HEADER TRANSFERASE 03-AUG-06 2J0L TITLE CRYSTAL STRUCTURE OF A THE ACTIVE CONFORMATION OF THE KINASE DOMAIN OF TITLE 2 FOCAL ADHESION KINASE WITH A PHOSPHORYLATED ACTIVATION LOOP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 411-686; COMPND 5 SYNONYM: FADK 1, PP125FAK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PHOSPHORYLATED ACTIVATION LOOP (Y576, Y577) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACG2T KEYWDS FOCAL ADHESION, CELL MIGRATION, PHOSPHORYLATION, FERM, KINASE, KEYWDS 2 TRANSFERASE, ATP-BINDING, INTEGRIN SIGNALING, NUCLEOTIDE-BINDING, KEYWDS 3 TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR D.LIETHA,X.CAI,Y.LI,M.D.SCHALLER,M.J.ECK REVDAT 6 13-NOV-24 2J0L 1 REMARK REVDAT 5 13-DEC-23 2J0L 1 REMARK LINK REVDAT 4 03-APR-19 2J0L 1 SOURCE REMARK LINK REVDAT 3 13-JUL-11 2J0L 1 VERSN REVDAT 2 24-FEB-09 2J0L 1 VERSN REVDAT 1 26-JUN-07 2J0L 0 JRNL AUTH D.LIETHA,X.CAI,D.F.J.CECCARELLI,Y.LI,M.D.SCHALLER,M.J.ECK JRNL TITL STRUCTURAL BASIS FOR THE AUTOINHIBITION OF FOCAL ADHESION JRNL TITL 2 KINASE JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 1177 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17574028 JRNL DOI 10.1016/J.CELL.2007.05.041 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 11293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.543 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2259 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3074 ; 1.265 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.059 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.672 ;22.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;15.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1676 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 965 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1539 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.118 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1428 ; 0.723 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2231 ; 0.994 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 967 ; 1.403 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 842 ; 2.160 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 414 A 460 REMARK 3 RESIDUE RANGE : A 483 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3690 10.0890 -0.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: -0.2323 REMARK 3 T33: -0.0073 T12: 0.0410 REMARK 3 T13: -0.0291 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.1282 L22: 3.7603 REMARK 3 L33: 3.7253 L12: -0.0232 REMARK 3 L13: 0.4925 L23: -1.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: 0.0906 S13: 0.1064 REMARK 3 S21: -0.2098 S22: -0.0447 S23: 0.1943 REMARK 3 S31: -0.2758 S32: -0.1552 S33: 0.1502 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 462 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3010 -0.7200 5.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: -0.1525 REMARK 3 T33: 0.0113 T12: -0.0208 REMARK 3 T13: 0.0201 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.8823 L22: 10.4193 REMARK 3 L33: 23.2999 L12: 3.3552 REMARK 3 L13: 7.3846 L23: 10.8468 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.6428 S13: -0.1157 REMARK 3 S21: 0.3109 S22: -0.4628 S23: 0.4291 REMARK 3 S31: 0.6853 S32: -1.0169 S33: 0.4311 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 505 A 567 REMARK 3 RESIDUE RANGE : A 585 A 686 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1340 -5.2380 16.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: -0.2355 REMARK 3 T33: 0.0161 T12: 0.0063 REMARK 3 T13: -0.0294 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.7915 L22: 3.3841 REMARK 3 L33: 1.2930 L12: 0.0906 REMARK 3 L13: -0.0240 L23: -0.9427 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.1302 S13: -0.1597 REMARK 3 S21: 0.0309 S22: 0.0277 S23: -0.1331 REMARK 3 S31: 0.0281 S32: 0.0811 S33: 0.0613 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 582 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5810 -12.3720 16.8630 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: -0.2645 REMARK 3 T33: 0.1456 T12: -0.1472 REMARK 3 T13: -0.1144 T23: 0.3448 REMARK 3 L TENSOR REMARK 3 L11: 50.9646 L22: 87.3964 REMARK 3 L33: 26.2879 L12: -13.6673 REMARK 3 L13: -25.4959 L23: 9.3079 REMARK 3 S TENSOR REMARK 3 S11: -1.7595 S12: -1.0121 S13: -1.9252 REMARK 3 S21: 0.1609 S22: 0.7339 S23: 2.8079 REMARK 3 S31: 2.9738 S32: 1.0479 S33: 1.0257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2J0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290028787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MP8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG4K, 0.2M LISO4, 0.1M TRIS REMARK 280 PH8.5, 10MM TCEP, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.15600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.46950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.90450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.46950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.15600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.90450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 430 CD OE1 OE2 REMARK 480 GLU A 445 CG CD OE1 OE2 REMARK 480 LYS A 457 CE NZ REMARK 480 GLU A 466 CD OE1 OE2 REMARK 480 LYS A 467 CE NZ REMARK 480 GLU A 492 CD OE1 OE2 REMARK 480 ARG A 541 CZ NH1 NH2 REMARK 480 GLU A 572 CG CD OE1 OE2 REMARK 480 LYS A 578 CG CD CE NZ REMARK 480 LYS A 581 CG CD CE NZ REMARK 480 LYS A 583 CG CD CE NZ REMARK 480 ARG A 597 CD NE CZ NH1 NH2 REMARK 480 LYS A 627 CD CE NZ REMARK 480 GLU A 639 CD OE1 OE2 REMARK 480 ASN A 646 CG OD1 ND2 REMARK 480 GLU A 671 CD OE1 OE2 REMARK 480 GLU A 682 CG CD OE1 OE2 REMARK 480 LYS A 684 CE NZ REMARK 480 LEU A 685 CB CG CD1 CD2 REMARK 480 GLN A 686 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 682 O HOH A 2087 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 430 CG GLU A 430 CD -0.192 REMARK 500 ARG A 541 NE ARG A 541 CZ -0.249 REMARK 500 LYS A 627 CG LYS A 627 CD -0.273 REMARK 500 GLU A 639 CG GLU A 639 CD -0.266 REMARK 500 GLU A 671 CG GLU A 671 CD -0.234 REMARK 500 LYS A 684 CD LYS A 684 CE -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 467 CG - CD - CE ANGL. DEV. = 21.4 DEGREES REMARK 500 ARG A 541 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 541 NE - CZ - NH2 ANGL. DEV. = -10.4 DEGREES REMARK 500 GLU A 639 CB - CG - CD ANGL. DEV. = 36.3 DEGREES REMARK 500 GLU A 639 CG - CD - OE1 ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU A 639 CG - CD - OE2 ANGL. DEV. = 13.2 DEGREES REMARK 500 GLU A 671 CB - CG - CD ANGL. DEV. = 24.4 DEGREES REMARK 500 LYS A 684 CG - CD - CE ANGL. DEV. = 40.5 DEGREES REMARK 500 LYS A 684 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 412 108.05 113.59 REMARK 500 PRO A 447 -140.50 -101.11 REMARK 500 ALA A 448 79.09 7.13 REMARK 500 ASN A 458 58.02 -111.93 REMARK 500 ARG A 545 -8.92 78.76 REMARK 500 ASP A 564 82.15 51.86 REMARK 500 GLU A 572 27.52 -68.87 REMARK 500 ASP A 573 -15.25 60.60 REMARK 500 THR A 575 -110.40 58.85 REMARK 500 LYS A 578 -146.29 -86.82 REMARK 500 SER A 580 -89.10 -118.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 541 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1688 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 ASP A 564 OD2 52.4 REMARK 620 3 ANP A1689 O2G 127.5 76.7 REMARK 620 4 ANP A1689 O1B 76.4 74.9 78.7 REMARK 620 5 HOH A2046 O 86.3 88.9 107.1 161.2 REMARK 620 6 HOH A2094 O 98.2 147.6 125.1 85.7 104.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1687 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1688 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A1689 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KTM RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF FAT DOMAIN OF FOCAL ADHESION KINASE REMARK 900 RELATED ID: 1PV3 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE AVIAN FAT- DOMAIN OF FOCALADHESION REMARK 900 KINASE REMARK 900 RELATED ID: 1QVX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FAT DOMAIN OF FOCAL ADHESIONKINASE REMARK 900 RELATED ID: 2AEH RELATED DB: PDB REMARK 900 FOCAL ADHESION KINASE 1 REMARK 900 RELATED ID: 2AL6 RELATED DB: PDB REMARK 900 FERM DOMAIN OF FOCAL ADHESION KINASE REMARK 900 RELATED ID: 2J0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A FRAGMENT OF FOCAL ADHESION KINASE CONTAINING REMARK 900 THE FERM AND KINASE DOMAINS. REMARK 900 RELATED ID: 2J0K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A FRAGMENT OF FOCAL ADHESION KINASE CONTAINING REMARK 900 THE FERM AND KINASE DOMAINS. REMARK 900 RELATED ID: 2J0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE A TWO-CHAIN COMPLEX BETWEEN THE FERM AND KINASE REMARK 900 DOMAINS OF FOCAL ADHESION KINASE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 411-686 DBREF 2J0L A 411 686 UNP Q00944 FAK1_CHICK 411 686 SEQADV 2J0L SER A 556 UNP Q00944 ALA 556 CONFLICT SEQADV 2J0L ASN A 557 UNP Q00944 THR 557 CONFLICT SEQRES 1 A 276 SER THR ARG ASP TYR GLU ILE GLN ARG GLU ARG ILE GLU SEQRES 2 A 276 LEU GLY ARG CYS ILE GLY GLU GLY GLN PHE GLY ASP VAL SEQRES 3 A 276 HIS GLN GLY ILE TYR MET SER PRO GLU ASN PRO ALA MET SEQRES 4 A 276 ALA VAL ALA ILE LYS THR CYS LYS ASN CYS THR SER ASP SEQRES 5 A 276 SER VAL ARG GLU LYS PHE LEU GLN GLU ALA LEU THR MET SEQRES 6 A 276 ARG GLN PHE ASP HIS PRO HIS ILE VAL LYS LEU ILE GLY SEQRES 7 A 276 VAL ILE THR GLU ASN PRO VAL TRP ILE ILE MET GLU LEU SEQRES 8 A 276 CYS THR LEU GLY GLU LEU ARG SER PHE LEU GLN VAL ARG SEQRES 9 A 276 LYS PHE SER LEU ASP LEU ALA SER LEU ILE LEU TYR ALA SEQRES 10 A 276 TYR GLN LEU SER THR ALA LEU ALA TYR LEU GLU SER LYS SEQRES 11 A 276 ARG PHE VAL HIS ARG ASP ILE ALA ALA ARG ASN VAL LEU SEQRES 12 A 276 VAL SER SER ASN ASP CYS VAL LYS LEU GLY ASP PHE GLY SEQRES 13 A 276 LEU SER ARG TYR MET GLU ASP SER THR PTR PTR LYS ALA SEQRES 14 A 276 SER LYS GLY LYS LEU PRO ILE LYS TRP MET ALA PRO GLU SEQRES 15 A 276 SER ILE ASN PHE ARG ARG PHE THR SER ALA SER ASP VAL SEQRES 16 A 276 TRP MET PHE GLY VAL CYS MET TRP GLU ILE LEU MET HIS SEQRES 17 A 276 GLY VAL LYS PRO PHE GLN GLY VAL LYS ASN ASN ASP VAL SEQRES 18 A 276 ILE GLY ARG ILE GLU ASN GLY GLU ARG LEU PRO MET PRO SEQRES 19 A 276 PRO ASN CYS PRO PRO THR LEU TYR SER LEU MET THR LYS SEQRES 20 A 276 CYS TRP ALA TYR ASP PRO SER ARG ARG PRO ARG PHE THR SEQRES 21 A 276 GLU LEU LYS ALA GLN LEU SER THR ILE LEU GLU GLU GLU SEQRES 22 A 276 LYS LEU GLN MODRES 2J0L PTR A 576 TYR O-PHOSPHOTYROSINE MODRES 2J0L PTR A 577 TYR O-PHOSPHOTYROSINE HET PTR A 576 16 HET PTR A 577 16 HET SO4 A1687 5 HET MG A1688 1 HET ANP A1689 31 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 2 SO4 O4 S 2- FORMUL 3 MG MG 2+ FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 HOH *97(H2 O) HELIX 1 1 GLN A 418 GLU A 420 5 3 HELIX 2 2 SER A 461 ARG A 476 1 16 HELIX 3 3 LEU A 507 LYS A 515 1 9 HELIX 4 4 PHE A 516 LEU A 518 5 3 HELIX 5 5 ASP A 519 LYS A 540 1 22 HELIX 6 6 ALA A 548 ARG A 550 5 3 HELIX 7 7 PRO A 585 MET A 589 5 5 HELIX 8 8 ALA A 590 ARG A 597 1 8 HELIX 9 9 THR A 600 MET A 617 1 18 HELIX 10 10 LYS A 627 ASN A 637 1 11 HELIX 11 11 PRO A 648 TRP A 659 1 12 HELIX 12 12 ASP A 662 ARG A 666 5 5 HELIX 13 13 ARG A 668 GLN A 686 1 19 SHEET 1 AA 5 ILE A 422 GLU A 430 0 SHEET 2 AA 5 ASP A 435 TYR A 441 -1 O VAL A 436 N ILE A 428 SHEET 3 AA 5 MET A 449 THR A 455 -1 O MET A 449 N TYR A 441 SHEET 4 AA 5 TRP A 496 GLU A 500 -1 O ILE A 497 N LYS A 454 SHEET 5 AA 5 LEU A 486 ILE A 490 -1 N ILE A 487 O ILE A 498 SHEET 1 AB 3 GLY A 505 GLU A 506 0 SHEET 2 AB 3 VAL A 552 SER A 556 -1 N VAL A 554 O GLY A 505 SHEET 3 AB 3 CYS A 559 LEU A 562 -1 O CYS A 559 N SER A 555 SHEET 1 AC 2 PHE A 542 VAL A 543 0 SHEET 2 AC 2 ARG A 569 TYR A 570 -1 O ARG A 569 N VAL A 543 LINK C THR A 575 N PTR A 576 1555 1555 1.33 LINK C PTR A 576 N PTR A 577 1555 1555 1.33 LINK C PTR A 577 N LYS A 578 1555 1555 1.34 LINK OD1 ASP A 564 MG MG A1688 1555 1555 2.31 LINK OD2 ASP A 564 MG MG A1688 1555 1555 2.60 LINK MG MG A1688 O2G ANP A1689 1555 1555 1.84 LINK MG MG A1688 O1B ANP A1689 1555 1555 2.33 LINK MG MG A1688 O HOH A2046 1555 1555 2.16 LINK MG MG A1688 O HOH A2094 1555 1555 1.92 CISPEP 1 ASN A 493 PRO A 494 0 -6.41 SITE 1 AC1 1 ARG A 508 SITE 1 AC2 4 ASP A 564 ANP A1689 HOH A2046 HOH A2094 SITE 1 AC3 25 ILE A 428 GLU A 430 GLY A 431 GLN A 432 SITE 2 AC3 25 VAL A 436 ALA A 452 LYS A 454 GLU A 500 SITE 3 AC3 25 CYS A 502 GLU A 506 ASN A 551 LEU A 553 SITE 4 AC3 25 ASP A 564 MG A1688 HOH A2010 HOH A2045 SITE 5 AC3 25 HOH A2089 HOH A2090 HOH A2091 HOH A2092 SITE 6 AC3 25 HOH A2093 HOH A2094 HOH A2095 HOH A2096 SITE 7 AC3 25 HOH A2097 CRYST1 44.312 71.809 86.939 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011502 0.00000