HEADER HYDROLASE 07-JUL-06 2IXD TITLE CRYSTAL STRUCTURE OF THE PUTATIVE DEACETYLASE BC1534 FROM BACILLUS TITLE 2 CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMBE-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BC1534 PUTATIVE DEACETYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS HEXAMER, DEACETYLASE, ROSSMANN FOLD, ZINC-DEPENDENT METALLOENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.E.FADOULOGLOU,V.BOURIOTIS,M.KOKKINIDIS REVDAT 5 13-DEC-23 2IXD 1 REMARK LINK REVDAT 4 24-JUL-19 2IXD 1 REMARK REVDAT 3 12-NOV-14 2IXD 1 TITLE KEYWDS JRNL REMARK REVDAT 3 2 1 VERSN FORMUL MASTER REVDAT 2 24-FEB-09 2IXD 1 VERSN REVDAT 1 17-JUL-07 2IXD 0 JRNL AUTH V.E.FADOULOGLOU,A.DELI,N.M.GLYKOS,E.PSYLINAKIS,V.BOURIOTIS, JRNL AUTH 2 M.KOKKINIDIS JRNL TITL CRYSTAL STRUCTURE OF THE BCZBP, A ZINC-BINDING PROTEIN FROM JRNL TITL 2 BACILLUS CEREUS JRNL REF FEBS J. V. 274 3044 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17501983 JRNL DOI 10.1111/J.1742-4658.2007.05834.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.E.FADOULOGLOU,D.KOTSIFAKI,A.D.GAZI,G.FELLAS, REMARK 1 AUTH 2 C.MERAMVELIOTAKI,A.DELI,E.PSYLINAKIS,V.BOURIOTIS, REMARK 1 AUTH 3 M.KOKKINIDIS REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CHARACTERIZATION OF A PUTATIVE LMBE-LIKE DEACETYLASE FROM REMARK 1 TITL 3 BACILLUS CEREUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 261 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511317 REMARK 1 DOI 10.1107/S1744309106004660 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 37533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3813 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5126 ; 1.429 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 4.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2844 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2235 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 569 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 159 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 70 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2309 ; 0.500 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3721 ; 1.225 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 1.821 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 2.905 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 233 REMARK 3 RESIDUE RANGE : A 234 A 234 REMARK 3 RESIDUE RANGE : A 235 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2676 50.7025 152.9337 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.1300 REMARK 3 T33: 0.0869 T12: -0.0157 REMARK 3 T13: 0.0624 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.2010 L22: 1.0689 REMARK 3 L33: 2.6274 L12: 0.2613 REMARK 3 L13: 0.3077 L23: 0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0726 S13: 0.1089 REMARK 3 S21: -0.1120 S22: 0.0204 S23: -0.1191 REMARK 3 S31: -0.2053 S32: 0.1304 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 231 REMARK 3 RESIDUE RANGE : B 232 B 232 REMARK 3 RESIDUE RANGE : B 233 B 233 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8595 31.1539 184.8631 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0618 REMARK 3 T33: 0.0749 T12: 0.0299 REMARK 3 T13: -0.0182 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.0186 L22: 1.1920 REMARK 3 L33: 2.0027 L12: -0.1020 REMARK 3 L13: -0.0437 L23: 0.3059 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0220 S13: -0.1445 REMARK 3 S21: -0.0200 S22: 0.0186 S23: -0.0718 REMARK 3 S31: 0.1928 S32: 0.0722 S33: -0.0431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2821 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-26% MPD, 100 MM ACETATE BUFFER, PH REMARK 280 5.0, PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 37.94600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.90813 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 134.89967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 37.94600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.90813 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 134.89967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 37.94600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.90813 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 134.89967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 37.94600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.90813 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 134.89967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 37.94600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.90813 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.89967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 37.94600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.90813 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 134.89967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.81627 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 269.79933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 43.81627 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 269.79933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 43.81627 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 269.79933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 43.81627 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 269.79933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 43.81627 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 269.79933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 43.81627 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 269.79933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -356.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -37.94600 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 65.72440 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 37.94600 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 65.72440 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2020 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 MET B 1 REMARK 465 CYS B 233 REMARK 465 LYS B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 183 CB OG REMARK 470 LYS A 187 CD CE NZ REMARK 470 LYS A 234 CA C O CB CG CD CE REMARK 470 LYS A 234 NZ REMARK 470 LYS B 29 CE NZ REMARK 470 SER B 183 CB OG REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 GLY B 232 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 14 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR B 106 CD1 - CE1 - CZ ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR B 106 OH - CZ - CE2 ANGL. DEV. = -54.4 DEGREES REMARK 500 TYR B 106 CE1 - CZ - OH ANGL. DEV. = -54.6 DEGREES REMARK 500 TYR B 106 CE1 - CZ - CE2 ANGL. DEV. = 11.5 DEGREES REMARK 500 TYR B 106 CZ - CE2 - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 -20.09 119.33 REMARK 500 MET A 20 24.80 -157.67 REMARK 500 ILE A 149 -81.49 -99.63 REMARK 500 HIS A 226 -71.60 -132.38 REMARK 500 CYS A 233 -19.51 66.73 REMARK 500 ASP B 14 -22.92 116.12 REMARK 500 MET B 20 25.26 -157.58 REMARK 500 ILE B 149 -83.71 -102.96 REMARK 500 TYR B 175 56.48 -90.54 REMARK 500 HIS B 226 -68.18 -143.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B2006 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B2014 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1234 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 ND1 REMARK 620 2 ASP A 15 OD1 122.3 REMARK 620 3 ASP A 15 OD2 87.5 50.4 REMARK 620 4 HIS A 113 NE2 112.2 103.2 86.1 REMARK 620 5 ACT A1235 O 91.3 85.2 123.7 143.6 REMARK 620 6 ACT A1235 OXT 117.7 105.7 153.7 90.3 53.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1232 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 ND1 REMARK 620 2 ASP B 15 OD1 86.7 REMARK 620 3 ASP B 15 OD2 122.4 51.9 REMARK 620 4 HIS B 113 NE2 113.2 87.1 103.7 REMARK 620 5 ACT B1233 OXT 91.7 123.9 84.1 142.1 REMARK 620 6 ACT B1233 O 121.2 151.1 102.0 88.1 54.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1233 DBREF 2IXD A 1 234 UNP Q81FP2 Q81FP2_BACCR 1 234 DBREF 2IXD A 235 242 PDB 2IXD 2IXD 235 242 DBREF 2IXD B 1 234 UNP Q81FP2 Q81FP2_BACCR 1 234 DBREF 2IXD B 235 242 PDB 2IXD 2IXD 235 242 SEQRES 1 A 242 MET SER GLY LEU HIS ILE LEU ALA PHE GLY ALA HIS ALA SEQRES 2 A 242 ASP ASP VAL GLU ILE GLY MET ALA GLY THR ILE ALA LYS SEQRES 3 A 242 TYR THR LYS GLN GLY TYR GLU VAL GLY ILE CYS ASP LEU SEQRES 4 A 242 THR GLU ALA ASP LEU SER SER ASN GLY THR ILE GLU LEU SEQRES 5 A 242 ARG LYS GLU GLU ALA LYS VAL ALA ALA ARG ILE MET GLY SEQRES 6 A 242 VAL LYS THR ARG LEU ASN LEU ALA MET PRO ASP ARG GLY SEQRES 7 A 242 LEU TYR MET LYS GLU GLU TYR ILE ARG GLU ILE VAL LYS SEQRES 8 A 242 VAL ILE ARG THR TYR LYS PRO LYS LEU VAL PHE ALA PRO SEQRES 9 A 242 TYR TYR GLU ASP ARG HIS PRO ASP HIS ALA ASN CYS ALA SEQRES 10 A 242 LYS LEU VAL GLU GLU ALA ILE PHE SER ALA GLY ILE ARG SEQRES 11 A 242 LYS TYR MET PRO GLU LEU SER PRO HIS ARG VAL GLU SER SEQRES 12 A 242 PHE TYR ASN TYR MET ILE ASN GLY PHE HIS LYS PRO ASN SEQRES 13 A 242 PHE CYS ILE ASP ILE SER GLU TYR LEU SER ILE LYS VAL SEQRES 14 A 242 GLU ALA LEU GLU ALA TYR GLU SER GLN PHE SER THR GLY SEQRES 15 A 242 SER ASP GLY VAL LYS THR PRO LEU THR GLU GLY TYR VAL SEQRES 16 A 242 GLU THR VAL ILE ALA ARG GLU LYS MET PHE GLY LYS GLU SEQRES 17 A 242 VAL GLY VAL LEU TYR ALA GLU GLY PHE MET SER LYS LYS SEQRES 18 A 242 PRO VAL LEU LEU HIS ALA ASP LEU LEU GLY GLY CYS LYS SEQRES 19 A 242 LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 242 MET SER GLY LEU HIS ILE LEU ALA PHE GLY ALA HIS ALA SEQRES 2 B 242 ASP ASP VAL GLU ILE GLY MET ALA GLY THR ILE ALA LYS SEQRES 3 B 242 TYR THR LYS GLN GLY TYR GLU VAL GLY ILE CYS ASP LEU SEQRES 4 B 242 THR GLU ALA ASP LEU SER SER ASN GLY THR ILE GLU LEU SEQRES 5 B 242 ARG LYS GLU GLU ALA LYS VAL ALA ALA ARG ILE MET GLY SEQRES 6 B 242 VAL LYS THR ARG LEU ASN LEU ALA MET PRO ASP ARG GLY SEQRES 7 B 242 LEU TYR MET LYS GLU GLU TYR ILE ARG GLU ILE VAL LYS SEQRES 8 B 242 VAL ILE ARG THR TYR LYS PRO LYS LEU VAL PHE ALA PRO SEQRES 9 B 242 TYR TYR GLU ASP ARG HIS PRO ASP HIS ALA ASN CYS ALA SEQRES 10 B 242 LYS LEU VAL GLU GLU ALA ILE PHE SER ALA GLY ILE ARG SEQRES 11 B 242 LYS TYR MET PRO GLU LEU SER PRO HIS ARG VAL GLU SER SEQRES 12 B 242 PHE TYR ASN TYR MET ILE ASN GLY PHE HIS LYS PRO ASN SEQRES 13 B 242 PHE CYS ILE ASP ILE SER GLU TYR LEU SER ILE LYS VAL SEQRES 14 B 242 GLU ALA LEU GLU ALA TYR GLU SER GLN PHE SER THR GLY SEQRES 15 B 242 SER ASP GLY VAL LYS THR PRO LEU THR GLU GLY TYR VAL SEQRES 16 B 242 GLU THR VAL ILE ALA ARG GLU LYS MET PHE GLY LYS GLU SEQRES 17 B 242 VAL GLY VAL LEU TYR ALA GLU GLY PHE MET SER LYS LYS SEQRES 18 B 242 PRO VAL LEU LEU HIS ALA ASP LEU LEU GLY GLY CYS LYS SEQRES 19 B 242 LEU GLY HIS HIS HIS HIS HIS HIS HET ZN A1234 1 HET ACT A1235 4 HET ZN B1232 1 HET ACT B1233 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *471(H2 O) HELIX 1 1 ASP A 14 GLN A 30 1 17 HELIX 2 2 THR A 49 GLY A 65 1 17 HELIX 3 3 LYS A 82 LYS A 97 1 16 HELIX 4 4 HIS A 110 GLY A 128 1 19 HELIX 5 5 TYR A 164 ALA A 174 1 11 HELIX 6 6 TYR A 175 SER A 180 1 6 HELIX 7 7 GLY A 193 VAL A 209 1 17 HELIX 8 8 ASP B 14 GLN B 30 1 17 HELIX 9 9 THR B 49 GLY B 65 1 17 HELIX 10 10 LYS B 82 LYS B 97 1 16 HELIX 11 11 HIS B 110 GLY B 128 1 19 HELIX 12 12 TYR B 164 ALA B 174 1 11 HELIX 13 13 TYR B 175 SER B 180 1 6 HELIX 14 14 GLY B 193 VAL B 209 1 17 SHEET 1 AA 8 THR A 68 MET A 74 0 SHEET 2 AA 8 VAL A 34 THR A 40 1 O VAL A 34 N THR A 68 SHEET 3 AA 8 ILE A 6 GLY A 10 1 O ILE A 6 N GLY A 35 SHEET 4 AA 8 LEU A 100 PRO A 104 1 O LEU A 100 N LEU A 7 SHEET 5 AA 8 SER A 143 TYR A 147 1 O SER A 143 N VAL A 101 SHEET 6 AA 8 ALA A 214 SER A 219 -1 O MET A 218 N ASN A 146 SHEET 7 AA 8 PHE A 157 ASP A 160 -1 O PHE A 157 N PHE A 217 SHEET 8 AA 8 VAL B 223 LEU B 225 1 O VAL B 223 N CYS A 158 SHEET 1 AB 8 VAL A 223 LEU A 225 0 SHEET 2 AB 8 PHE B 157 ASP B 160 1 O CYS B 158 N LEU A 225 SHEET 3 AB 8 ALA B 214 MET B 218 -1 O GLU B 215 N ILE B 159 SHEET 4 AB 8 SER B 143 TYR B 147 -1 O ASN B 146 N MET B 218 SHEET 5 AB 8 LEU B 100 PRO B 104 1 O VAL B 101 N TYR B 145 SHEET 6 AB 8 ILE B 6 GLY B 10 1 O LEU B 7 N PHE B 102 SHEET 7 AB 8 VAL B 34 THR B 40 1 O GLY B 35 N ALA B 8 SHEET 8 AB 8 THR B 68 MET B 74 1 O THR B 68 N ILE B 36 LINK ND1 HIS A 12 ZN ZN A1234 1555 1555 2.07 LINK OD1 ASP A 15 ZN ZN A1234 1555 1555 1.98 LINK OD2 ASP A 15 ZN ZN A1234 1555 1555 2.77 LINK NE2 HIS A 113 ZN ZN A1234 1555 1555 2.07 LINK ZN ZN A1234 O ACT A1235 1555 1555 2.58 LINK ZN ZN A1234 OXT ACT A1235 1555 1555 1.99 LINK ND1 HIS B 12 ZN ZN B1232 1555 1555 2.07 LINK OD1 ASP B 15 ZN ZN B1232 1555 1555 2.71 LINK OD2 ASP B 15 ZN ZN B1232 1555 1555 1.97 LINK NE2 HIS B 113 ZN ZN B1232 1555 1555 2.06 LINK ZN ZN B1232 OXT ACT B1233 1555 1555 2.55 LINK ZN ZN B1232 O ACT B1233 1555 1555 1.99 SITE 1 AC1 4 HIS A 12 ASP A 15 HIS A 113 ACT A1235 SITE 1 AC2 8 HIS A 12 ASP A 14 ASP A 15 ARG A 53 SITE 2 AC2 8 HIS A 113 LEU A 190 ZN A1234 HOH A2237 SITE 1 AC3 4 HIS B 12 ASP B 15 HIS B 113 ACT B1233 SITE 1 AC4 8 HIS B 12 ASP B 14 ASP B 15 ARG B 53 SITE 2 AC4 8 HIS B 113 LEU B 190 ZN B1232 HOH B2234 CRYST1 75.892 75.892 404.699 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013177 0.007608 0.000000 0.00000 SCALE2 0.000000 0.015215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002471 0.00000 MTRIX1 1 0.944180 -0.329140 0.013470 12.38713 1 MTRIX2 1 -0.329290 -0.944160 0.011190 83.63430 1 MTRIX3 1 0.009030 -0.015000 -0.999850 338.22656 1