HEADER TRANSFERASE 22-JUL-06 2IYW TITLE SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH TITLE 2 MGATP, OPEN LID (CONF. B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SK; COMPND 5 EC: 2.7.1.71; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, AROMATIC AMINO ACID BIOSYNTHESIS, P-LOOP KINASE, METAL- KEYWDS 2 BINDING, SHIKIMATE KINASE, SHIKIMATE PATHWAY, NUCLEOTIDE- BINDING, KEYWDS 3 AMINO-ACID BIOSYNTHESIS, KINASE, MAGNESIUM, ATP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HARTMANN,G.P.BOURENKOV,A.OBERSCHALL,N.STRIZHOV,H.D.BARTUNIK REVDAT 4 13-DEC-23 2IYW 1 REMARK LINK REVDAT 3 24-FEB-09 2IYW 1 VERSN REVDAT 2 22-NOV-06 2IYW 1 JRNL REVDAT 1 18-OCT-06 2IYW 0 JRNL AUTH M.D.HARTMANN,G.P.BOURENKOV,A.OBERSCHALL,N.STRIZHOV, JRNL AUTH 2 H.D.BARTUNIK JRNL TITL MECHANISM OF PHOSPHORYL TRANSFER CATALYZED BY SHIKIMATE JRNL TITL 2 KINASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 364 411 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17020768 JRNL DOI 10.1016/J.JMB.2006.09.001 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1423 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1405 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1931 ; 1.322 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3225 ; 3.542 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 4.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;28.550 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;12.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 228 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1551 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 306 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 271 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1312 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 683 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 736 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.140 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 890 ; 1.120 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 368 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ; 2.002 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 533 ; 3.190 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 495 ; 5.389 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14156 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 19.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.550 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2IYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEG 3000, 100MM MES PH 6.5, REMARK 280 PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.29050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 120 CD1 CD2 REMARK 470 HIS A 179 ND1 CD2 CE1 NE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 16 OG REMARK 620 2 ATP A 201 O1G 173.5 REMARK 620 3 ATP A 201 O1B 89.4 87.0 REMARK 620 4 HOH A2010 O 91.5 94.4 97.8 REMARK 620 5 HOH A2197 O 84.0 90.3 86.3 173.9 REMARK 620 6 HOH A2201 O 94.2 88.6 171.9 89.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 MYCOBACTERIUMTUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT REMARK 900 1.8ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1L4Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 MYCOBACTERIUMTUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 REMARK 900 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 1U8A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AND ADP AT 2.15 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 1ZYU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AND AMPPCP AT 2.85ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2G1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE AT REMARK 900 2.0 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2G1K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AT 1.75 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 2IYQ RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE AND ADP REMARK 900 RELATED ID: 2IYR RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE REMARK 900 RELATED ID: 2IYS RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE, OPEN LID (CONF. A) REMARK 900 RELATED ID: 2IYT RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN UNLIGANDED REMARK 900 STATE, OPEN LID (CONF. A) REMARK 900 RELATED ID: 2IYU RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 ADP, OPEN LID (CONF. A) REMARK 900 RELATED ID: 2IYV RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 ADP, OPEN LID (CONF. B) REMARK 900 RELATED ID: 2IYX RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE AND SO4 REMARK 900 RELATED ID: 2IYY RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE-3-PHOSPHATE AND SO4 REMARK 900 RELATED ID: 2IYZ RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE-3-PHOSPHATE AND ADP REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL HIS-TAG DBREF 2IYW A 1 176 UNP P0A4Z2 AROK_MYCTU 1 176 DBREF 2IYW A 177 184 PDB 2IYW 2IYW 177 184 SEQRES 1 A 184 MET ALA PRO LYS ALA VAL LEU VAL GLY LEU PRO GLY SER SEQRES 2 A 184 GLY LYS SER THR ILE GLY ARG ARG LEU ALA LYS ALA LEU SEQRES 3 A 184 GLY VAL GLY LEU LEU ASP THR ASP VAL ALA ILE GLU GLN SEQRES 4 A 184 ARG THR GLY ARG SER ILE ALA ASP ILE PHE ALA THR ASP SEQRES 5 A 184 GLY GLU GLN GLU PHE ARG ARG ILE GLU GLU ASP VAL VAL SEQRES 6 A 184 ARG ALA ALA LEU ALA ASP HIS ASP GLY VAL LEU SER LEU SEQRES 7 A 184 GLY GLY GLY ALA VAL THR SER PRO GLY VAL ARG ALA ALA SEQRES 8 A 184 LEU ALA GLY HIS THR VAL VAL TYR LEU GLU ILE SER ALA SEQRES 9 A 184 ALA GLU GLY VAL ARG ARG THR GLY GLY ASN THR VAL ARG SEQRES 10 A 184 PRO LEU LEU ALA GLY PRO ASP ARG ALA GLU LYS TYR ARG SEQRES 11 A 184 ALA LEU MET ALA LYS ARG ALA PRO LEU TYR ARG ARG VAL SEQRES 12 A 184 ALA THR MET ARG VAL ASP THR ASN ARG ARG ASN PRO GLY SEQRES 13 A 184 ALA VAL VAL ARG HIS ILE LEU SER ARG LEU GLN VAL PRO SEQRES 14 A 184 SER PRO SER GLU ALA ALA THR LEU GLU HIS HIS HIS HIS SEQRES 15 A 184 HIS HIS HET ATP A 201 31 HET MG A 202 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *206(H2 O) HELIX 1 1 GLY A 14 GLY A 27 1 14 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 SER A 44 GLY A 53 1 10 HELIX 4 4 GLY A 53 HIS A 72 1 20 HELIX 5 5 GLY A 81 THR A 84 5 4 HELIX 6 6 SER A 85 ALA A 93 1 9 HELIX 7 7 SER A 103 ARG A 110 1 8 HELIX 8 8 ASP A 124 ALA A 144 1 21 HELIX 9 9 ASN A 154 SER A 164 1 11 HELIX 10 10 SER A 172 GLU A 178 1 7 SHEET 1 AA 5 LEU A 30 ASP A 32 0 SHEET 2 AA 5 VAL A 75 SER A 77 1 O VAL A 75 N LEU A 31 SHEET 3 AA 5 ALA A 5 VAL A 8 1 O ALA A 5 N LEU A 76 SHEET 4 AA 5 VAL A 97 GLU A 101 1 O VAL A 98 N VAL A 8 SHEET 5 AA 5 MET A 146 ASP A 149 1 O MET A 146 N TYR A 99 LINK OG SER A 16 MG MG A 202 1555 1555 2.07 LINK O1G ATP A 201 MG MG A 202 1555 1555 2.05 LINK O1B ATP A 201 MG MG A 202 1555 1555 2.02 LINK MG MG A 202 O HOH A2010 1555 1555 2.05 LINK MG MG A 202 O HOH A2197 1555 1555 2.05 LINK MG MG A 202 O HOH A2201 1555 1555 2.06 SITE 1 AC1 5 SER A 16 ATP A 201 HOH A2010 HOH A2197 SITE 2 AC1 5 HOH A2201 SITE 1 AC2 25 LEU A 10 PRO A 11 GLY A 12 SER A 13 SITE 2 AC2 25 GLY A 14 LYS A 15 SER A 16 THR A 17 SITE 3 AC2 25 ARG A 110 ARG A 153 ASN A 154 PRO A 155 SITE 4 AC2 25 MG A 202 HOH A2010 HOH A2015 HOH A2191 SITE 5 AC2 25 HOH A2195 HOH A2196 HOH A2197 HOH A2198 SITE 6 AC2 25 HOH A2199 HOH A2200 HOH A2201 HOH A2202 SITE 7 AC2 25 HOH A2206 CRYST1 38.970 44.581 51.762 90.00 109.70 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025661 0.000000 0.009189 0.00000 SCALE2 0.000000 0.022431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020521 0.00000