HEADER TRANSCRIPTION 08-AUG-06 2J0Z TITLE P53 TETRAMERIZATION DOMAIN WILD TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TETRAMERIZATION DOMAIN, RESIDUES 326-356; COMPND 5 SYNONYM: P53, TUMOR SUPPRESSOR P53, PHOSPHOPROTEIN P53, ANTIGEN NY- COMPND 6 CO-13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS P53, ZINC, ACTIVATOR, APOPTOSIS, WILD TYPE, CELL CYCLE, ACETYLATION, KEYWDS 2 DNA-BINDING, POLYMORPHISM, TETRAMERIZATION DOMAIN, TRANSCRIPTION KEYWDS 3 REGULATION, ANTI-ONCOGENE, NUCLEAR PROTEIN, PHOSPHORYLATION, LI- KEYWDS 4 FRAUMENI SYNDROME, HOST-VIRUS INTERACTION, DISEASE MUTATION, KEYWDS 5 ALTERNATIVE SPLICING, GLYCOPROTEIN, TRANSCRIPTION, METAL-BINDING EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR R.J.CARBAJO,P.MORA,M.M.SANCHEZ DEL PINO,E.PEREZ-PAYA,A.PINEDA-LUCENA REVDAT 4 25-APR-18 2J0Z 1 JRNL REMARK REVDAT 3 24-FEB-09 2J0Z 1 VERSN REVDAT 2 25-DEC-07 2J0Z 1 JRNL ATOM REVDAT 1 28-AUG-07 2J0Z 0 JRNL AUTH P.MORA,R.J.CARBAJO,A.PINEDA-LUCENA,M.M.SANCHEZ DEL PINO, JRNL AUTH 2 E.PEREZ-PAYA JRNL TITL SOLVENT-EXPOSED RESIDUES LOCATED IN THE BETA-SHEET MODULATE JRNL TITL 2 THE STABILITY OF THE TETRAMERIZATION DOMAIN OF P53--A JRNL TITL 3 STRUCTURAL AND COMBINATORIAL APPROACH. JRNL REF PROTEINS V. 71 1670 2008 JRNL REFN ESSN 1097-0134 JRNL PMID 18076077 JRNL DOI 10.1002/PROT.21854 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J0Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290029618. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.0 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 5% D2O/95% WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 17 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG B 333 35.53 -98.29 REMARK 500 1 TYR C 327 150.99 61.82 REMARK 500 1 ALA C 355 80.13 -161.98 REMARK 500 1 ARG D 333 36.21 -98.10 REMARK 500 2 ALA A 355 111.52 60.67 REMARK 500 2 ARG B 333 39.19 -96.80 REMARK 500 2 LEU D 330 98.65 -160.43 REMARK 500 2 ALA D 355 77.93 -103.46 REMARK 500 3 ARG C 333 32.57 -98.58 REMARK 500 3 ARG D 333 34.35 -98.29 REMARK 500 4 TYR A 327 140.64 63.15 REMARK 500 4 ARG B 333 30.81 -98.73 REMARK 500 4 ARG C 333 34.22 -98.40 REMARK 500 4 ARG D 333 32.85 -98.40 REMARK 500 5 ALA A 355 -67.45 -107.75 REMARK 500 5 TYR B 327 97.15 60.29 REMARK 500 5 GLN B 331 88.53 -69.33 REMARK 500 5 ALA B 355 77.65 -107.50 REMARK 500 5 TYR D 327 110.60 60.55 REMARK 500 5 ARG D 333 35.64 -98.85 REMARK 500 6 ARG A 333 38.65 -97.42 REMARK 500 6 TYR B 327 118.75 62.55 REMARK 500 6 GLN B 331 84.44 -69.94 REMARK 500 6 ARG C 333 31.11 -98.21 REMARK 500 6 TYR D 327 112.69 61.15 REMARK 500 7 TYR B 327 96.53 60.33 REMARK 500 7 TYR D 327 152.79 61.69 REMARK 500 7 ARG D 333 34.21 -99.57 REMARK 500 8 TYR A 327 106.64 60.46 REMARK 500 8 ALA A 355 78.22 -100.21 REMARK 500 8 TYR B 327 96.30 60.32 REMARK 500 8 ARG B 333 32.84 -98.48 REMARK 500 8 TYR C 327 139.37 63.21 REMARK 500 8 ARG D 333 30.80 -98.67 REMARK 500 9 ARG B 333 32.87 -98.63 REMARK 500 9 ARG C 333 35.62 -98.16 REMARK 500 9 ARG D 333 38.13 -97.72 REMARK 500 10 ALA A 355 111.56 60.60 REMARK 500 10 TYR B 327 98.00 60.56 REMARK 500 10 ARG B 333 31.15 -98.80 REMARK 500 10 ARG D 333 33.42 -98.77 REMARK 500 11 ARG A 333 32.61 -98.76 REMARK 500 11 ARG B 333 30.65 -98.77 REMARK 500 11 ALA B 355 86.68 -66.77 REMARK 500 11 TYR C 327 101.84 60.06 REMARK 500 11 ARG C 333 34.67 -98.87 REMARK 500 11 ALA C 355 79.79 59.55 REMARK 500 12 ARG A 333 35.04 -98.42 REMARK 500 13 TYR B 327 111.11 60.55 REMARK 500 13 ARG B 333 35.60 -98.12 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A1U RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE DETERMINATION OF A P53 MUTANT DIMERIZATION REMARK 900 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1AIE RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1C26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P53 TETRAMERIZATION DOMAIN REMARK 900 RELATED ID: 1DT7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF REMARK 900 P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB) REMARK 900 RELATED ID: 1GZH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BRCT DOMAINS OF HUMAN 53BP1 BOUND TO THE REMARK 900 P53 TUMOR SUPRESSOR REMARK 900 RELATED ID: 1H26 RELATED DB: PDB REMARK 900 CDK2/CYCLINA IN COMPLEX WITH AN 11-RESIDUE RECRUITMENT PEPTIDE FROM REMARK 900 P53 REMARK 900 RELATED ID: 1HS5 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF DESIGNED P53 DIMER REMARK 900 RELATED ID: 1JSP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF CBP BROMODOMAIN IN COMPLEX WITH P53 PEPTIDE REMARK 900 RELATED ID: 1KZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 53BP1 BRCT REGION COMPLEXED TOTUMOR REMARK 900 SUPPRESSOR P53 REMARK 900 RELATED ID: 1MA3 RELATED DB: PDB REMARK 900 STRUCTURE OF A SIR2 ENZYME BOUND TO AN ACETYLATED P53PEPTIDE REMARK 900 RELATED ID: 1OLG RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1OLH RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, 35 STRUCTURES) REMARK 900 RELATED ID: 1PES RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) ( P53TET) (NMR, REMARK 900 MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1PET RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) ( P53TET) (NMR, 19 REMARK 900 STRUCTURES) REMARK 900 RELATED ID: 1SAE RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 1SAF RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1SAG RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 1SAH RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1SAI RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 1SAJ RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 1SAL RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1TSR RELATED DB: PDB REMARK 900 P53 CORE DOMAIN IN COMPLEX WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1TUP RELATED DB: PDB REMARK 900 TUMOR SUPPRESSOR P53 COMPLEXED WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1UOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN P53 CORE DOMAIN MUTANT M133L/V203A/ REMARK 900 N239Y/N268D AT 1 .9 A RESOLUTION. REMARK 900 RELATED ID: 1XQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF THEMETHYLTRANSFERASE SET9 REMARK 900 (ALSO KNOWN AS SET7 /9) WITH A P53PEPTIDE AND SAH REMARK 900 RELATED ID: 1YCQ RELATED DB: PDB REMARK 900 XENOPUS LAEVIS MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF HUMAN P53 REMARK 900 RELATED ID: 1YCR RELATED DB: PDB REMARK 900 MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 1YCS RELATED DB: PDB REMARK 900 P53-53BP2 COMPLEX REMARK 900 RELATED ID: 2AC0 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX I) REMARK 900 RELATED ID: 2ADY RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX IV) REMARK 900 RELATED ID: 2AHI RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX III) REMARK 900 RELATED ID: 2ATA RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX II) REMARK 900 RELATED ID: 2B3G RELATED DB: PDB REMARK 900 P53N (FRAGMENT 33-60) BOUND TO RPA70N REMARK 900 RELATED ID: 2BIM RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-N268D-R273H REMARK 900 RELATED ID: 2BIN RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R- V203A-N239Y-N268D REMARK 900 RELATED ID: 2BIO RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-R249S-N268D REMARK 900 RELATED ID: 2BIP RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R- V203A-N239Y-R249S-N268D REMARK 900 RELATED ID: 2BIQ RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT T123A-M133L- H168R-V203A-N239Y-R249S- REMARK 900 N268D REMARK 900 RELATED ID: 2F1X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRAF-LIKE DOMAIN OF HAUSP/USP7BOUND TO A REMARK 900 P53 PEPTIDE REMARK 900 RELATED ID: 2FEJ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN P53 DNA BINDING DOMAIN. REMARK 900 RELATED ID: 3SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2J10 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT T329K Q331K REMARK 900 RELATED ID: 2J11 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT Y327S T329G Q331G REMARK 900 RELATED ID: 2TOH RELATED DB: PDB REMARK 900 TYROSINE HYDROXYLASE CATALYTIC AND TETRAMERIZATION DOMAINS FROM RAT REMARK 900 RELATED ID: 7251 RELATED DB: BMRB DBREF 2J0Z A 326 356 UNP P04637 P53_HUMAN 326 356 DBREF 2J0Z B 326 356 UNP P04637 P53_HUMAN 326 356 DBREF 2J0Z C 326 356 UNP P04637 P53_HUMAN 326 356 DBREF 2J0Z D 326 356 UNP P04637 P53_HUMAN 326 356 SEQRES 1 A 31 GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU ARG PHE SEQRES 2 A 31 GLU MET PHE ARG GLU LEU ASN GLU ALA LEU GLU LEU LYS SEQRES 3 A 31 ASP ALA GLN ALA GLY SEQRES 1 B 31 GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU ARG PHE SEQRES 2 B 31 GLU MET PHE ARG GLU LEU ASN GLU ALA LEU GLU LEU LYS SEQRES 3 B 31 ASP ALA GLN ALA GLY SEQRES 1 C 31 GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU ARG PHE SEQRES 2 C 31 GLU MET PHE ARG GLU LEU ASN GLU ALA LEU GLU LEU LYS SEQRES 3 C 31 ASP ALA GLN ALA GLY SEQRES 1 D 31 GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU ARG PHE SEQRES 2 D 31 GLU MET PHE ARG GLU LEU ASN GLU ALA LEU GLU LEU LYS SEQRES 3 D 31 ASP ALA GLN ALA GLY HELIX 1 1 GLY A 334 ALA A 355 1 22 HELIX 2 2 GLY B 334 ALA B 355 1 22 HELIX 3 3 GLY C 334 GLN C 354 1 21 HELIX 4 4 GLY D 334 ALA D 355 1 22 SHEET 1 AA 2 PHE A 328 ILE A 332 0 SHEET 2 AA 2 PHE B 328 ILE B 332 -1 O PHE B 328 N ILE A 332 SHEET 1 CA 2 PHE C 328 ILE C 332 0 SHEET 2 CA 2 PHE D 328 ILE D 332 -1 O PHE D 328 N ILE C 332 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1