HEADER HYDROLASE 07-JUL-06 2IXB TITLE CRYSTAL STRUCTURE OF N-ACETYLGALACTOSAMINIDASE IN COMPLEX WITH GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGALACTOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.49; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM MENINGOSEPTICUM; SOURCE 3 ORGANISM_TAXID: 238; SOURCE 4 ATCC: 13253; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS N-ACETYLGALACTOSAMINIDASE, NAD, A-ECO CONVERSION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SULZENBACHER,Q.P.LIU,Y.BOURNE,B.HENRISSAT,H.CLAUSEN REVDAT 5 13-DEC-23 2IXB 1 HETSYN REVDAT 4 29-JUL-20 2IXB 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 07-MAR-18 2IXB 1 SOURCE REVDAT 2 24-FEB-09 2IXB 1 VERSN REVDAT 1 10-APR-07 2IXB 0 JRNL AUTH Q.P.LIU,G.SULZENBACHER,H.YUAN,E.P.BENNETT,G.PIETZ, JRNL AUTH 2 K.SAUNDERS,J.SPENCE,E.NUDELMAN,S.B.LEVERY,T.WHITE,J.M.NEVEU, JRNL AUTH 3 W.S.LANE,Y.BOURNE,M.L.OLSSON,B.HENRISSAT,H.CLAUSEN JRNL TITL BACTERIAL GLYCOSIDASES FOR THE PRODUCTION OF UNIVERSAL RED JRNL TITL 2 BLOOD CELLS. JRNL REF NAT.BIOTECHNOL. V. 25 454 2007 JRNL REFN ISSN 1087-0156 JRNL PMID 17401360 JRNL DOI 10.1038/NBT1298 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 26303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : 2.85000 REMARK 3 B33 (A**2) : -4.28000 REMARK 3 B12 (A**2) : 1.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3601 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2456 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4875 ; 1.141 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5956 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;33.978 ;24.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;16.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3994 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 689 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2516 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1697 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1782 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.134 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.332 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2748 ; 0.425 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3387 ; 0.491 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1800 ; 0.911 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1486 ; 1.386 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3307 45.2454 -9.2204 REMARK 3 T TENSOR REMARK 3 T11: .0482 T22: .0461 REMARK 3 T33: -.0493 T12: -.0599 REMARK 3 T13: .1025 T23: -.1129 REMARK 3 L TENSOR REMARK 3 L11: 2.3255 L22: 1.9667 REMARK 3 L33: 3.2102 L12: .3326 REMARK 3 L13: .0353 L23: .5557 REMARK 3 S TENSOR REMARK 3 S11: -.0685 S12: .4095 S13: -.2140 REMARK 3 S21: -.3607 S22: .0038 S23: -.0729 REMARK 3 S31: .3616 S32: -.1565 S33: .0647 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 167 REMARK 3 RESIDUE RANGE : A 206 A 238 REMARK 3 RESIDUE RANGE : A 266 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6838 60.2591 10.5956 REMARK 3 T TENSOR REMARK 3 T11: -.1644 T22: -.0947 REMARK 3 T33: -.1281 T12: -.0174 REMARK 3 T13: .0358 T23: .0114 REMARK 3 L TENSOR REMARK 3 L11: .7180 L22: 1.8272 REMARK 3 L33: 1.9355 L12: .0601 REMARK 3 L13: .1103 L23: -.0753 REMARK 3 S TENSOR REMARK 3 S11: -.0448 S12: .1600 S13: -.0366 REMARK 3 S21: -.0714 S22: .0107 S23: -.1528 REMARK 3 S31: -.0500 S32: .1045 S33: .0341 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 205 REMARK 3 RESIDUE RANGE : A 239 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7831 33.5639 14.0668 REMARK 3 T TENSOR REMARK 3 T11: .1619 T22: -.0753 REMARK 3 T33: .0963 T12: -.0926 REMARK 3 T13: .0856 T23: -.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.9306 L22: 1.6406 REMARK 3 L33: 4.3440 L12: .3259 REMARK 3 L13: .5286 L23: .1657 REMARK 3 S TENSOR REMARK 3 S11: .0195 S12: .1023 S13: -.5540 REMARK 3 S21: -.0432 S22: .0639 S23: .0432 REMARK 3 S31: .9871 S32: -.2703 S33: -.0834 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. GLOBAL B-FACTORS, CONTAINING RESIDUAL AND TLS REMARK 3 COMPONENT HAVE BEEN DEPOSITED. REMARK 4 REMARK 4 2IXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2IXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 46-50% 2-METHYL-2,4-PENTANEDIOL (MPD), REMARK 280 75 MM NA-CITRATE PH 6.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 200.95867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.47933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.71900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.23967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 251.19833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 200.95867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 100.47933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.23967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 150.71900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 251.19833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 44.09450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 76.37391 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.23967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 PHE A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 13 REMARK 465 PHE A 14 REMARK 465 ASP A 15 REMARK 465 PHE A 16 REMARK 465 ASN A 17 REMARK 465 PRO A 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 114.80 89.02 REMARK 500 SER A 123 -160.11 169.12 REMARK 500 SER A 208 -132.16 52.74 REMARK 500 TYR A 225 72.64 -156.40 REMARK 500 ARG A 256 -25.82 -141.55 REMARK 500 ARG A 305 154.10 176.16 REMARK 500 ASN A 308 118.82 -165.63 REMARK 500 GLN A 330 46.85 -97.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IXA RELATED DB: PDB REMARK 900 A-ZYME, N-ACETYLGALACTOSAMINIDASE DBREF 2IXB A 1 444 PDB 2IXB 2IXB 1 444 SEQRES 1 A 444 MET GLY ALA LEU ILE PRO SER SER THR LEU PHE ASN ILE SEQRES 2 A 444 PHE ASP PHE ASN PRO LYS LYS VAL ARG ILE ALA PHE ILE SEQRES 3 A 444 ALA VAL GLY LEU ARG GLY GLN THR HIS VAL GLU ASN MET SEQRES 4 A 444 ALA ARG ARG ASP ASP VAL GLU ILE VAL ALA PHE ALA ASP SEQRES 5 A 444 PRO ASP PRO TYR MET VAL GLY ARG ALA GLN GLU ILE LEU SEQRES 6 A 444 LYS LYS ASN GLY LYS LYS PRO ALA LYS VAL PHE GLY ASN SEQRES 7 A 444 GLY ASN ASP ASP TYR LYS ASN MET LEU LYS ASP LYS ASN SEQRES 8 A 444 ILE ASP ALA VAL PHE VAL SER SER PRO TRP GLU TRP HIS SEQRES 9 A 444 HIS GLU HIS GLY VAL ALA ALA MET LYS ALA GLY LYS ILE SEQRES 10 A 444 VAL GLY MET GLU VAL SER GLY ALA ILE THR LEU GLU GLU SEQRES 11 A 444 CYS TRP ASP TYR VAL LYS VAL SER GLU GLN THR GLY VAL SEQRES 12 A 444 PRO LEU MET ALA LEU GLU ASN VAL CYS TYR ARG ARG ASP SEQRES 13 A 444 VAL MET ALA ILE LEU ASN MET VAL ARG LYS GLY MET PHE SEQRES 14 A 444 GLY GLU LEU VAL HIS GLY THR GLY GLY TYR GLN HIS ASP SEQRES 15 A 444 LEU ARG PRO VAL LEU PHE ASN SER GLY ILE ASN GLY LYS SEQRES 16 A 444 ASN GLY ASP GLY VAL GLU PHE GLY GLU LYS ALA PHE SER SEQRES 17 A 444 GLU ALA LYS TRP ARG THR ASN HIS TYR LYS ASN ARG ASN SEQRES 18 A 444 GLY GLU LEU TYR PRO THR HIS GLY VAL GLY PRO LEU HIS SEQRES 19 A 444 THR MET MET ASP ILE ASN ARG GLY ASN ARG LEU LEU ARG SEQRES 20 A 444 LEU SER SER PHE ALA SER LYS ALA ARG GLY LEU HIS LYS SEQRES 21 A 444 TYR ILE VAL ASP LYS GLY GLY GLU SER HIS PRO ASN ALA SEQRES 22 A 444 LYS VAL GLU TRP LYS GLN GLY ASP ILE VAL THR THR GLN SEQRES 23 A 444 ILE GLN CYS HIS ASN GLY GLU THR ILE VAL LEU THR HIS SEQRES 24 A 444 ASP THR SER LEU GLN ARG PRO TYR ASN LEU GLY PHE LYS SEQRES 25 A 444 VAL GLN GLY THR GLU GLY LEU TRP GLU ASP PHE GLY TRP SEQRES 26 A 444 GLY GLU ALA ALA GLN GLY PHE ILE TYR PHE GLU LYS ILE SEQRES 27 A 444 MET ASN HIS SER HIS ARG TRP ASP SER SER GLU LYS TRP SEQRES 28 A 444 ILE LYS GLU TYR ASP HIS PRO MET TRP LYS LYS HIS GLU SEQRES 29 A 444 GLN LYS ALA VAL GLY ALA GLY HIS GLY GLY MET ASP TYR SEQRES 30 A 444 PHE LEU ASP ASN THR PHE VAL GLU CYS ILE LYS ARG ASN SEQRES 31 A 444 GLU ALA PHE PRO LEU ASP VAL TYR ASP LEU ALA THR TRP SEQRES 32 A 444 TYR SER ILE THR PRO LEU SER GLU LYS SER ILE ALA GLU SEQRES 33 A 444 ASN GLY ALA VAL GLN GLU ILE PRO ASP PHE THR ASN GLY SEQRES 34 A 444 LYS TRP LYS ASN ALA LYS ASN THR PHE ALA ILE ASN ASP SEQRES 35 A 444 ASP TYR HET NAD A1445 44 HET A2G A1446 15 HET MRD A1447 8 HET MRD A1448 8 HET MPD A1449 8 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 A2G C8 H15 N O6 FORMUL 4 MRD 2(C6 H14 O2) FORMUL 6 MPD C6 H14 O2 FORMUL 7 HOH *178(H2 O) HELIX 1 1 LEU A 30 ARG A 41 1 12 HELIX 2 2 PRO A 55 ASN A 68 1 14 HELIX 3 3 ASP A 82 LYS A 88 1 7 HELIX 4 4 TRP A 101 TRP A 103 5 3 HELIX 5 5 HIS A 104 ALA A 114 1 11 HELIX 6 6 LEU A 128 THR A 141 1 14 HELIX 7 7 VAL A 151 TYR A 153 5 3 HELIX 8 8 ARG A 155 LYS A 166 1 12 HELIX 9 9 ARG A 184 PHE A 188 1 5 HELIX 10 10 GLU A 209 LYS A 211 5 3 HELIX 11 11 TRP A 212 ARG A 220 1 9 HELIX 12 12 THR A 227 MET A 237 1 11 HELIX 13 13 ARG A 256 GLY A 266 1 11 HELIX 14 14 ASN A 272 LYS A 274 5 3 HELIX 15 15 GLU A 349 TYR A 355 1 7 HELIX 16 16 PRO A 358 GLU A 364 1 7 HELIX 17 17 GLN A 365 ALA A 367 5 3 HELIX 18 18 GLY A 374 ARG A 389 1 16 HELIX 19 19 VAL A 397 GLU A 416 1 20 HELIX 20 20 LYS A 430 LYS A 432 5 3 SHEET 1 AA 6 LYS A 74 PHE A 76 0 SHEET 2 AA 6 VAL A 45 ALA A 51 1 O VAL A 48 N LYS A 74 SHEET 3 AA 6 VAL A 21 ILE A 26 1 O VAL A 21 N GLU A 46 SHEET 4 AA 6 ALA A 94 VAL A 97 1 O ALA A 94 N ALA A 24 SHEET 5 AA 6 ILE A 117 MET A 120 1 O ILE A 117 N VAL A 95 SHEET 6 AA 6 LEU A 145 ALA A 147 1 O MET A 146 N MET A 120 SHEET 1 AB 7 GLY A 331 TYR A 334 0 SHEET 2 AB 7 LEU A 319 ASP A 322 -1 O LEU A 319 N TYR A 334 SHEET 3 AB 7 LYS A 312 GLY A 315 -1 O VAL A 313 N TRP A 320 SHEET 4 AB 7 VAL A 173 GLN A 180 -1 N VAL A 173 O GLN A 314 SHEET 5 AB 7 THR A 294 ASP A 300 1 O THR A 294 N GLY A 175 SHEET 6 AB 7 VAL A 283 CYS A 289 -1 O VAL A 283 N HIS A 299 SHEET 7 AB 7 LEU A 246 ALA A 252 -1 N LEU A 246 O GLN A 288 CRYST1 88.189 88.189 301.438 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011339 0.006547 0.000000 0.00000 SCALE2 0.000000 0.013093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003317 0.00000