data_2IY3 # _entry.id 2IY3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IY3 PDBE EBI-29361 WWPDB D_1290029361 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-1250 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details 'STRUCTURE OF THE E. COLI SIGNAL RECOGNITION PARTICLE BOUND TO A TRANSLATING RIBOSOME VOLUME DATA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IY3 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-07-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schaffitzel, C.' 1 'Oswald, M.' 2 'Berger, I.' 3 'Ishikawa, T.' 4 'Abrahams, J.P.' 5 'Koerten, H.K.' 6 'Koning, R.I.' 7 'Ban, N.' 8 # _citation.id primary _citation.title 'Structure of the E. Coli Signal Recognition Particle Bound to a Translating Ribosome' _citation.journal_abbrev Nature _citation.journal_volume 444 _citation.page_first 503 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17086205 _citation.pdbx_database_id_DOI 10.1038/NATURE05182 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schaffitzel, C.' 1 primary 'Oswald, M.' 2 primary 'Berger, I.' 3 primary 'Ishikawa, T.' 4 primary 'Abrahams, J.P.' 5 primary 'Koerten, H.K.' 6 primary 'Koning, R.I.' 7 primary 'Ban, N.' 8 # _cell.entry_id 2IY3 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IY3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Signal recognition particle protein,Signal recognition particle 54 kDa protein' 48274.094 1 ? ? ? ? 2 polymer syn '4.5S RNA' 35547.090 1 ? ? ? ? 3 polymer syn 'SIGNAL SEQUENCE' 1380.632 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Fifty-four homolog,SRP54' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE ALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDIESILEKVKGLEEYDKIQKKMEDV MEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKSRM RRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK ; ;MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE ALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDIESILEKVKGLEEYDKIQKKMEDV MEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKSRM RRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK ; A ? 2 polyribonucleotide no no ;GGGGGCUCUGUUGGUUCUCCCGCAACGCUACUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAUGACGC GUGUGCCGGGAUGUAGCUGGCAGGGCCCCC ; ;GGGGGCUCUGUUGGUUCUCCCGCAACGCUACUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAUGACGC GUGUGCCGGGAUGUAGCUGGCAGGGCCCCC ; B ? 3 'polypeptide(L)' no no AALALAAAAALALAAAG AALALAAAAALALAAAG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLN n 1 4 GLN n 1 5 LEU n 1 6 SER n 1 7 ALA n 1 8 ARG n 1 9 LEU n 1 10 GLN n 1 11 GLU n 1 12 ALA n 1 13 ILE n 1 14 GLY n 1 15 ARG n 1 16 LEU n 1 17 ARG n 1 18 GLY n 1 19 ARG n 1 20 GLY n 1 21 ARG n 1 22 ILE n 1 23 THR n 1 24 GLU n 1 25 GLU n 1 26 ASP n 1 27 LEU n 1 28 LYS n 1 29 ALA n 1 30 THR n 1 31 LEU n 1 32 ARG n 1 33 GLU n 1 34 ILE n 1 35 ARG n 1 36 ARG n 1 37 ALA n 1 38 LEU n 1 39 MET n 1 40 ASP n 1 41 ALA n 1 42 ASP n 1 43 VAL n 1 44 ASN n 1 45 LEU n 1 46 GLU n 1 47 VAL n 1 48 ALA n 1 49 ARG n 1 50 ASP n 1 51 PHE n 1 52 VAL n 1 53 GLU n 1 54 ARG n 1 55 VAL n 1 56 ARG n 1 57 GLU n 1 58 GLU n 1 59 ALA n 1 60 LEU n 1 61 GLY n 1 62 LYS n 1 63 GLN n 1 64 VAL n 1 65 LEU n 1 66 GLU n 1 67 SER n 1 68 LEU n 1 69 THR n 1 70 PRO n 1 71 ALA n 1 72 GLU n 1 73 VAL n 1 74 ILE n 1 75 LEU n 1 76 ALA n 1 77 THR n 1 78 VAL n 1 79 TYR n 1 80 GLU n 1 81 ALA n 1 82 LEU n 1 83 LYS n 1 84 GLU n 1 85 ALA n 1 86 LEU n 1 87 GLY n 1 88 GLY n 1 89 GLU n 1 90 ALA n 1 91 ARG n 1 92 LEU n 1 93 PRO n 1 94 VAL n 1 95 LEU n 1 96 LYS n 1 97 ASP n 1 98 ARG n 1 99 ASN n 1 100 LEU n 1 101 TRP n 1 102 PHE n 1 103 LEU n 1 104 VAL n 1 105 GLY n 1 106 LEU n 1 107 GLN n 1 108 GLY n 1 109 SER n 1 110 GLY n 1 111 LYS n 1 112 THR n 1 113 THR n 1 114 THR n 1 115 ALA n 1 116 ALA n 1 117 LYS n 1 118 LEU n 1 119 ALA n 1 120 LEU n 1 121 TYR n 1 122 TYR n 1 123 LYS n 1 124 GLY n 1 125 LYS n 1 126 GLY n 1 127 ARG n 1 128 ARG n 1 129 PRO n 1 130 LEU n 1 131 LEU n 1 132 VAL n 1 133 ALA n 1 134 ALA n 1 135 ASP n 1 136 THR n 1 137 GLN n 1 138 ARG n 1 139 PRO n 1 140 ALA n 1 141 ALA n 1 142 ARG n 1 143 GLU n 1 144 GLN n 1 145 LEU n 1 146 ARG n 1 147 LEU n 1 148 LEU n 1 149 GLY n 1 150 GLU n 1 151 LYS n 1 152 VAL n 1 153 GLY n 1 154 VAL n 1 155 PRO n 1 156 VAL n 1 157 LEU n 1 158 GLU n 1 159 VAL n 1 160 MET n 1 161 ASP n 1 162 GLY n 1 163 GLU n 1 164 SER n 1 165 PRO n 1 166 GLU n 1 167 SER n 1 168 ILE n 1 169 ARG n 1 170 ARG n 1 171 ARG n 1 172 VAL n 1 173 GLU n 1 174 GLU n 1 175 LYS n 1 176 ALA n 1 177 ARG n 1 178 LEU n 1 179 GLU n 1 180 ALA n 1 181 ARG n 1 182 ASP n 1 183 LEU n 1 184 ILE n 1 185 LEU n 1 186 VAL n 1 187 ASP n 1 188 THR n 1 189 ALA n 1 190 GLY n 1 191 ARG n 1 192 LEU n 1 193 GLN n 1 194 ILE n 1 195 ASP n 1 196 GLU n 1 197 PRO n 1 198 LEU n 1 199 MET n 1 200 GLY n 1 201 GLU n 1 202 LEU n 1 203 ALA n 1 204 ARG n 1 205 LEU n 1 206 LYS n 1 207 GLU n 1 208 VAL n 1 209 LEU n 1 210 GLY n 1 211 PRO n 1 212 ASP n 1 213 GLU n 1 214 VAL n 1 215 LEU n 1 216 LEU n 1 217 VAL n 1 218 LEU n 1 219 ASP n 1 220 ALA n 1 221 MET n 1 222 THR n 1 223 GLY n 1 224 GLN n 1 225 GLU n 1 226 ALA n 1 227 LEU n 1 228 SER n 1 229 VAL n 1 230 ALA n 1 231 ARG n 1 232 ALA n 1 233 PHE n 1 234 ASP n 1 235 GLU n 1 236 LYS n 1 237 VAL n 1 238 GLY n 1 239 VAL n 1 240 THR n 1 241 GLY n 1 242 LEU n 1 243 VAL n 1 244 LEU n 1 245 THR n 1 246 LYS n 1 247 LEU n 1 248 ASP n 1 249 GLY n 1 250 ASP n 1 251 ALA n 1 252 ARG n 1 253 GLY n 1 254 GLY n 1 255 ALA n 1 256 ALA n 1 257 LEU n 1 258 SER n 1 259 ALA n 1 260 ARG n 1 261 HIS n 1 262 VAL n 1 263 THR n 1 264 GLY n 1 265 LYS n 1 266 PRO n 1 267 ILE n 1 268 TYR n 1 269 PHE n 1 270 ALA n 1 271 GLY n 1 272 VAL n 1 273 SER n 1 274 GLU n 1 275 LYS n 1 276 PRO n 1 277 GLU n 1 278 GLY n 1 279 LEU n 1 280 GLU n 1 281 PRO n 1 282 PHE n 1 283 TYR n 1 284 PRO n 1 285 GLU n 1 286 ARG n 1 287 LEU n 1 288 ALA n 1 289 GLY n 1 290 ARG n 1 291 ILE n 1 292 LEU n 1 293 GLY n 1 294 MET n 1 295 GLY n 1 296 ASP n 1 297 ILE n 1 298 GLU n 1 299 SER n 1 300 ILE n 1 301 LEU n 1 302 GLU n 1 303 LYS n 1 304 VAL n 1 305 LYS n 1 306 GLY n 1 307 LEU n 1 308 GLU n 1 309 GLU n 1 310 TYR n 1 311 ASP n 1 312 LYS n 1 313 ILE n 1 314 GLN n 1 315 LYS n 1 316 LYS n 1 317 MET n 1 318 GLU n 1 319 ASP n 1 320 VAL n 1 321 MET n 1 322 GLU n 1 323 GLY n 1 324 LYS n 1 325 GLY n 1 326 LYS n 1 327 LEU n 1 328 THR n 1 329 LEU n 1 330 ARG n 1 331 ASP n 1 332 VAL n 1 333 TYR n 1 334 ALA n 1 335 GLN n 1 336 ILE n 1 337 ILE n 1 338 ALA n 1 339 LEU n 1 340 ARG n 1 341 LYS n 1 342 MET n 1 343 GLY n 1 344 PRO n 1 345 LEU n 1 346 SER n 1 347 LYS n 1 348 VAL n 1 349 LEU n 1 350 GLN n 1 351 HIS n 1 352 ILE n 1 353 PRO n 1 354 GLY n 1 355 LEU n 1 356 GLY n 1 357 ILE n 1 358 MET n 1 359 LEU n 1 360 PRO n 1 361 THR n 1 362 PRO n 1 363 SER n 1 364 GLU n 1 365 ASP n 1 366 GLN n 1 367 LEU n 1 368 LYS n 1 369 ILE n 1 370 GLY n 1 371 GLU n 1 372 GLU n 1 373 LYS n 1 374 ILE n 1 375 ARG n 1 376 ARG n 1 377 TRP n 1 378 LEU n 1 379 ALA n 1 380 ALA n 1 381 LEU n 1 382 ASN n 1 383 SER n 1 384 MET n 1 385 THR n 1 386 TYR n 1 387 LYS n 1 388 GLU n 1 389 LEU n 1 390 GLU n 1 391 ASN n 1 392 PRO n 1 393 ASN n 1 394 ILE n 1 395 ILE n 1 396 ASP n 1 397 LYS n 1 398 SER n 1 399 ARG n 1 400 MET n 1 401 ARG n 1 402 ARG n 1 403 ILE n 1 404 ALA n 1 405 GLU n 1 406 GLY n 1 407 SER n 1 408 GLY n 1 409 LEU n 1 410 GLU n 1 411 VAL n 1 412 GLU n 1 413 GLU n 1 414 VAL n 1 415 ARG n 1 416 GLU n 1 417 LEU n 1 418 LEU n 1 419 GLU n 1 420 TRP n 1 421 TYR n 1 422 ASN n 1 423 ASN n 1 424 MET n 1 425 ASN n 1 426 ARG n 1 427 LEU n 1 428 LEU n 1 429 LYS n 1 430 MET n 1 431 VAL n 1 432 LYS n 2 1 G n 2 2 G n 2 3 G n 2 4 G n 2 5 G n 2 6 C n 2 7 U n 2 8 C n 2 9 U n 2 10 G n 2 11 U n 2 12 U n 2 13 G n 2 14 G n 2 15 U n 2 16 U n 2 17 C n 2 18 U n 2 19 C n 2 20 C n 2 21 C n 2 22 G n 2 23 C n 2 24 A n 2 25 A n 2 26 C n 2 27 G n 2 28 C n 2 29 U n 2 30 A n 2 31 C n 2 32 U n 2 33 C n 2 34 U n 2 35 G n 2 36 U n 2 37 U n 2 38 U n 2 39 A n 2 40 C n 2 41 C n 2 42 A n 2 43 G n 2 44 G n 2 45 U n 2 46 C n 2 47 A n 2 48 G n 2 49 G n 2 50 U n 2 51 C n 2 52 C n 2 53 G n 2 54 A n 2 55 A n 2 56 A n 2 57 G n 2 58 G n 2 59 A n 2 60 A n 2 61 G n 2 62 C n 2 63 A n 2 64 G n 2 65 C n 2 66 C n 2 67 A n 2 68 A n 2 69 G n 2 70 G n 2 71 C n 2 72 A n 2 73 G n 2 74 A n 2 75 U n 2 76 G n 2 77 A n 2 78 C n 2 79 G n 2 80 C n 2 81 G n 2 82 U n 2 83 G n 2 84 U n 2 85 G n 2 86 C n 2 87 C n 2 88 G n 2 89 G n 2 90 G n 2 91 A n 2 92 U n 2 93 G n 2 94 U n 2 95 A n 2 96 G n 2 97 C n 2 98 U n 2 99 G n 2 100 G n 2 101 C n 2 102 A n 2 103 G n 2 104 G n 2 105 G n 2 106 C n 2 107 C n 2 108 C n 2 109 C n 2 110 C n 3 1 ALA n 3 2 ALA n 3 3 LEU n 3 4 ALA n 3 5 LEU n 3 6 ALA n 3 7 ALA n 3 8 ALA n 3 9 ALA n 3 10 ALA n 3 11 LEU n 3 12 ALA n 3 13 LEU n 3 14 ALA n 3 15 ALA n 3 16 ALA n 3 17 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 296 ? ? ffh ? ? ? ? ? ? 'Thermus aquaticus' 271 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? PET24A_FFH ? ? 1 2 sample 'Biological sequence' 297 432 ? ? 'srp54, SULA_1982, SULB_1983, SULC_1981' ? ? ? ? ? ? 'Sulfolobus solfataricus' 2287 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? PET24A_FFH ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 110 'Escherichia coli' ? 562 ? 3 1 sample 1 17 ' synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SRP54_THEAQ O07347 ? 1 ;MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE ALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD ; 1 2 UNP A0A0E3MG81_SULSF A0A0E3MG81 ? 1 ;IESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRR WLAALNSMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK ; 297 3 GB LT615377.1 1126835767 ? 2 ;GGGGGCUCUGUUGGUUCUCCCGCAACGCUACUCUGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGAUGACGC GUGUGCCGGGAUGUAGCUGGCAGGGCCCCC ; 475747 4 PDB 2IY3 2IY3 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IY3 A 1 ? 296 ? O07347 1 ? 296 ? 1 296 2 2 2IY3 A 297 ? 432 ? A0A0E3MG81 297 ? 432 ? 297 432 3 3 2IY3 B 1 ? 110 ? 1126835767 475747 ? 475856 ? 1 110 4 4 2IY3 C 1 ? 17 ? 2IY3 450 ? 466 ? 450 466 # _struct_ref_seq_dif.align_id 3 _struct_ref_seq_dif.pdbx_pdb_id_code 2IY3 _struct_ref_seq_dif.mon_id A _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 54 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 1126835767 _struct_ref_seq_dif.db_mon_id G _struct_ref_seq_dif.pdbx_seq_db_seq_num 475800 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 54 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IY3 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 2IY3 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 16.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 449 _refine_hist.pdbx_number_atoms_nucleic_acid 110 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 559 _refine_hist.d_res_high 16.00 _refine_hist.d_res_low . # _struct.entry_id 2IY3 _struct.title 'Structure of the E. Coli Signal Regognition Particle' _struct.pdbx_descriptor 'SIGNAL RECOGNITION PARTICLE PROTEIN FFH, SIGNAL SEQUENCE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'CA ATOMS ONLY, CHAIN A, C ; P ATOMS ONLY, CHAIN B' # _struct_keywords.entry_id 2IY3 _struct_keywords.pdbx_keywords RNA-BINDING _struct_keywords.text 'RNA-BINDING, RNA-BINDING PROTEIN COMPLEX, SIGNAL RECOGNITION PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _database_PDB_matrix.entry_id 2IY3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IY3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 GLN 144 144 144 GLN GLN A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 ARG 181 181 181 ARG ARG A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 PRO 197 197 197 PRO PRO A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 MET 199 199 199 MET MET A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 ARG 204 204 204 ARG ARG A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLY 210 210 210 GLY GLY A . n A 1 211 PRO 211 211 211 PRO PRO A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 ALA 232 232 232 ALA ALA A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 ASP 234 234 234 ASP ASP A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 THR 240 240 240 THR THR A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 LYS 246 246 246 LYS LYS A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 ASP 250 250 250 ASP ASP A . n A 1 251 ALA 251 251 251 ALA ALA A . n A 1 252 ARG 252 252 252 ARG ARG A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ALA 256 256 256 ALA ALA A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 SER 258 258 258 SER SER A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 HIS 261 261 261 HIS HIS A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 PHE 269 269 269 PHE PHE A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 VAL 272 272 272 VAL VAL A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 PRO 276 276 276 PRO PRO A . n A 1 277 GLU 277 277 277 GLU GLU A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 LEU 279 279 279 LEU LEU A . n A 1 280 GLU 280 280 280 GLU GLU A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 PHE 282 282 282 PHE PHE A . n A 1 283 TYR 283 283 283 TYR TYR A . n A 1 284 PRO 284 284 284 PRO PRO A . n A 1 285 GLU 285 285 285 GLU GLU A . n A 1 286 ARG 286 286 286 ARG ARG A . n A 1 287 LEU 287 287 287 LEU LEU A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 GLY 289 289 289 GLY GLY A . n A 1 290 ARG 290 290 290 ARG ARG A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 GLY 293 293 293 GLY GLY A . n A 1 294 MET 294 294 294 MET MET A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 ASP 296 296 296 ASP ASP A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 SER 299 299 299 SER SER A . n A 1 300 ILE 300 300 300 ILE ILE A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 GLU 302 302 302 GLU GLU A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 VAL 304 304 304 VAL VAL A . n A 1 305 LYS 305 305 305 LYS LYS A . n A 1 306 GLY 306 306 306 GLY GLY A . n A 1 307 LEU 307 307 307 LEU LEU A . n A 1 308 GLU 308 308 308 GLU GLU A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 TYR 310 310 310 TYR TYR A . n A 1 311 ASP 311 311 311 ASP ASP A . n A 1 312 LYS 312 312 312 LYS LYS A . n A 1 313 ILE 313 313 313 ILE ILE A . n A 1 314 GLN 314 314 314 GLN GLN A . n A 1 315 LYS 315 315 315 LYS LYS A . n A 1 316 LYS 316 316 316 LYS LYS A . n A 1 317 MET 317 317 317 MET MET A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 ASP 319 319 319 ASP ASP A . n A 1 320 VAL 320 320 320 VAL VAL A . n A 1 321 MET 321 321 321 MET MET A . n A 1 322 GLU 322 322 322 GLU GLU A . n A 1 323 GLY 323 323 323 GLY GLY A . n A 1 324 LYS 324 324 324 LYS LYS A . n A 1 325 GLY 325 325 325 GLY GLY A . n A 1 326 LYS 326 326 326 LYS LYS A . n A 1 327 LEU 327 327 327 LEU LEU A . n A 1 328 THR 328 328 328 THR THR A . n A 1 329 LEU 329 329 329 LEU LEU A . n A 1 330 ARG 330 330 330 ARG ARG A . n A 1 331 ASP 331 331 331 ASP ASP A . n A 1 332 VAL 332 332 332 VAL VAL A . n A 1 333 TYR 333 333 333 TYR TYR A . n A 1 334 ALA 334 334 334 ALA ALA A . n A 1 335 GLN 335 335 335 GLN GLN A . n A 1 336 ILE 336 336 336 ILE ILE A . n A 1 337 ILE 337 337 337 ILE ILE A . n A 1 338 ALA 338 338 338 ALA ALA A . n A 1 339 LEU 339 339 339 LEU LEU A . n A 1 340 ARG 340 340 340 ARG ARG A . n A 1 341 LYS 341 341 341 LYS LYS A . n A 1 342 MET 342 342 342 MET MET A . n A 1 343 GLY 343 343 343 GLY GLY A . n A 1 344 PRO 344 344 344 PRO PRO A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 SER 346 346 346 SER SER A . n A 1 347 LYS 347 347 347 LYS LYS A . n A 1 348 VAL 348 348 348 VAL VAL A . n A 1 349 LEU 349 349 349 LEU LEU A . n A 1 350 GLN 350 350 350 GLN GLN A . n A 1 351 HIS 351 351 351 HIS HIS A . n A 1 352 ILE 352 352 352 ILE ILE A . n A 1 353 PRO 353 353 353 PRO PRO A . n A 1 354 GLY 354 354 354 GLY GLY A . n A 1 355 LEU 355 355 355 LEU LEU A . n A 1 356 GLY 356 356 356 GLY GLY A . n A 1 357 ILE 357 357 357 ILE ILE A . n A 1 358 MET 358 358 358 MET MET A . n A 1 359 LEU 359 359 359 LEU LEU A . n A 1 360 PRO 360 360 360 PRO PRO A . n A 1 361 THR 361 361 361 THR THR A . n A 1 362 PRO 362 362 362 PRO PRO A . n A 1 363 SER 363 363 363 SER SER A . n A 1 364 GLU 364 364 364 GLU GLU A . n A 1 365 ASP 365 365 365 ASP ASP A . n A 1 366 GLN 366 366 366 GLN GLN A . n A 1 367 LEU 367 367 367 LEU LEU A . n A 1 368 LYS 368 368 368 LYS LYS A . n A 1 369 ILE 369 369 369 ILE ILE A . n A 1 370 GLY 370 370 370 GLY GLY A . n A 1 371 GLU 371 371 371 GLU GLU A . n A 1 372 GLU 372 372 372 GLU GLU A . n A 1 373 LYS 373 373 373 LYS LYS A . n A 1 374 ILE 374 374 374 ILE ILE A . n A 1 375 ARG 375 375 375 ARG ARG A . n A 1 376 ARG 376 376 376 ARG ARG A . n A 1 377 TRP 377 377 377 TRP TRP A . n A 1 378 LEU 378 378 378 LEU LEU A . n A 1 379 ALA 379 379 379 ALA ALA A . n A 1 380 ALA 380 380 380 ALA ALA A . n A 1 381 LEU 381 381 381 LEU LEU A . n A 1 382 ASN 382 382 382 ASN ASN A . n A 1 383 SER 383 383 383 SER SER A . n A 1 384 MET 384 384 384 MET MET A . n A 1 385 THR 385 385 385 THR THR A . n A 1 386 TYR 386 386 386 TYR TYR A . n A 1 387 LYS 387 387 387 LYS LYS A . n A 1 388 GLU 388 388 388 GLU GLU A . n A 1 389 LEU 389 389 389 LEU LEU A . n A 1 390 GLU 390 390 390 GLU GLU A . n A 1 391 ASN 391 391 391 ASN ASN A . n A 1 392 PRO 392 392 392 PRO PRO A . n A 1 393 ASN 393 393 393 ASN ASN A . n A 1 394 ILE 394 394 394 ILE ILE A . n A 1 395 ILE 395 395 395 ILE ILE A . n A 1 396 ASP 396 396 396 ASP ASP A . n A 1 397 LYS 397 397 397 LYS LYS A . n A 1 398 SER 398 398 398 SER SER A . n A 1 399 ARG 399 399 399 ARG ARG A . n A 1 400 MET 400 400 400 MET MET A . n A 1 401 ARG 401 401 401 ARG ARG A . n A 1 402 ARG 402 402 402 ARG ARG A . n A 1 403 ILE 403 403 403 ILE ILE A . n A 1 404 ALA 404 404 404 ALA ALA A . n A 1 405 GLU 405 405 405 GLU GLU A . n A 1 406 GLY 406 406 406 GLY GLY A . n A 1 407 SER 407 407 407 SER SER A . n A 1 408 GLY 408 408 408 GLY GLY A . n A 1 409 LEU 409 409 409 LEU LEU A . n A 1 410 GLU 410 410 410 GLU GLU A . n A 1 411 VAL 411 411 411 VAL VAL A . n A 1 412 GLU 412 412 412 GLU GLU A . n A 1 413 GLU 413 413 413 GLU GLU A . n A 1 414 VAL 414 414 414 VAL VAL A . n A 1 415 ARG 415 415 415 ARG ARG A . n A 1 416 GLU 416 416 416 GLU GLU A . n A 1 417 LEU 417 417 417 LEU LEU A . n A 1 418 LEU 418 418 418 LEU LEU A . n A 1 419 GLU 419 419 419 GLU GLU A . n A 1 420 TRP 420 420 420 TRP TRP A . n A 1 421 TYR 421 421 421 TYR TYR A . n A 1 422 ASN 422 422 422 ASN ASN A . n A 1 423 ASN 423 423 423 ASN ASN A . n A 1 424 MET 424 424 424 MET MET A . n A 1 425 ASN 425 425 425 ASN ASN A . n A 1 426 ARG 426 426 426 ARG ARG A . n A 1 427 LEU 427 427 427 LEU LEU A . n A 1 428 LEU 428 428 428 LEU LEU A . n A 1 429 LYS 429 429 429 LYS LYS A . n A 1 430 MET 430 430 430 MET MET A . n A 1 431 VAL 431 431 431 VAL VAL A . n A 1 432 LYS 432 432 432 LYS LYS A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 G 5 5 5 G G B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 C 8 8 8 C C B . n B 2 9 U 9 9 9 U U B . n B 2 10 G 10 10 10 G G B . n B 2 11 U 11 11 11 U U B . n B 2 12 U 12 12 12 U U B . n B 2 13 G 13 13 13 G G B . n B 2 14 G 14 14 14 G G B . n B 2 15 U 15 15 15 U U B . n B 2 16 U 16 16 16 U U B . n B 2 17 C 17 17 17 C C B . n B 2 18 U 18 18 18 U U B . n B 2 19 C 19 19 19 C C B . n B 2 20 C 20 20 20 C C B . n B 2 21 C 21 21 21 C C B . n B 2 22 G 22 22 22 G G B . n B 2 23 C 23 23 23 C C B . n B 2 24 A 24 24 24 A A B . n B 2 25 A 25 25 25 A A B . n B 2 26 C 26 26 26 C C B . n B 2 27 G 27 27 27 G G B . n B 2 28 C 28 28 28 C C B . n B 2 29 U 29 29 29 U U B . n B 2 30 A 30 30 30 A A B . n B 2 31 C 31 31 31 C C B . n B 2 32 U 32 32 32 U U B . n B 2 33 C 33 33 33 C C B . n B 2 34 U 34 34 34 U U B . n B 2 35 G 35 35 35 G G B . n B 2 36 U 36 36 36 U U B . n B 2 37 U 37 37 37 U U B . n B 2 38 U 38 38 38 U U B . n B 2 39 A 39 39 39 A A B . n B 2 40 C 40 40 40 C C B . n B 2 41 C 41 41 41 C C B . n B 2 42 A 42 42 42 A A B . n B 2 43 G 43 43 43 G G B . n B 2 44 G 44 44 44 G G B . n B 2 45 U 45 45 45 U U B . n B 2 46 C 46 46 46 C C B . n B 2 47 A 47 47 47 A A B . n B 2 48 G 48 48 48 G G B . n B 2 49 G 49 49 49 G G B . n B 2 50 U 50 50 50 U U B . n B 2 51 C 51 51 51 C C B . n B 2 52 C 52 52 52 C C B . n B 2 53 G 53 53 53 G G B . n B 2 54 A 54 54 54 A A B . n B 2 55 A 55 55 55 A A B . n B 2 56 A 56 56 56 A A B . n B 2 57 G 57 57 57 G G B . n B 2 58 G 58 58 58 G G B . n B 2 59 A 59 59 59 A A B . n B 2 60 A 60 60 60 A A B . n B 2 61 G 61 61 61 G G B . n B 2 62 C 62 62 62 C C B . n B 2 63 A 63 63 63 A A B . n B 2 64 G 64 64 64 G G B . n B 2 65 C 65 65 65 C C B . n B 2 66 C 66 66 66 C C B . n B 2 67 A 67 67 67 A A B . n B 2 68 A 68 68 68 A A B . n B 2 69 G 69 69 69 G G B . n B 2 70 G 70 70 70 G G B . n B 2 71 C 71 71 71 C C B . n B 2 72 A 72 72 72 A A B . n B 2 73 G 73 73 73 G G B . n B 2 74 A 74 74 74 A A B . n B 2 75 U 75 75 75 U U B . n B 2 76 G 76 76 76 G G B . n B 2 77 A 77 77 77 A A B . n B 2 78 C 78 78 78 C C B . n B 2 79 G 79 79 79 G G B . n B 2 80 C 80 80 80 C C B . n B 2 81 G 81 81 81 G G B . n B 2 82 U 82 82 82 U U B . n B 2 83 G 83 83 83 G G B . n B 2 84 U 84 84 84 U U B . n B 2 85 G 85 85 85 G G B . n B 2 86 C 86 86 86 C C B . n B 2 87 C 87 87 87 C C B . n B 2 88 G 88 88 88 G G B . n B 2 89 G 89 89 89 G G B . n B 2 90 G 90 90 90 G G B . n B 2 91 A 91 91 91 A A B . n B 2 92 U 92 92 92 U U B . n B 2 93 G 93 93 93 G G B . n B 2 94 U 94 94 94 U U B . n B 2 95 A 95 95 95 A A B . n B 2 96 G 96 96 96 G G B . n B 2 97 C 97 97 97 C C B . n B 2 98 U 98 98 98 U U B . n B 2 99 G 99 99 99 G G B . n B 2 100 G 100 100 100 G G B . n B 2 101 C 101 101 101 C C B . n B 2 102 A 102 102 102 A A B . n B 2 103 G 103 103 103 G G B . n B 2 104 G 104 104 104 G G B . n B 2 105 G 105 105 105 G G B . n B 2 106 C 106 106 106 C C B . n B 2 107 C 107 107 107 C C B . n B 2 108 C 108 108 108 C C B . n B 2 109 C 109 109 109 C C B . n B 2 110 C 110 110 110 C C B . n C 3 1 ALA 1 450 450 ALA ALA C . n C 3 2 ALA 2 451 451 ALA ALA C . n C 3 3 LEU 3 452 452 LEU LEU C . n C 3 4 ALA 4 453 453 ALA ALA C . n C 3 5 LEU 5 454 454 LEU LEU C . n C 3 6 ALA 6 455 455 ALA ALA C . n C 3 7 ALA 7 456 456 ALA ALA C . n C 3 8 ALA 8 457 457 ALA ALA C . n C 3 9 ALA 9 458 458 ALA ALA C . n C 3 10 ALA 10 459 459 ALA ALA C . n C 3 11 LEU 11 460 460 LEU LEU C . n C 3 12 ALA 12 461 461 ALA ALA C . n C 3 13 LEU 13 462 462 LEU LEU C . n C 3 14 ALA 14 463 463 ALA ALA C . n C 3 15 ALA 15 464 464 ALA ALA C . n C 3 16 ALA 16 465 465 ALA ALA C . n C 3 17 GLY 17 466 466 GLY GLY C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-02 2 'Structure model' 1 1 2013-08-07 3 'Structure model' 1 2 2017-03-15 4 'Structure model' 1 3 2017-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' Other 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Source and taxonomy' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_3d_fitting 2 4 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_3d_fitting.target_criteria' 2 4 'Structure model' '_em_software.fitting_id' 3 4 'Structure model' '_em_software.image_processing_id' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2IY3 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details 'METHOD--LOCAL CORRELATION REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details 1 1 1JPN ? ? 1 2 1QZW ? ? # _em_3d_reconstruction.entry_id 2IY3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 24382 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 3.81 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 16 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;THE COORDINATES BELOW ARE MADE UP FROM THE FOLLOWING COMPONENTS: FFH NG DOMAIN (RESIDUE 1-296), ORGANISM SCIENTIFIC: THERMUS AQUATICUS (PDB ENTRY 1JPN CHAIN A). FFH M DOMAIN (RESIDUE 297-432), ORANISM SCIENTIFIC: SULFOLOBUS SOLFATARICUS (PDB ENTRY 1QZW CHAIN A). 4.5S RNA (RESIDUE 33- 73), ORGANISM SCIENTIFIC: SULFOLOBUS SOLFATARICUS (PDB ENTRY 1QZW, CHAIN B). 4.5S RNA (RESIDUE 1-32 AND 74-110), ORGANISM SCIENTIFIC: ESCHERICHIA COLI (PDB: SRPDB, ROSENBLAD ET AL, NUCLEIC ACID RES 21, 363-364,12:2003. ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM HEPES-KOH PH 7.5, 100 MM KCL, 25 MM MGCL2, 1 MM DTT,1 MM GTP' _em_buffer.pH 7.5 _em_buffer.details '50 MM HEPES-KOH PH 7.5, 100 MM KCL, 25 MM MGCL2, 1 MM DTT,1 MM GTP' # _em_entity_assembly.id 1 _em_entity_assembly.name 'SRP BOUND TO RIBOSOME' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2IY3 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 251 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 2IY3 _em_imaging.id 1 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.date 2005-06-02 _em_imaging.temperature 77 _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 4500 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 51000 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 2IY3 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'PLUNGED INTO ETHANE' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2IY3 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 2IY3 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # _em_ctf_correction.id 1 _em_ctf_correction.details 'PHASE FLIPPING' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 NOMAD ? 'MODEL FITTING' ? ? ? 1 2 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'P ATOMS ONLY' C 'CA ATOMS ONLY' #