HEADER TRANSFERASE 15-AUG-06 2J1O TITLE GERANYLGERANYL DIPHOSPHATE SYNTHASE FROM SINAPIS ALBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 74-152,171-230,238-298,313-366; COMPND 5 SYNONYM: GGPP SYNTHETASE, GGPS, GERANYLGERANYL DIPHOSPHATE SYNTHASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSFERASE, ISOPRENE BIOSYNTHESIS, MULTIFUNCTIONAL ENZYME, KEYWDS 2 CAROTENOID BIOSYNTHESIS, ISOPRENYL TRANSTRANSFERASE, ISOPRENOID KEYWDS 3 DIPHOSPHATE SYNTHASE, TRANSIT PEPTIDE, CHLOROPLAST EXPDTA X-RAY DIFFRACTION AUTHOR D.P.KLOER,R.WELSCH,P.BEYER,G.E.SCHULZ REVDAT 3 13-JUL-11 2J1O 1 VERSN REVDAT 2 24-FEB-09 2J1O 1 VERSN REVDAT 1 02-JAN-07 2J1O 0 JRNL AUTH D.P.KLOER,R.WELSCH,P.BEYER,G.E.SCHULZ JRNL TITL STRUCTURE AND REACTION GEOMETRY OF GERANYLGERANYL JRNL TITL 2 DIPHOSPHATE SYNTHASE FROM SINAPIS ALBA. JRNL REF BIOCHEMISTRY V. 45 15197 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17176041 JRNL DOI 10.1021/BI061572K REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 1.69000 REMARK 3 B12 (A**2) : -0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1940 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1305 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2617 ; 1.563 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3198 ; 1.054 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 5.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;34.067 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;16.334 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2132 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 365 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 492 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1335 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 990 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1001 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.279 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1617 ; 1.239 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2005 ; 1.495 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 747 ; 2.639 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 612 ; 3.580 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5466 54.0184 2.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2282 REMARK 3 T33: 0.0086 T12: -0.0443 REMARK 3 T13: -0.0385 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 9.7058 L22: 1.7449 REMARK 3 L33: 3.2388 L12: -0.6231 REMARK 3 L13: 1.3063 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.6618 S13: 0.0362 REMARK 3 S21: -0.4544 S22: 0.1527 S23: -0.0303 REMARK 3 S31: -0.1413 S32: 0.2936 S33: -0.1221 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 52.6402 53.5735 8.8041 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.2219 REMARK 3 T33: 0.0722 T12: -0.0505 REMARK 3 T13: 0.0225 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.1213 L22: 3.0851 REMARK 3 L33: 1.6050 L12: -0.7497 REMARK 3 L13: 0.8578 L23: -0.8207 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.5214 S13: 0.0363 REMARK 3 S21: -0.2789 S22: 0.0801 S23: -0.0817 REMARK 3 S31: -0.0247 S32: 0.1383 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6509 66.0009 11.4258 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.1068 REMARK 3 T33: 0.2388 T12: 0.1536 REMARK 3 T13: 0.0512 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 48.0293 L22: 14.5249 REMARK 3 L33: 14.2047 L12: -3.8918 REMARK 3 L13: 6.8242 L23: 0.1196 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: -0.7895 S13: 1.8335 REMARK 3 S21: 0.0436 S22: 0.2247 S23: 0.4802 REMARK 3 S31: -1.3697 S32: -0.1893 S33: -0.1336 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2315 47.0176 16.1026 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1654 REMARK 3 T33: 0.1522 T12: -0.0136 REMARK 3 T13: 0.0059 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.1970 L22: 2.4743 REMARK 3 L33: 2.2269 L12: 0.0689 REMARK 3 L13: 0.4853 L23: -0.9910 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0942 S13: -0.2647 REMARK 3 S21: -0.2130 S22: 0.0742 S23: -0.0425 REMARK 3 S31: 0.0851 S32: -0.0249 S33: -0.0741 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5370 66.2965 27.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.0775 REMARK 3 T33: 0.1768 T12: -0.1262 REMARK 3 T13: 0.2304 T23: -0.1426 REMARK 3 L TENSOR REMARK 3 L11: 6.3923 L22: 9.5699 REMARK 3 L33: 5.6896 L12: 5.2665 REMARK 3 L13: 3.5781 L23: -1.4435 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: -0.2065 S13: 0.8613 REMARK 3 S21: 0.4872 S22: 0.0988 S23: 0.1372 REMARK 3 S31: -1.1047 S32: 0.3376 S33: -0.2178 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 58.7179 57.2364 20.8813 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.2159 REMARK 3 T33: 0.1450 T12: -0.0619 REMARK 3 T13: -0.0049 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.7563 L22: 6.6672 REMARK 3 L33: 1.4235 L12: -0.3704 REMARK 3 L13: -0.2379 L23: -0.8369 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.1156 S13: 0.0691 REMARK 3 S21: 0.2812 S22: -0.0636 S23: -0.2289 REMARK 3 S31: -0.3184 S32: 0.3803 S33: 0.0678 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7576 67.0976 15.9437 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1912 REMARK 3 T33: 0.1453 T12: -0.1243 REMARK 3 T13: -0.0147 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.8818 L22: 9.6769 REMARK 3 L33: 2.0881 L12: 0.0907 REMARK 3 L13: 0.0313 L23: -0.5612 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.1001 S13: 0.2942 REMARK 3 S21: -0.4427 S22: -0.1517 S23: -0.1722 REMARK 3 S31: -0.4898 S32: 0.3707 S33: 0.1309 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 67.7207 67.8159 16.5238 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.2196 REMARK 3 T33: 0.2647 T12: -0.1615 REMARK 3 T13: -0.0155 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.6247 L22: 19.8097 REMARK 3 L33: 2.5054 L12: -6.6800 REMARK 3 L13: -1.2533 L23: 2.7460 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0993 S13: 0.4314 REMARK 3 S21: -0.2672 S22: -0.0199 S23: -0.7604 REMARK 3 S31: -0.6588 S32: 0.4844 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 65.2421 63.7386 6.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.2479 REMARK 3 T33: 0.0852 T12: -0.0138 REMARK 3 T13: 0.1302 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 14.9850 L22: 48.1867 REMARK 3 L33: 3.2001 L12: -15.7995 REMARK 3 L13: 0.9733 L23: 8.9187 REMARK 3 S TENSOR REMARK 3 S11: 0.5688 S12: 0.3309 S13: 1.4981 REMARK 3 S21: -3.1874 S22: -0.7606 S23: -1.2757 REMARK 3 S31: -1.9289 S32: -0.1495 S33: 0.1918 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2J1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 10.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.61667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.23333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.23333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 107.71500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 62.18928 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.61624 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 THR A 11 REMARK 465 ASP A 12 REMARK 465 ASN A 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 127 CB SER A 127 OG 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 16 -54.88 -29.90 REMARK 500 VAL A 180 19.76 47.73 REMARK 500 THR A 193 -52.98 -121.43 REMARK 500 ARG A 305 178.48 177.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J1P RELATED DB: PDB REMARK 900 GERANYLGERANYL DIPHOSPHATE SYNTHASE FROM SINAPIS REMARK 900 ALBA IN COMPLEX WITH GGPP DBREF 2J1O A 1 14 PDB 2J1O 2J1O 1 14 DBREF 2J1O A 15 93 UNP Q43133 GGPPS_SINAL 74 152 DBREF 2J1O A 112 171 UNP Q43133 GGPPS_SINAL 171 230 DBREF 2J1O A 179 239 UNP Q43133 GGPPS_SINAL 238 298 DBREF 2J1O A 254 307 UNP Q43133 GGPPS_SINAL 313 366 SEQADV 2J1O ALA A 78 UNP Q43133 ARG 137 CONFLICT SEQRES 1 A 268 MET MET ARG GLY SER HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 268 ILE SER TYR ILE ILE ARG LYS ALA ASP SER VAL ASN LYS SEQRES 3 A 268 ALA LEU ASP SER ALA VAL PRO LEU ARG GLU PRO LEU LYS SEQRES 4 A 268 ILE HIS GLU ALA MET ARG TYR SER LEU LEU ALA GLY GLY SEQRES 5 A 268 LYS ARG VAL ARG PRO VAL LEU CYS ILE ALA ALA CYS GLU SEQRES 6 A 268 LEU VAL GLY GLY GLU GLU SER LEU ALA MET PRO ALA ALA SEQRES 7 A 268 CYS ALA VAL GLU MET ILE HIS THR MET SER LEU ILE HIS SEQRES 8 A 268 ASP ASP VAL TYR GLY GLU ASP VAL ALA VAL LEU ALA GLY SEQRES 9 A 268 ASP ALA LEU LEU SER PHE ALA PHE GLU HIS LEU ALA SER SEQRES 10 A 268 ALA THR SER SER GLU VAL SER PRO ALA ARG VAL VAL ARG SEQRES 11 A 268 ALA VAL GLY GLU LEU ALA LYS ALA ILE GLY THR GLU GLY SEQRES 12 A 268 LEU VAL ALA GLY GLN VAL VAL ASP ILE SER ASN VAL GLY SEQRES 13 A 268 LEU GLU HIS LEU LYS PHE ILE HIS LEU HIS LYS THR ALA SEQRES 14 A 268 ALA LEU LEU GLU ALA SER ALA VAL LEU GLY GLY ILE ILE SEQRES 15 A 268 GLY GLY GLY SER ASP GLU GLU ILE GLU ARG LEU ARG LYS SEQRES 16 A 268 PHE ALA ARG CYS ILE GLY LEU LEU PHE GLN VAL VAL ASP SEQRES 17 A 268 ASP ILE LEU ASP VAL THR ILE ALA ASP LYS LEU THR TYR SEQRES 18 A 268 PRO LYS LEU MET GLY LEU GLU LYS SER ARG GLU PHE ALA SEQRES 19 A 268 GLU LYS LEU ASN THR GLU ALA ARG ASP GLN LEU LEU GLY SEQRES 20 A 268 PHE ASP SER ASP LYS VAL ALA PRO LEU LEU ALA LEU ALA SEQRES 21 A 268 ASN TYR ILE ALA ASN ARG GLN ASN HET GOL A1305 6 HETNAM GOL GLYCEROL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *87(H2 O) HELIX 1 1 PRO A 13 VAL A 32 1 20 HELIX 2 2 PRO A 37 ALA A 50 1 14 HELIX 3 3 ARG A 54 VAL A 67 1 14 HELIX 4 4 GLU A 70 ASP A 93 1 24 HELIX 5 5 GLY A 114 THR A 137 1 24 HELIX 6 6 SER A 142 GLY A 158 1 17 HELIX 7 7 GLY A 161 SER A 171 1 11 HELIX 8 8 VAL A 180 THR A 193 1 14 HELIX 9 9 THR A 193 GLY A 208 1 16 HELIX 10 10 SER A 211 THR A 239 1 29 HELIX 11 11 THR A 259 MET A 264 1 6 HELIX 12 12 GLY A 265 LEU A 284 1 20 HELIX 13 13 ASP A 288 ASN A 304 1 17 CISPEP 1 GLU A 36 PRO A 37 0 -6.42 SITE 1 AC1 8 GLU A 160 LEU A 190 ALA A 195 GLU A 198 SITE 2 AC1 8 ARG A 223 HOH A2085 HOH A2086 HOH A2087 CRYST1 71.810 71.810 127.850 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013926 0.008040 0.000000 0.00000 SCALE2 0.000000 0.016080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007822 0.00000