HEADER HYDROLASE 07-JUL-06 2IX9 TITLE RESPECTIVE ROLE OF PROTEIN FOLDING AND GLYCOSYLATION IN THE THERMAL TITLE 2 STABILITY OF RECOMBINANT FERULOYL ESTERASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULOYL ESTERASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 22-281; COMPND 5 SYNONYM: FERULOYL ESTERASE TYPE A, FAE-III, CINNAMOYL ESTERASE; COMPND 6 EC: 3.1.1.73; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 STRAIN: D15PYRG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDESTOI17 KEYWDS HYDROLASE, XYLAN DEGRADATION, FERULOYL ESTERASE EC 3.1.1.73, KEYWDS 2 GLYCOPROTEIN, SERINE ESTERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SULZENBACHER,I.BENOIT REVDAT 4 13-DEC-23 2IX9 1 REMARK REVDAT 3 24-FEB-09 2IX9 1 VERSN REVDAT 2 25-OCT-06 2IX9 1 JRNL REVDAT 1 18-OCT-06 2IX9 0 JRNL AUTH I.BENOIT,M.ASTHER,G.SULZENBACHER,E.RECORD,L.MARMUSE, JRNL AUTH 2 G.PARSIEGLA,I.GIMBERT,M.ASTHER,C.BIGNON JRNL TITL RESPECTIVE IMPORTANCE OF PROTEIN FOLDING AND GLYCOSYLATION JRNL TITL 2 IN THE THERMAL STABILITY OF RECOMBINANT FERULOYL ESTERASE A. JRNL REF FEBS LETT. V. 580 5815 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 17027758 JRNL DOI 10.1016/J.FEBSLET.2006.09.039 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 57868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4241 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2698 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5807 ; 1.383 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6607 ; 0.918 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 550 ; 6.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;35.763 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 619 ;12.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4868 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 907 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3015 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2178 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2036 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 401 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 1.681 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4254 ; 2.038 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1892 ; 1.997 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1537 ; 2.832 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1960 0.3350 21.9520 REMARK 3 T TENSOR REMARK 3 T11: -0.0549 T22: -0.0403 REMARK 3 T33: -0.0448 T12: -0.0026 REMARK 3 T13: 0.0119 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.6534 L22: 0.8816 REMARK 3 L33: 0.6423 L12: -0.0615 REMARK 3 L13: 0.0116 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0587 S13: 0.0331 REMARK 3 S21: -0.0335 S22: -0.0159 S23: -0.0550 REMARK 3 S31: -0.0117 S32: 0.0231 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4460 -20.3940 52.2990 REMARK 3 T TENSOR REMARK 3 T11: -0.0362 T22: -0.0239 REMARK 3 T33: -0.0532 T12: 0.0075 REMARK 3 T13: 0.0061 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.0134 L22: 0.6926 REMARK 3 L33: 0.6844 L12: -0.1253 REMARK 3 L13: -0.0695 L23: -0.0868 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.1173 S13: -0.0531 REMARK 3 S21: 0.0618 S22: 0.0232 S23: 0.0067 REMARK 3 S31: 0.0219 S32: 0.0097 S33: -0.0166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.B FACTORS CORRESPOND TO THE OVERALL B FACTORS EQUAL TO REMARK 3 THE RESIDUAL PLUS THE TLS COMPONENT. REMARK 4 REMARK 4 2IX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2HL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE 0.2 M LITHIUM REMARK 280 SULPHATE 0.1 M CAPS PH 9.5, PH 9.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.41250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.41250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2036 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2084 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2087 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 133 -123.38 63.34 REMARK 500 SER A 192 -116.58 42.89 REMARK 500 PRO A 197 -8.21 -58.09 REMARK 500 CYS A 234 -136.50 62.36 REMARK 500 ALA B 26 53.95 -141.05 REMARK 500 SER B 133 -122.96 61.72 REMARK 500 ASN B 152 50.38 -116.48 REMARK 500 PRO B 161 171.88 -57.94 REMARK 500 SER B 192 -129.20 52.87 REMARK 500 ASN B 193 34.69 -98.92 REMARK 500 CYS B 234 -134.08 53.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2036 DISTANCE = 6.15 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS B1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1USW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FERULIC ACID ESTERASE FROM ASPERGILLUS NIGER REMARK 900 RELATED ID: 1UWC RELATED DB: PDB REMARK 900 FERULOYL ESTERASE FROM ASPERGILLUS NIGER REMARK 900 RELATED ID: 1UZA RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF A FERULOYL ESTERASE FROM ASPERGILLUS REMARK 900 NIGER REMARK 900 RELATED ID: 2BJH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S133A ANFAEA-FERULIC ACID COMPLEX DBREF 2IX9 A 1 260 UNP O42807 FAEA_ASPNG 22 281 DBREF 2IX9 B 1 260 UNP O42807 FAEA_ASPNG 22 281 SEQADV 2IX9 GLU A 203 UNP O42807 ASP 224 CONFLICT SEQADV 2IX9 GLN A 204 UNP O42807 GLU 225 CONFLICT SEQADV 2IX9 GLU B 203 UNP O42807 ASP 224 CONFLICT SEQADV 2IX9 GLN B 204 UNP O42807 GLU 225 CONFLICT SEQRES 1 A 260 ALA SER THR GLN GLY ILE SER GLU ASP LEU TYR ASN ARG SEQRES 2 A 260 LEU VAL GLU MET ALA THR ILE SER GLN ALA ALA TYR ALA SEQRES 3 A 260 ASP LEU CYS ASN ILE PRO SER THR ILE ILE LYS GLY GLU SEQRES 4 A 260 LYS ILE TYR ASN ALA GLN THR ASP ILE ASN GLY TRP ILE SEQRES 5 A 260 LEU ARG ASP ASP THR SER LYS GLU ILE ILE THR VAL PHE SEQRES 6 A 260 ARG GLY THR GLY SER ASP THR ASN LEU GLN LEU ASP THR SEQRES 7 A 260 ASN TYR THR LEU THR PRO PHE ASP THR LEU PRO GLN CYS SEQRES 8 A 260 ASN ASP CYS GLU VAL HIS GLY GLY TYR TYR ILE GLY TRP SEQRES 9 A 260 ILE SER VAL GLN ASP GLN VAL GLU SER LEU VAL LYS GLN SEQRES 10 A 260 GLN ALA SER GLN TYR PRO ASP TYR ALA LEU THR VAL THR SEQRES 11 A 260 GLY HIS SER LEU GLY ALA SER MET ALA ALA LEU THR ALA SEQRES 12 A 260 ALA GLN LEU SER ALA THR TYR ASP ASN VAL ARG LEU TYR SEQRES 13 A 260 THR PHE GLY GLU PRO ARG SER GLY ASN GLN ALA PHE ALA SEQRES 14 A 260 SER TYR MET ASN ASP ALA PHE GLN VAL SER SER PRO GLU SEQRES 15 A 260 THR THR GLN TYR PHE ARG VAL THR HIS SER ASN ASP GLY SEQRES 16 A 260 ILE PRO ASN LEU PRO PRO ALA GLU GLN GLY TYR ALA HIS SEQRES 17 A 260 GLY GLY VAL GLU TYR TRP SER VAL ASP PRO TYR SER ALA SEQRES 18 A 260 GLN ASN THR PHE VAL CYS THR GLY ASP GLU VAL GLN CYS SEQRES 19 A 260 CYS GLU ALA GLN GLY GLY GLN GLY VAL ASN ASP ALA HIS SEQRES 20 A 260 THR THR TYR PHE GLY MET THR SER GLY ALA CYS THR TRP SEQRES 1 B 260 ALA SER THR GLN GLY ILE SER GLU ASP LEU TYR ASN ARG SEQRES 2 B 260 LEU VAL GLU MET ALA THR ILE SER GLN ALA ALA TYR ALA SEQRES 3 B 260 ASP LEU CYS ASN ILE PRO SER THR ILE ILE LYS GLY GLU SEQRES 4 B 260 LYS ILE TYR ASN ALA GLN THR ASP ILE ASN GLY TRP ILE SEQRES 5 B 260 LEU ARG ASP ASP THR SER LYS GLU ILE ILE THR VAL PHE SEQRES 6 B 260 ARG GLY THR GLY SER ASP THR ASN LEU GLN LEU ASP THR SEQRES 7 B 260 ASN TYR THR LEU THR PRO PHE ASP THR LEU PRO GLN CYS SEQRES 8 B 260 ASN ASP CYS GLU VAL HIS GLY GLY TYR TYR ILE GLY TRP SEQRES 9 B 260 ILE SER VAL GLN ASP GLN VAL GLU SER LEU VAL LYS GLN SEQRES 10 B 260 GLN ALA SER GLN TYR PRO ASP TYR ALA LEU THR VAL THR SEQRES 11 B 260 GLY HIS SER LEU GLY ALA SER MET ALA ALA LEU THR ALA SEQRES 12 B 260 ALA GLN LEU SER ALA THR TYR ASP ASN VAL ARG LEU TYR SEQRES 13 B 260 THR PHE GLY GLU PRO ARG SER GLY ASN GLN ALA PHE ALA SEQRES 14 B 260 SER TYR MET ASN ASP ALA PHE GLN VAL SER SER PRO GLU SEQRES 15 B 260 THR THR GLN TYR PHE ARG VAL THR HIS SER ASN ASP GLY SEQRES 16 B 260 ILE PRO ASN LEU PRO PRO ALA GLU GLN GLY TYR ALA HIS SEQRES 17 B 260 GLY GLY VAL GLU TYR TRP SER VAL ASP PRO TYR SER ALA SEQRES 18 B 260 GLN ASN THR PHE VAL CYS THR GLY ASP GLU VAL GLN CYS SEQRES 19 B 260 CYS GLU ALA GLN GLY GLY GLN GLY VAL ASN ASP ALA HIS SEQRES 20 B 260 THR THR TYR PHE GLY MET THR SER GLY ALA CYS THR TRP HET CXS A1261 14 HET EDO A1262 4 HET EDO A1263 4 HET EDO A1264 4 HET EDO A1265 4 HET EDO A1266 4 HET SO4 A1267 5 HET CXS B1261 14 HET EDO B1262 4 HET EDO B1263 4 HET EDO B1264 4 HET SO4 B1265 5 HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CXS 2(C9 H19 N O3 S) FORMUL 4 EDO 8(C2 H6 O2) FORMUL 9 SO4 2(O4 S 2-) FORMUL 15 HOH *525(H2 O) HELIX 1 1 GLU A 8 TYR A 25 1 18 HELIX 2 2 SER A 70 THR A 78 1 9 HELIX 3 3 GLY A 98 TRP A 104 1 7 HELIX 4 4 GLN A 108 TYR A 122 1 15 HELIX 5 5 LEU A 134 THR A 149 1 16 HELIX 6 6 GLN A 166 PHE A 176 1 11 HELIX 7 7 ILE A 196 ASN A 198 5 3 HELIX 8 8 ALA A 202 GLN A 204 5 3 HELIX 9 9 CYS A 235 GLN A 238 5 4 HELIX 10 10 ASP A 245 THR A 248 1 4 HELIX 11 11 GLU B 8 TYR B 25 1 18 HELIX 12 12 SER B 70 THR B 78 1 9 HELIX 13 13 GLY B 98 TRP B 104 1 7 HELIX 14 14 GLN B 108 TYR B 122 1 15 HELIX 15 15 LEU B 134 THR B 149 1 16 HELIX 16 16 GLN B 166 PHE B 176 1 11 HELIX 17 17 ILE B 196 ASN B 198 5 3 HELIX 18 18 ALA B 202 GLN B 204 5 3 HELIX 19 19 CYS B 235 GLN B 238 5 4 HELIX 20 20 ASP B 245 THR B 248 1 4 SHEET 1 AA 9 SER A 2 GLN A 4 0 SHEET 2 AA 9 THR A 224 CYS A 227 -1 O VAL A 226 N THR A 3 SHEET 3 AA 9 VAL A 211 SER A 215 -1 O GLU A 212 N CYS A 227 SHEET 4 AA 9 TYR A 186 HIS A 191 1 O TYR A 186 N VAL A 211 SHEET 5 AA 9 VAL A 153 PHE A 158 1 O LEU A 155 N PHE A 187 SHEET 6 AA 9 ALA A 126 HIS A 132 1 O LEU A 127 N ARG A 154 SHEET 7 AA 9 GLU A 60 PHE A 65 1 O ILE A 61 N THR A 128 SHEET 8 AA 9 ILE A 48 ASP A 55 -1 O TRP A 51 N VAL A 64 SHEET 9 AA 9 ILE A 36 ASN A 43 -1 O ILE A 36 N ARG A 54 SHEET 1 AB 2 LEU A 82 PRO A 84 0 SHEET 2 AB 2 GLU A 95 HIS A 97 -1 O VAL A 96 N THR A 83 SHEET 1 BA 9 SER B 2 GLN B 4 0 SHEET 2 BA 9 THR B 224 CYS B 227 -1 O VAL B 226 N THR B 3 SHEET 3 BA 9 VAL B 211 SER B 215 -1 O GLU B 212 N CYS B 227 SHEET 4 BA 9 TYR B 186 HIS B 191 1 O TYR B 186 N VAL B 211 SHEET 5 BA 9 VAL B 153 PHE B 158 1 O LEU B 155 N PHE B 187 SHEET 6 BA 9 ALA B 126 HIS B 132 1 O LEU B 127 N ARG B 154 SHEET 7 BA 9 GLU B 60 PHE B 65 1 O ILE B 61 N THR B 128 SHEET 8 BA 9 ILE B 48 ASP B 55 -1 O TRP B 51 N VAL B 64 SHEET 9 BA 9 ILE B 35 ASN B 43 -1 O ILE B 36 N ARG B 54 SHEET 1 BB 2 LEU B 82 PRO B 84 0 SHEET 2 BB 2 GLU B 95 HIS B 97 -1 O VAL B 96 N THR B 83 SSBOND 1 CYS A 29 CYS A 258 1555 1555 2.09 SSBOND 2 CYS A 91 CYS A 94 1555 1555 2.02 SSBOND 3 CYS A 227 CYS A 234 1555 1555 2.02 SSBOND 4 CYS B 29 CYS B 258 1555 1555 2.07 SSBOND 5 CYS B 91 CYS B 94 1555 1555 2.04 SSBOND 6 CYS B 227 CYS B 234 1555 1555 2.09 CISPEP 1 LEU A 199 PRO A 200 0 -13.99 CISPEP 2 ASP A 217 PRO A 218 0 -3.99 CISPEP 3 LEU B 199 PRO B 200 0 -14.25 CISPEP 4 ASP B 217 PRO B 218 0 -5.25 SITE 1 AC1 5 ARG A 162 ALA A 207 HIS A 208 HOH A2281 SITE 2 AC1 5 HOH A2282 SITE 1 AC2 4 ARG B 162 ALA B 207 HIS B 208 HOH B2243 SITE 1 AC3 12 TYR A 25 THR A 68 SER A 133 HIS A 247 SITE 2 AC3 12 SER A 255 GLY A 256 EDO A1265 HOH A2271 SITE 3 AC3 12 HOH A2272 HOH A2273 HOH A2274 ASP B 71 SITE 1 AC4 6 ASP A 77 TYR A 80 HIS A 97 TYR A 100 SITE 2 AC4 6 LEU A 199 EDO A1264 SITE 1 AC5 10 GLU A 160 SER A 163 GLY A 164 PHE A 168 SITE 2 AC5 10 ALA A 169 MET A 172 TYR A 186 ALA A 207 SITE 3 AC5 10 GLY A 209 HOH A2276 SITE 1 AC6 5 ASP A 77 TYR A 100 SER A 133 EDO A1262 SITE 2 AC6 5 HOH A2277 SITE 1 AC7 8 THR A 248 THR A 254 SER A 255 CXS A1261 SITE 2 AC7 8 HOH A2266 HOH A2278 GLN B 45 ASP B 71 SITE 1 AC8 4 SER A 7 GLU A 8 ASP A 9 HOH A2279 SITE 1 AC9 9 ASP A 71 LEU A 74 HOH A2102 TYR B 25 SITE 2 AC9 9 THR B 68 HIS B 247 SER B 255 GLY B 256 SITE 3 AC9 9 HOH B2240 SITE 1 BC1 5 ASP B 77 TYR B 80 HIS B 97 TYR B 100 SITE 2 BC1 5 EDO B1264 SITE 1 BC2 8 GLU B 160 SER B 163 GLY B 164 PHE B 168 SITE 2 BC2 8 TYR B 186 ALA B 207 GLY B 209 HOH B2241 SITE 1 BC3 5 LEU B 74 ASP B 77 VAL B 243 EDO B1262 SITE 2 BC3 5 HOH B2242 CRYST1 158.825 51.556 72.553 90.00 109.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006296 0.000000 0.002201 0.00000 SCALE2 0.000000 0.019396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014601 0.00000 MTRIX1 1 -0.250290 0.707530 0.660870 -9.98216 1 MTRIX2 1 0.713840 -0.326270 0.619660 -40.47337 1 MTRIX3 1 0.654060 0.626850 -0.423400 55.38137 1