HEADER HYDROLASE 18-JUL-06 2IYK TITLE CRYSTAL STRUCTURE OF THE UPF2-INTERACTING DOMAIN OF NONSENSE MEDIATED TITLE 2 MRNA DECAY FACTOR UPF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UPF2-INTERACTING DOMAIN, RESIDUES 115-272; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE RENT1, NONSENSE MRNA REDUCING FACTOR COMPND 6 1, NORF1, UP-FRAMESHIFT SUPPRESSOR 1 HOMOLOG, HUPF1, UPF1; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CYSTEINE-HISTIDINE RICH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS NMD, ZINC, UPF1, HELICASE, HYDROLASE, ZINC-FINGER, NUCLEOTIDE- KEYWDS 2 BINDING, SURVEILLANCE COMPLEX, NONSENSE-MEDIATED MRNA DECAY, KEYWDS 3 ALTERNATIVE SPLICING, NONSENSE MEDIATED MRNA DECAY, ATP-BINDING, KEYWDS 4 METAL-BINDING, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.KADLEC,D.GUILLIGAY,R.B.RAVELLI,S.CUSACK REVDAT 4 08-MAY-24 2IYK 1 LINK REVDAT 3 24-FEB-09 2IYK 1 VERSN REVDAT 2 04-OCT-06 2IYK 1 JRNL REVDAT 1 30-AUG-06 2IYK 0 JRNL AUTH J.KADLEC,D.GUILLIGAY,R.B.RAVELLI,S.CUSACK JRNL TITL CRYSTAL STRUCTURE OF THE UPF2-INTERACTING DOMAIN OF JRNL TITL 2 NONSENSE-MEDIATED MRNA DECAY FACTOR UPF1. JRNL REF RNA V. 12 1817 2006 JRNL REFN ISSN 1355-8382 JRNL PMID 16931876 JRNL DOI 10.1261/RNA.177606 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 6685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.484 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.521 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2508 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3402 ; 1.229 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.358 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;33.625 ;24.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;17.015 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;26.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1886 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1006 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1687 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 51 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 0.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2502 ; 0.516 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 0.665 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 900 ; 1.156 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 88 1 REMARK 3 1 B 9 B 88 1 REMARK 3 2 A 95 A 104 1 REMARK 3 2 B 95 B 104 1 REMARK 3 3 A 119 A 159 1 REMARK 3 3 B 119 B 159 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1041 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1041 ; 0.05 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2466 -9.2344 8.2527 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.1960 REMARK 3 T33: 0.2361 T12: -0.0532 REMARK 3 T13: -0.0146 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.8576 L22: 3.2056 REMARK 3 L33: 7.6951 L12: -0.3096 REMARK 3 L13: 1.7630 L23: 0.1789 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: 0.0590 S13: -0.0556 REMARK 3 S21: -0.5722 S22: 0.0837 S23: 0.2930 REMARK 3 S31: 0.2920 S32: -0.1861 S33: -0.1507 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3349 -10.3819 20.7306 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2476 REMARK 3 T33: 0.2290 T12: 0.0139 REMARK 3 T13: 0.0060 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.8075 L22: 1.2089 REMARK 3 L33: 3.9314 L12: -0.9494 REMARK 3 L13: 3.1391 L23: -1.1847 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.3233 S13: -0.0360 REMARK 3 S21: -0.1246 S22: -0.0695 S23: -0.2416 REMARK 3 S31: 0.0449 S32: 0.5960 S33: 0.0775 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3260 -1.5322 4.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.2942 T22: 0.1139 REMARK 3 T33: 0.3567 T12: -0.1241 REMARK 3 T13: -0.1720 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 6.9549 L22: 3.8902 REMARK 3 L33: 5.8245 L12: -1.4777 REMARK 3 L13: 1.0864 L23: -1.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: 0.3103 S13: 0.4735 REMARK 3 S21: -0.5230 S22: 0.1565 S23: 0.7307 REMARK 3 S31: -0.0591 S32: -0.4922 S33: -0.0335 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1070 14.6712 8.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.2169 REMARK 3 T33: 0.1903 T12: -0.0051 REMARK 3 T13: -0.0136 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 4.1171 L22: 3.1081 REMARK 3 L33: 5.5344 L12: -0.2115 REMARK 3 L13: -2.0933 L23: 0.9738 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.2359 S13: -0.0484 REMARK 3 S21: 0.0896 S22: 0.1571 S23: -0.0644 REMARK 3 S31: -0.0602 S32: 0.3349 S33: -0.1508 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4854 -1.9810 -3.8898 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.2070 REMARK 3 T33: 0.2273 T12: -0.0083 REMARK 3 T13: -0.0260 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.7841 L22: 4.7026 REMARK 3 L33: 5.4563 L12: -1.8248 REMARK 3 L13: -2.0223 L23: 2.8245 REMARK 3 S TENSOR REMARK 3 S11: -0.1528 S12: -0.0376 S13: -0.4250 REMARK 3 S21: 0.1602 S22: 0.0774 S23: 0.1849 REMARK 3 S31: 0.6419 S32: 0.2942 S33: 0.0753 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 131 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9483 18.2881 11.6759 REMARK 3 T TENSOR REMARK 3 T11: -0.0126 T22: 0.2759 REMARK 3 T33: 0.1528 T12: -0.0039 REMARK 3 T13: 0.0555 T23: -0.0926 REMARK 3 L TENSOR REMARK 3 L11: 5.7387 L22: 7.8251 REMARK 3 L33: 5.4382 L12: -0.1067 REMARK 3 L13: -1.1580 L23: 0.7128 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.4690 S13: 0.5008 REMARK 3 S21: 0.3474 S22: 0.1447 S23: 0.6004 REMARK 3 S31: -0.5389 S32: -0.2690 S33: -0.2366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2821 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PENTAERYTHRITOL ETHOXYLATE REMARK 280 (15/4EO/OH) (V/V), 50 MM AMMONIUM SULPHATE,50 MM BIS-TRIS PH 6.5, REMARK 280 PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PART OF A POST-SPLICING MULTIPROTEIN COMPLEX. INVOLVED REMARK 400 IN NONSENSE-MEDIATED DECAY (NMD) OF MRNAS CONTAINING PREMATURE REMARK 400 STOP CODONS. ESSENTIAL FOR EMBRYONIC VIABILITY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 MET B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 30.50 -99.59 REMARK 500 ASP A 92 147.63 179.19 REMARK 500 SER A 93 70.54 -113.84 REMARK 500 LYS A 110 12.70 55.19 REMARK 500 SER A 117 -3.20 -59.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 109.2 REMARK 620 3 CYS A 35 SG 114.6 109.7 REMARK 620 4 HIS A 45 ND1 116.1 114.3 92.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 SER A 30 OG 85.3 REMARK 620 3 HIS A 49 NE2 107.3 76.9 REMARK 620 4 CYS A 55 SG 113.2 141.5 123.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 76 SG 117.7 REMARK 620 3 CYS A 99 SG 107.3 100.5 REMARK 620 4 CYS A 103 SG 108.9 110.3 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 13 SG REMARK 620 2 CYS B 16 SG 107.5 REMARK 620 3 CYS B 35 SG 117.2 104.7 REMARK 620 4 HIS B 45 ND1 119.7 112.6 94.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 27 SG REMARK 620 2 SER B 30 OG 83.0 REMARK 620 3 HIS B 49 NE2 103.1 71.6 REMARK 620 4 CYS B 55 SG 118.9 141.3 125.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 CYS B 76 SG 118.3 REMARK 620 3 CYS B 99 SG 104.7 99.9 REMARK 620 4 CYS B 103 SG 108.0 114.0 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1165 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FOUR RESIDUES AT THE N-TERMINUS ORIGINATING FROM THE REMARK 999 VECTOR DBREF 2IYK A 1 4 PDB 2IYK 2IYK 1 4 DBREF 2IYK A 5 162 UNP Q92900 RENT1_HUMAN 115 272 DBREF 2IYK B 1 4 PDB 2IYK 2IYK 1 4 DBREF 2IYK B 5 162 UNP Q92900 RENT1_HUMAN 115 272 SEQRES 1 A 162 GLY ALA MET GLY THR LYS ASP LEU PRO ILE HIS ALA CYS SEQRES 2 A 162 SER TYR CYS GLY ILE HIS ASP PRO ALA CYS VAL VAL TYR SEQRES 3 A 162 CYS ASN THR SER LYS LYS TRP PHE CYS ASN GLY ARG GLY SEQRES 4 A 162 ASN THR SER GLY SER HIS ILE VAL ASN HIS LEU VAL ARG SEQRES 5 A 162 ALA LYS CYS LYS GLU VAL THR LEU HIS LYS ASP GLY PRO SEQRES 6 A 162 LEU GLY GLU THR VAL LEU GLU CYS TYR ASN CYS GLY CYS SEQRES 7 A 162 ARG ASN VAL PHE LEU LEU GLY PHE ILE PRO ALA LYS ALA SEQRES 8 A 162 ASP SER VAL VAL VAL LEU LEU CYS ARG GLN PRO CYS ALA SEQRES 9 A 162 SER GLN SER SER LEU LYS ASP ILE ASN TRP ASP SER SER SEQRES 10 A 162 GLN TRP GLN PRO LEU ILE GLN ASP ARG CYS PHE LEU SER SEQRES 11 A 162 TRP LEU VAL LYS ILE PRO SER GLU GLN GLU GLN LEU ARG SEQRES 12 A 162 ALA ARG GLN ILE THR ALA GLN GLN ILE ASN LYS LEU GLU SEQRES 13 A 162 GLU LEU TRP LYS GLU ASN SEQRES 1 B 162 GLY ALA MET GLY THR LYS ASP LEU PRO ILE HIS ALA CYS SEQRES 2 B 162 SER TYR CYS GLY ILE HIS ASP PRO ALA CYS VAL VAL TYR SEQRES 3 B 162 CYS ASN THR SER LYS LYS TRP PHE CYS ASN GLY ARG GLY SEQRES 4 B 162 ASN THR SER GLY SER HIS ILE VAL ASN HIS LEU VAL ARG SEQRES 5 B 162 ALA LYS CYS LYS GLU VAL THR LEU HIS LYS ASP GLY PRO SEQRES 6 B 162 LEU GLY GLU THR VAL LEU GLU CYS TYR ASN CYS GLY CYS SEQRES 7 B 162 ARG ASN VAL PHE LEU LEU GLY PHE ILE PRO ALA LYS ALA SEQRES 8 B 162 ASP SER VAL VAL VAL LEU LEU CYS ARG GLN PRO CYS ALA SEQRES 9 B 162 SER GLN SER SER LEU LYS ASP ILE ASN TRP ASP SER SER SEQRES 10 B 162 GLN TRP GLN PRO LEU ILE GLN ASP ARG CYS PHE LEU SER SEQRES 11 B 162 TRP LEU VAL LYS ILE PRO SER GLU GLN GLU GLN LEU ARG SEQRES 12 B 162 ALA ARG GLN ILE THR ALA GLN GLN ILE ASN LYS LEU GLU SEQRES 13 B 162 GLU LEU TRP LYS GLU ASN HET ZN A1163 1 HET ZN A1164 1 HET ZN A1165 1 HET ZN B1163 1 HET ZN B1164 1 HET ZN B1165 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) HELIX 1 1 SER A 44 ALA A 53 1 10 HELIX 2 2 SER A 105 LYS A 110 1 6 HELIX 3 3 ASP A 115 TRP A 119 5 5 HELIX 4 4 SER A 137 ALA A 144 1 8 HELIX 5 5 THR A 148 GLU A 161 1 14 HELIX 6 6 SER B 44 ALA B 53 1 10 HELIX 7 7 ASP B 115 TRP B 119 5 5 HELIX 8 8 SER B 137 ALA B 144 1 8 HELIX 9 9 THR B 148 GLU B 161 1 14 SHEET 1 AA 3 LYS A 32 CYS A 35 0 SHEET 2 AA 3 VAL A 24 CYS A 27 -1 O VAL A 25 N PHE A 34 SHEET 3 AA 3 VAL A 58 LEU A 60 -1 O THR A 59 N TYR A 26 SHEET 1 AB 3 VAL A 96 CYS A 99 0 SHEET 2 AB 3 LEU A 84 ILE A 87 -1 O GLY A 85 N LEU A 98 SHEET 3 AB 3 GLN A 120 PRO A 121 -1 O GLN A 120 N PHE A 86 SHEET 1 AC 2 ILE A 123 GLN A 124 0 SHEET 2 AC 2 CYS A 127 PHE A 128 -1 O CYS A 127 N GLN A 124 SHEET 1 BA 3 LYS B 32 CYS B 35 0 SHEET 2 BA 3 VAL B 24 CYS B 27 -1 O VAL B 25 N PHE B 34 SHEET 3 BA 3 VAL B 58 LEU B 60 -1 O THR B 59 N TYR B 26 SHEET 1 BB 3 ASP B 92 CYS B 99 0 SHEET 2 BB 3 LEU B 84 ALA B 89 -1 O GLY B 85 N LEU B 98 SHEET 3 BB 3 GLN B 120 PRO B 121 -1 O GLN B 120 N PHE B 86 SHEET 1 BC 2 ILE B 123 GLN B 124 0 SHEET 2 BC 2 CYS B 127 PHE B 128 -1 O CYS B 127 N GLN B 124 LINK SG CYS A 13 ZN ZN A1163 1555 1555 2.22 LINK SG CYS A 16 ZN ZN A1163 1555 1555 2.46 LINK SG CYS A 27 ZN ZN A1164 1555 1555 2.40 LINK OG SER A 30 ZN ZN A1164 1555 1555 2.63 LINK SG CYS A 35 ZN ZN A1163 1555 1555 2.48 LINK ND1 HIS A 45 ZN ZN A1163 1555 1555 2.24 LINK NE2 HIS A 49 ZN ZN A1164 1555 1555 2.16 LINK SG CYS A 55 ZN ZN A1164 1555 1555 2.53 LINK SG CYS A 73 ZN ZN A1165 1555 1555 2.32 LINK SG CYS A 76 ZN ZN A1165 1555 1555 2.49 LINK SG CYS A 99 ZN ZN A1165 1555 1555 2.54 LINK SG CYS A 103 ZN ZN A1165 1555 1555 2.33 LINK SG CYS B 13 ZN ZN B1163 1555 1555 2.38 LINK SG CYS B 16 ZN ZN B1163 1555 1555 2.52 LINK SG CYS B 27 ZN ZN B1164 1555 1555 2.32 LINK OG SER B 30 ZN ZN B1164 1555 1555 2.68 LINK SG CYS B 35 ZN ZN B1163 1555 1555 2.51 LINK ND1 HIS B 45 ZN ZN B1163 1555 1555 2.21 LINK NE2 HIS B 49 ZN ZN B1164 1555 1555 2.32 LINK SG CYS B 55 ZN ZN B1164 1555 1555 2.50 LINK SG CYS B 73 ZN ZN B1165 1555 1555 2.48 LINK SG CYS B 76 ZN ZN B1165 1555 1555 2.43 LINK SG CYS B 99 ZN ZN B1165 1555 1555 2.63 LINK SG CYS B 103 ZN ZN B1165 1555 1555 2.31 CISPEP 1 GLN A 101 PRO A 102 0 -1.13 CISPEP 2 GLN B 101 PRO B 102 0 1.01 SITE 1 AC1 4 CYS A 13 CYS A 16 CYS A 35 HIS A 45 SITE 1 AC2 4 CYS A 27 SER A 30 HIS A 49 CYS A 55 SITE 1 AC3 4 CYS A 73 CYS A 76 CYS A 99 CYS A 103 SITE 1 AC4 4 CYS B 13 CYS B 16 CYS B 35 HIS B 45 SITE 1 AC5 4 CYS B 27 SER B 30 HIS B 49 CYS B 55 SITE 1 AC6 4 CYS B 73 CYS B 76 CYS B 99 CYS B 103 CRYST1 64.560 72.980 73.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013659 0.00000 MTRIX1 1 0.089630 -0.995650 -0.025400 14.87955 1 MTRIX2 1 -0.995620 -0.088890 -0.029020 17.04130 1 MTRIX3 1 0.026630 0.027890 -0.999260 16.57996 1