4888 REMARK 3 L33: 1.5446 L12: -0.3625 REMARK 3 L13: -0.0897 L23: -0.5843 REMARK 3 S TENSOR REMARK 3 S11: 0.3518 S12: 0.1219 S13: 0.1274 REMARK 3 S21: -0.2050 S22: -0.1056 S23: -0.2655 REMARK 3 S31: -0.0797 S32: 0.0521 S33: -0.2463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : COMBAT, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10438 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2IWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M TRIBASIC AMMONIUM CITRATE AT REMARK 280 PH6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.70000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.98500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.98500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.55000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.85000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.55000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 722 O HOH A 725 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 389 C PRO A 389 O 0.234 REMARK 500 SER A 391 C THR A 392 N 0.199 REMARK 500 ASN A 478 CA ASN A 478 CB -0.682 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 478 N - CA - CB ANGL. DEV. = -25.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 351 51.32 -112.20 REMARK 500 ASN A 379 69.20 69.34 REMARK 500 ASN A 390 -128.11 47.27 REMARK 500 HIS A 411 82.64 -154.78 REMARK 500 LYS A 418 3.82 89.83 REMARK 500 ASN A 427 43.95 -82.55 REMARK 500 ASN A 475 53.95 -94.27 REMARK 500 SER A 480 -140.58 -129.94 REMARK 500 HIS A 502 42.13 -81.51 REMARK 500 GLU A 583 65.30 71.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1S6 A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IWB RELATED DB: PDB REMARK 900 MECR1 UNBOUND EXTRACELLULAR ANTIBIOTIC-SENSOR DOMAIN. REMARK 900 RELATED ID: 2IWC RELATED DB: PDB REMARK 900 BENZYLPENICILLOYL-ACYLATED MECR1 EXTRACELLULAR ANTIBIOTIC-SENSOR REMARK 900 DOMAIN. DBREF 2IWD A 340 585 UNP P0A0B0 MECR_STAAN 340 585 SEQRES 1 A 246 ASP LYS TYR GLU THR ASN VAL SER TYR LYS LYS LEU ASN SEQRES 2 A 246 GLN LEU ALA PRO TYR PHE LYS GLY PHE ASP GLY SER PHE SEQRES 3 A 246 VAL LEU TYR ASN GLU ARG GLU GLN ALA TYR SER ILE TYR SEQRES 4 A 246 ASN GLU PRO GLU SER LYS GLN ARG TYR SER PRO ASN SER SEQRES 5 A 246 THR TYR LYS ILE TYR LEU ALA LEU MET ALA PHE ASP GLN SEQRES 6 A 246 ASN LEU LEU SER LEU ASN HIS THR GLU GLN GLN TRP ASP SEQRES 7 A 246 LYS HIS GLN TYR PRO PHE LYS GLU TRP ASN GLN ASP GLN SEQRES 8 A 246 ASN LEU ASN SER SER MET LYS TYR SER VAL ASN TRP TYR SEQRES 9 A 246 TYR GLU ASN LEU ASN LYS HIS LEU ARG GLN ASP GLU VAL SEQRES 10 A 246 LYS SER TYR LEU ASP LEU ILE GLU TYR GLY ASN GLU GLU SEQRES 11 A 246 ILE SER GLY ASN GLU ASN TYR TRP ASN GLU SER SER LEU SEQRES 12 A 246 LYS ILE SER ALA ILE GLU GLN VAL ASN LEU LEU LYS ASN SEQRES 13 A 246 MET LYS GLN HIS ASN MET HIS PHE ASP ASN LYS ALA ILE SEQRES 14 A 246 GLU LYS VAL GLU ASN SER MET THR LEU LYS GLN LYS ASP SEQRES 15 A 246 THR TYR LYS TYR VAL GLY LYS THR GLY THR GLY ILE VAL SEQRES 16 A 246 ASN HIS LYS GLU ALA ASN GLY TRP PHE VAL GLY TYR VAL SEQRES 17 A 246 GLU THR LYS ASP ASN THR TYR TYR PHE ALA THR HIS LEU SEQRES 18 A 246 LYS GLY GLU ASP ASN ALA ASN GLY GLU LYS ALA GLN GLN SEQRES 19 A 246 ILE SER GLU ARG ILE LEU LYS GLU MET GLU LEU ILE HET 1S6 A 601 28 HETNAM 1S6 (2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(5-METHYL-3-PHENYL-1, HETNAM 2 1S6 2-OXAZOL-4-YL)CARBONYL]AMINO}-2-OXOETHYL]-1,3- HETNAM 3 1S6 THIAZOLIDINE-4-CARB OXYLIC ACID HETSYN 1S6 OXACILLIN, BOUND FORM FORMUL 2 1S6 C19 H21 N3 O5 S FORMUL 3 HOH *26(H2 O) HELIX 1 1 ASN A 352 LYS A 359 5 8 HELIX 2 2 ASN A 379 GLN A 385 1 7 HELIX 3 3 TYR A 393 GLN A 404 1 12 HELIX 4 4 PHE A 423 ASN A 427 5 5 HELIX 5 5 ASN A 431 TYR A 438 1 8 HELIX 6 6 VAL A 440 LEU A 451 1 12 HELIX 7 7 ARG A 452 GLU A 464 1 13 HELIX 8 8 ALA A 486 GLN A 498 1 13 HELIX 9 9 ASP A 504 MET A 515 1 12 HELIX 10 10 ASN A 567 MET A 582 1 16 SHEET 1 AA 7 TYR A 348 LYS A 350 0 SHEET 2 AA 7 ALA A 374 TYR A 378 1 O TYR A 375 N LYS A 349 SHEET 3 AA 7 ASP A 362 ASN A 369 -1 O PHE A 365 N TYR A 378 SHEET 4 AA 7 THR A 553 LYS A 561 -1 O TYR A 555 N TYR A 368 SHEET 5 AA 7 LYS A 537 THR A 549 -1 O GLY A 541 N LEU A 560 SHEET 6 AA 7 TYR A 523 VAL A 534 -1 O LYS A 524 N GLU A 548 SHEET 7 AA 7 THR A 516 GLN A 519 -1 N LEU A 517 O TYR A 525 SHEET 1 AB 2 ARG A 386 TYR A 387 0 SHEET 2 AB 2 ILE A 484 SER A 485 -1 O ILE A 484 N TYR A 387 LINK OG SER A 391 C 1S6 A 601 1555 1555 1.45 SITE 1 AC1 12 ASN A 390 SER A 391 PHE A 423 SER A 439 SITE 2 AC1 12 ASN A 441 ASN A 478 THR A 529 GLY A 530 SITE 3 AC1 12 THR A 531 GLY A 532 ILE A 533 GLU A 538 CRYST1 57.970 57.970 147.400 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006784 0.00000