data_2IYI # _entry.id 2IYI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IYI PDBE EBI-29411 WWPDB D_1290029411 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1X0P unspecified 'STRUCTURE OF A CYANOBACTERIAL BLUF PROTEIN, TLL0078' PDB 1YRX unspecified 'STRUCTURE OF A NOVEL PHOTORECEPTOR: THE BLUF DOMAIN OF APPAFROM RHODOBACTER SPHAEROIDES' PDB 2BUN unspecified 'SOLUTION STRUCTURE OF THE BLUF DOMAIN OF APPA 5-125' PDB 2BYC unspecified 'BLRB - A BLUF PROTEIN, DARK STATE STRUCTUREA' PDB 2IYG unspecified 'DARK STATE STRUCTURE OF THE BLUF DOMAIN OF THE THE RHODOBACTERIAL PROTEIN APPA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IYI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-07-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jung, A.' 1 ? 'Reinstein, J.' 2 ? 'Domratcheva, T.' 3 ? 'Shoeman, R.-L.' 4 ? 'Schlichting, I.' 5 ? # _citation.id primary _citation.title 'Crystal structures of the AppA BLUF domain photoreceptor provide insights into blue light-mediated signal transduction.' _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_volume 362 _citation.page_first 717 _citation.page_last 732 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16949615 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.07.024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jung, A.' 1 primary 'Reinstein, J.' 2 primary 'Domratcheva, T.' 3 primary 'Shoeman, R.L.' 4 primary 'Schlichting, I.' 5 # _cell.entry_id 2IYI _cell.length_a 126.400 _cell.length_b 126.400 _cell.length_c 64.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IYI _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'APPA, ANTIREPRESSOR OF PPSR, SENSOR OF BLUE LIGHT' 13919.674 2 ? YES 'BLUF DOMAIN, RESIDUES 1-124' ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 2 ? ? ? ? 3 non-polymer syn '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' 154.251 1 ? ? ? ? 4 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 1 ? ? ? ? 5 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQHDLEADVTMTGSDLVSCSYRSLAAPDLTLRDLLDIVETSQAHNARAQLTGALFYSQGVFFQWLEGRPAAVAEVMTHIQ RDRRHSNVEILAEEPIAKRRFAGWHMQLSCSEADMRSLGLAESR ; _entity_poly.pdbx_seq_one_letter_code_can ;MQHDLEADVTMTGSDLVSCSYRSLAAPDLTLRDLLDIVETSQAHNARAQLTGALFYSQGVFFQWLEGRPAAVAEVMTHIQ RDRRHSNVEILAEEPIAKRRFAGWHMQLSCSEADMRSLGLAESR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 HIS n 1 4 ASP n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 VAL n 1 10 THR n 1 11 MET n 1 12 THR n 1 13 GLY n 1 14 SER n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 SER n 1 19 CYS n 1 20 SER n 1 21 TYR n 1 22 ARG n 1 23 SER n 1 24 LEU n 1 25 ALA n 1 26 ALA n 1 27 PRO n 1 28 ASP n 1 29 LEU n 1 30 THR n 1 31 LEU n 1 32 ARG n 1 33 ASP n 1 34 LEU n 1 35 LEU n 1 36 ASP n 1 37 ILE n 1 38 VAL n 1 39 GLU n 1 40 THR n 1 41 SER n 1 42 GLN n 1 43 ALA n 1 44 HIS n 1 45 ASN n 1 46 ALA n 1 47 ARG n 1 48 ALA n 1 49 GLN n 1 50 LEU n 1 51 THR n 1 52 GLY n 1 53 ALA n 1 54 LEU n 1 55 PHE n 1 56 TYR n 1 57 SER n 1 58 GLN n 1 59 GLY n 1 60 VAL n 1 61 PHE n 1 62 PHE n 1 63 GLN n 1 64 TRP n 1 65 LEU n 1 66 GLU n 1 67 GLY n 1 68 ARG n 1 69 PRO n 1 70 ALA n 1 71 ALA n 1 72 VAL n 1 73 ALA n 1 74 GLU n 1 75 VAL n 1 76 MET n 1 77 THR n 1 78 HIS n 1 79 ILE n 1 80 GLN n 1 81 ARG n 1 82 ASP n 1 83 ARG n 1 84 ARG n 1 85 HIS n 1 86 SER n 1 87 ASN n 1 88 VAL n 1 89 GLU n 1 90 ILE n 1 91 LEU n 1 92 ALA n 1 93 GLU n 1 94 GLU n 1 95 PRO n 1 96 ILE n 1 97 ALA n 1 98 LYS n 1 99 ARG n 1 100 ARG n 1 101 PHE n 1 102 ALA n 1 103 GLY n 1 104 TRP n 1 105 HIS n 1 106 MET n 1 107 GLN n 1 108 LEU n 1 109 SER n 1 110 CYS n 1 111 SER n 1 112 GLU n 1 113 ALA n 1 114 ASP n 1 115 MET n 1 116 ARG n 1 117 SER n 1 118 LEU n 1 119 GLY n 1 120 LEU n 1 121 ALA n 1 122 GLU n 1 123 SER n 1 124 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RHODOBACTER SPHAEROIDES' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1063 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3J677_RHOS4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q3J677 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IYI A 1 ? 124 ? Q3J677 1 ? 124 ? 1 124 2 1 2IYI B 1 ? 124 ? Q3J677 1 ? 124 ? 1 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IYI SER A 20 ? UNP Q3J677 CYS 20 'engineered mutation' 20 1 2 2IYI SER B 20 ? UNP Q3J677 CYS 20 'engineered mutation' 20 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 DTU non-polymer . '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' ? 'C4 H10 O2 S2' 154.251 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IYI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.09 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.080797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 1.080797 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2IYI _reflns.observed_criterion_sigma_I 4.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 6700 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.03 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.25000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.000 _reflns_shell.pdbx_redundancy 7.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2IYI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 6362 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.86 _refine.ls_d_res_high 2.95 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 335 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 49.97 _refine.aniso_B[1][1] 1.93000 _refine.aniso_B[2][2] 1.93000 _refine.aniso_B[3][3] -2.89000 _refine.aniso_B[1][2] 0.96000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.365 _refine.overall_SU_ML 0.288 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 31.133 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1681 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 1807 _refine_hist.d_res_high 2.95 _refine_hist.d_res_low 19.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1795 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.422 1.991 ? 2432 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.299 5.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.216 22.471 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.653 15.000 ? 287 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.692 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 266 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1342 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.232 0.200 ? 866 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.314 0.200 ? 1188 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.149 0.200 ? 91 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.334 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.155 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.534 1.500 ? 1081 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.933 2.000 ? 1689 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.778 3.000 ? 865 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.635 4.500 ? 743 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.95 _refine_ls_shell.d_res_low 3.02 _refine_ls_shell.number_reflns_R_work 452 _refine_ls_shell.R_factor_R_work 0.3000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4240 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2IYI _struct.title 'structure of a light-induced intermediate of the BLUF domain of the rhodobacterial protein AppA' _struct.pdbx_descriptor 'APPA, ANTIREPRESSOR OF PPSR, SENSOR OF BLUE LIGHT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IYI _struct_keywords.pdbx_keywords 'SIGNAL TRANSDUCTION' _struct_keywords.text 'SIGNAL TRANSDUCTION, BLUF' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 30 ? GLN A 49 ? THR A 30 GLN A 49 1 ? 20 HELX_P HELX_P2 2 ARG A 68 ? ASP A 82 ? ARG A 68 ASP A 82 1 ? 15 HELX_P HELX_P3 3 SER A 111 ? GLY A 119 ? SER A 111 GLY A 119 1 ? 9 HELX_P HELX_P4 4 THR B 30 ? ALA B 48 ? THR B 30 ALA B 48 1 ? 19 HELX_P HELX_P5 5 ARG B 68 ? ASP B 82 ? ARG B 68 ASP B 82 1 ? 15 HELX_P HELX_P6 6 SER B 111 ? LEU B 120 ? SER B 111 LEU B 120 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A CYS 19 SG ? ? ? 1_555 D DTU . S1 ? ? A CYS 19 A DTU 1123 1_555 ? ? ? ? ? ? ? 2.055 ? covale2 covale ? ? B CYS 19 SG ? ? ? 1_555 F DTT . S4 ? ? B CYS 19 B DTT 1122 1_555 ? ? ? ? ? ? ? 2.048 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 85 ? PRO A 95 ? HIS A 85 PRO A 95 AA 2 VAL A 17 ? ALA A 25 ? VAL A 17 ALA A 25 AA 3 VAL A 60 ? GLY A 67 ? VAL A 60 GLY A 67 AA 4 THR A 51 ? SER A 57 ? THR A 51 SER A 57 AA 5 GLN A 107 ? SER A 109 ? GLN A 107 SER A 109 BA 1 HIS B 85 ? PRO B 95 ? HIS B 85 PRO B 95 BA 2 VAL B 17 ? ALA B 25 ? VAL B 17 ALA B 25 BA 3 VAL B 60 ? GLY B 67 ? VAL B 60 GLY B 67 BA 4 THR B 51 ? SER B 57 ? THR B 51 SER B 57 BA 5 GLN B 107 ? CYS B 110 ? GLN B 107 CYS B 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 94 ? N GLU A 94 O SER A 18 ? O SER A 18 AA 2 3 N SER A 23 ? N SER A 23 O PHE A 61 ? O PHE A 61 AA 3 4 N GLU A 66 ? N GLU A 66 O THR A 51 ? O THR A 51 AA 4 5 N LEU A 54 ? N LEU A 54 O GLN A 107 ? O GLN A 107 BA 1 2 N GLU B 94 ? N GLU B 94 O SER B 18 ? O SER B 18 BA 2 3 N SER B 23 ? N SER B 23 O PHE B 61 ? O PHE B 61 BA 3 4 N GLU B 66 ? N GLU B 66 O THR B 51 ? O THR B 51 BA 4 5 N LEU B 54 ? N LEU B 54 O GLN B 107 ? O GLN B 107 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE FMN A1122' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE DTU A1123' AC3 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE FMN B1121' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE DTT B1122' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 TYR A 21 ? TYR A 21 . ? 1_555 ? 2 AC1 17 ILE A 37 ? ILE A 37 . ? 1_555 ? 3 AC1 17 THR A 40 ? THR A 40 . ? 1_555 ? 4 AC1 17 SER A 41 ? SER A 41 . ? 1_555 ? 5 AC1 17 HIS A 44 ? HIS A 44 . ? 1_555 ? 6 AC1 17 ASN A 45 ? ASN A 45 . ? 1_555 ? 7 AC1 17 PHE A 61 ? PHE A 61 . ? 1_555 ? 8 AC1 17 GLN A 63 ? GLN A 63 . ? 1_555 ? 9 AC1 17 VAL A 75 ? VAL A 75 . ? 1_555 ? 10 AC1 17 HIS A 78 ? HIS A 78 . ? 1_555 ? 11 AC1 17 ILE A 79 ? ILE A 79 . ? 1_555 ? 12 AC1 17 ASP A 82 ? ASP A 82 . ? 1_555 ? 13 AC1 17 ARG A 84 ? ARG A 84 . ? 1_555 ? 14 AC1 17 HIS A 85 ? HIS A 85 . ? 1_555 ? 15 AC1 17 MET A 106 ? MET A 106 . ? 1_555 ? 16 AC1 17 HOH G . ? HOH A 2020 . ? 1_555 ? 17 AC1 17 LYS B 98 ? LYS B 98 . ? 1_555 ? 18 AC2 3 CYS A 19 ? CYS A 19 . ? 1_555 ? 19 AC2 3 LEU A 91 ? LEU A 91 . ? 1_555 ? 20 AC2 3 GLU A 93 ? GLU A 93 . ? 1_555 ? 21 AC3 17 TYR B 21 ? TYR B 21 . ? 1_555 ? 22 AC3 17 ILE B 37 ? ILE B 37 . ? 1_555 ? 23 AC3 17 THR B 40 ? THR B 40 . ? 1_555 ? 24 AC3 17 SER B 41 ? SER B 41 . ? 1_555 ? 25 AC3 17 HIS B 44 ? HIS B 44 . ? 1_555 ? 26 AC3 17 ASN B 45 ? ASN B 45 . ? 1_555 ? 27 AC3 17 PHE B 61 ? PHE B 61 . ? 1_555 ? 28 AC3 17 GLN B 63 ? GLN B 63 . ? 1_555 ? 29 AC3 17 VAL B 75 ? VAL B 75 . ? 1_555 ? 30 AC3 17 HIS B 78 ? HIS B 78 . ? 1_555 ? 31 AC3 17 ILE B 79 ? ILE B 79 . ? 1_555 ? 32 AC3 17 ASP B 82 ? ASP B 82 . ? 1_555 ? 33 AC3 17 ARG B 84 ? ARG B 84 . ? 1_555 ? 34 AC3 17 HIS B 85 ? HIS B 85 . ? 1_555 ? 35 AC3 17 MET B 106 ? MET B 106 . ? 1_555 ? 36 AC3 17 HOH H . ? HOH B 2026 . ? 1_555 ? 37 AC3 17 HOH H . ? HOH B 2027 . ? 1_555 ? 38 AC4 6 CYS B 19 ? CYS B 19 . ? 1_555 ? 39 AC4 6 ALA B 70 ? ALA B 70 . ? 1_555 ? 40 AC4 6 MET B 76 ? MET B 76 . ? 1_555 ? 41 AC4 6 LEU B 91 ? LEU B 91 . ? 1_555 ? 42 AC4 6 GLU B 93 ? GLU B 93 . ? 1_555 ? 43 AC4 6 HOH H . ? HOH B 2028 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IYI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IYI _atom_sites.fract_transf_matrix[1][1] 0.007911 _atom_sites.fract_transf_matrix[1][2] 0.004568 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009135 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015408 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 ASP 8 8 ? ? ? A . n A 1 9 VAL 9 9 ? ? ? A . n A 1 10 THR 10 10 ? ? ? A . n A 1 11 MET 11 11 ? ? ? A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 GLY 13 13 ? ? ? A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 MET 106 106 106 MET MET A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 MET 115 115 115 MET MET A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 GLU 122 122 ? ? ? A . n A 1 123 SER 123 123 ? ? ? A . n A 1 124 ARG 124 124 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 GLN 2 2 ? ? ? B . n B 1 3 HIS 3 3 ? ? ? B . n B 1 4 ASP 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 GLU 6 6 ? ? ? B . n B 1 7 ALA 7 7 ? ? ? B . n B 1 8 ASP 8 8 ? ? ? B . n B 1 9 VAL 9 9 ? ? ? B . n B 1 10 THR 10 10 ? ? ? B . n B 1 11 MET 11 11 ? ? ? B . n B 1 12 THR 12 12 ? ? ? B . n B 1 13 GLY 13 13 ? ? ? B . n B 1 14 SER 14 14 ? ? ? B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 PRO 27 27 27 PRO PRO B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ARG 32 32 32 ARG ARG B . n B 1 33 ASP 33 33 33 ASP ASP B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 ASP 36 36 36 ASP ASP B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 GLN 42 42 42 GLN GLN B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 HIS 44 44 44 HIS HIS B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 PHE 55 55 55 PHE PHE B . n B 1 56 TYR 56 56 56 TYR TYR B . n B 1 57 SER 57 57 57 SER SER B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 GLY 59 59 59 GLY GLY B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 PHE 61 61 61 PHE PHE B . n B 1 62 PHE 62 62 62 PHE PHE B . n B 1 63 GLN 63 63 63 GLN GLN B . n B 1 64 TRP 64 64 64 TRP TRP B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 PRO 69 69 69 PRO PRO B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 MET 76 76 76 MET MET B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 HIS 78 78 78 HIS HIS B . n B 1 79 ILE 79 79 79 ILE ILE B . n B 1 80 GLN 80 80 80 GLN GLN B . n B 1 81 ARG 81 81 81 ARG ARG B . n B 1 82 ASP 82 82 82 ASP ASP B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 ARG 84 84 84 ARG ARG B . n B 1 85 HIS 85 85 85 HIS HIS B . n B 1 86 SER 86 86 86 SER SER B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 ILE 90 90 90 ILE ILE B . n B 1 91 LEU 91 91 91 LEU LEU B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 GLU 94 94 94 GLU GLU B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 ARG 99 99 99 ARG ARG B . n B 1 100 ARG 100 100 100 ARG ARG B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 TRP 104 104 104 TRP TRP B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 MET 106 106 106 MET MET B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 SER 109 109 109 SER SER B . n B 1 110 CYS 110 110 110 CYS CYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 ALA 113 113 113 ALA ALA B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 MET 115 115 115 MET MET B . n B 1 116 ARG 116 116 116 ARG ARG B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 LEU 118 118 118 LEU LEU B . n B 1 119 GLY 119 119 119 GLY GLY B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 ALA 121 121 ? ? ? B . n B 1 122 GLU 122 122 ? ? ? B . n B 1 123 SER 123 123 ? ? ? B . n B 1 124 ARG 124 124 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN 1 1122 1122 FMN FMN A . D 3 DTU 1 1123 1123 DTU DTU A . E 2 FMN 1 1121 1121 FMN FMN B . F 4 DTT 1 1122 1122 DTT DTT B . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . H 5 HOH 1 2001 2001 HOH HOH B . H 5 HOH 2 2002 2002 HOH HOH B . H 5 HOH 3 2003 2003 HOH HOH B . H 5 HOH 4 2004 2004 HOH HOH B . H 5 HOH 5 2005 2005 HOH HOH B . H 5 HOH 6 2006 2006 HOH HOH B . H 5 HOH 7 2007 2007 HOH HOH B . H 5 HOH 8 2008 2008 HOH HOH B . H 5 HOH 9 2009 2009 HOH HOH B . H 5 HOH 10 2010 2010 HOH HOH B . H 5 HOH 11 2011 2011 HOH HOH B . H 5 HOH 12 2012 2012 HOH HOH B . H 5 HOH 13 2013 2013 HOH HOH B . H 5 HOH 14 2014 2014 HOH HOH B . H 5 HOH 15 2015 2015 HOH HOH B . H 5 HOH 16 2016 2016 HOH HOH B . H 5 HOH 17 2017 2017 HOH HOH B . H 5 HOH 18 2018 2018 HOH HOH B . H 5 HOH 19 2019 2019 HOH HOH B . H 5 HOH 20 2020 2020 HOH HOH B . H 5 HOH 21 2021 2021 HOH HOH B . H 5 HOH 22 2022 2022 HOH HOH B . H 5 HOH 23 2023 2023 HOH HOH B . H 5 HOH 24 2024 2024 HOH HOH B . H 5 HOH 25 2025 2025 HOH HOH B . H 5 HOH 26 2026 2026 HOH HOH B . H 5 HOH 27 2027 2027 HOH HOH B . H 5 HOH 28 2028 2028 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-03-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 3 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.page_last' 3 3 'Structure model' '_citation.pdbx_database_id_DOI' 4 3 'Structure model' '_citation.title' 5 3 'Structure model' '_citation_author.name' 6 3 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 7 3 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 8 3 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 9 3 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 6.4356 35.9954 -0.5142 -0.1937 -0.0827 -0.1159 -0.1112 -0.0381 -0.0392 4.6470 2.9056 4.3910 -2.0671 -0.5031 -0.3877 -0.1291 -0.0168 0.0925 0.2466 -0.0076 0.2253 0.0800 -0.5526 0.1367 'X-RAY DIFFRACTION' 2 ? refined 23.5187 42.8608 5.0863 -0.1904 -0.1714 -0.1306 -0.0498 -0.1031 -0.0276 2.2239 6.1387 5.5555 -0.8401 0.3911 -1.0463 -0.0704 -0.2162 0.1210 0.6958 -0.0832 -0.3175 -0.1193 0.2514 0.1537 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 14 ? ? A 121 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 15 ? ? B 120 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2IYI _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, CYS 20 TO SER ENGINEERED RESIDUE IN CHAIN B, CYS 20 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 69 ? ? -28.98 -65.41 2 1 ALA A 92 ? ? -20.18 114.58 3 1 GLU A 93 ? ? -15.36 96.12 4 1 MET A 106 ? ? -164.24 72.42 5 1 ILE B 90 ? ? -22.97 76.90 6 1 LEU B 91 ? ? -27.55 121.22 7 1 MET B 106 ? ? -175.39 97.49 8 1 SER B 117 ? ? -50.51 -71.81 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 14 ? CB ? A SER 14 CB 2 1 Y 1 A SER 14 ? OG ? A SER 14 OG 3 1 Y 1 A ALA 121 ? CB ? A ALA 121 CB 4 1 Y 1 B ASP 15 ? CG ? B ASP 15 CG 5 1 Y 1 B ASP 15 ? OD1 ? B ASP 15 OD1 6 1 Y 1 B ASP 15 ? OD2 ? B ASP 15 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 1 Y 1 A ASP 8 ? A ASP 8 9 1 Y 1 A VAL 9 ? A VAL 9 10 1 Y 1 A THR 10 ? A THR 10 11 1 Y 1 A MET 11 ? A MET 11 12 1 Y 1 A THR 12 ? A THR 12 13 1 Y 1 A GLY 13 ? A GLY 13 14 1 Y 1 A GLU 122 ? A GLU 122 15 1 Y 1 A SER 123 ? A SER 123 16 1 Y 1 A ARG 124 ? A ARG 124 17 1 Y 1 B MET 1 ? B MET 1 18 1 Y 1 B GLN 2 ? B GLN 2 19 1 Y 1 B HIS 3 ? B HIS 3 20 1 Y 1 B ASP 4 ? B ASP 4 21 1 Y 1 B LEU 5 ? B LEU 5 22 1 Y 1 B GLU 6 ? B GLU 6 23 1 Y 1 B ALA 7 ? B ALA 7 24 1 Y 1 B ASP 8 ? B ASP 8 25 1 Y 1 B VAL 9 ? B VAL 9 26 1 Y 1 B THR 10 ? B THR 10 27 1 Y 1 B MET 11 ? B MET 11 28 1 Y 1 B THR 12 ? B THR 12 29 1 Y 1 B GLY 13 ? B GLY 13 30 1 Y 1 B SER 14 ? B SER 14 31 1 Y 1 B ALA 121 ? B ALA 121 32 1 Y 1 B GLU 122 ? B GLU 122 33 1 Y 1 B SER 123 ? B SER 123 34 1 Y 1 B ARG 124 ? B ARG 124 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' DTU 4 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 5 water HOH #