HEADER RIBOSOME 18-AUG-06 2J37 TITLE MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L23; COMPND 3 CHAIN: 4; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: RIBOSOMAL PROTEIN L35; COMPND 6 CHAIN: 5; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: RIBOSOMAL PROTEIN L31; COMPND 9 CHAIN: 6; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: SRP RNA; COMPND 12 CHAIN: A; COMPND 13 MOL_ID: 5; COMPND 14 MOLECULE: SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN (SRP19); COMPND 15 CHAIN: B; COMPND 16 MOL_ID: 6; COMPND 17 MOLECULE: SIGNAL SEQUENCE; COMPND 18 CHAIN: S; COMPND 19 MOL_ID: 7; COMPND 20 MOLECULE: SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (SRP54); COMPND 21 CHAIN: W; COMPND 22 MOL_ID: 8; COMPND 23 MOLECULE: RIBOSOMAL RNA; COMPND 24 CHAIN: Z SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM SP.; SOURCE 3 ORGANISM_TAXID: 4569; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: TRITICUM SP.; SOURCE 6 ORGANISM_COMMON: WHEAT; SOURCE 7 ORGANISM_TAXID: 4569; SOURCE 8 MOL_ID: 3; SOURCE 9 ORGANISM_SCIENTIFIC: TRITICUM SP; SOURCE 10 ORGANISM_COMMON: WHEAT; SOURCE 11 ORGANISM_TAXID: 4569; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: CANIS SP.; SOURCE 14 ORGANISM_TAXID: 9616; SOURCE 15 MOL_ID: 5; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 6; SOURCE 20 ORGANISM_SCIENTIFIC: CANIS SP.; SOURCE 21 ORGANISM_TAXID: 9616; SOURCE 22 MOL_ID: 7; SOURCE 23 ORGANISM_SCIENTIFIC: CANIS SP.; SOURCE 24 ORGANISM_TAXID: 9616; SOURCE 25 MOL_ID: 8; SOURCE 26 ORGANISM_SCIENTIFIC: HALOARCULA MARISMORTUI; SOURCE 27 ORGANISM_TAXID: 2238 KEYWDS RIBOSOME, SRP, TRANSLATION/RNA EXPDTA ELECTRON MICROSCOPY AUTHOR M.HALIC,M.BLAU,T.BECKER,T.MIELKE,M.R.POOL,K.WILD,I.SINNING,R.BECKMANN REVDAT 7 08-MAY-24 2J37 1 REMARK REVDAT 6 10-APR-19 2J37 1 SOURCE REMARK DBREF REVDAT 5 07-MAR-18 2J37 1 COMPND JRNL REMARK REVDAT 4 24-FEB-09 2J37 1 VERSN REVDAT 3 03-JAN-07 2J37 1 HEADER COMPND REVDAT 2 22-NOV-06 2J37 1 TITLE AUTHOR JRNL REVDAT 1 08-NOV-06 2J37 0 JRNL AUTH M.HALIC,M.BLAU,T.BECKER,T.MIELKE,M.R.POOL,K.WILD,I.SINNING, JRNL AUTH 2 R.BECKMANN JRNL TITL FOLLOWING THE SIGNAL SEQUENCE FROM RIBOSOMAL TUNNEL EXIT TO JRNL TITL 2 SIGNAL RECOGNITION PARTICLE. JRNL REF NATURE V. 444 507 2006 JRNL REFN ESSN 1476-4687 JRNL PMID 17086193 JRNL DOI 10.1038/NATURE05326 REMARK 2 REMARK 2 RESOLUTION. 8.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 8.700 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 2J37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290029748. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SRP BOUND TO 80S RNCS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 123400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 4, 5, 6, A, B, S, W, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 4 1 REMARK 465 ALA 4 2 REMARK 465 PRO 4 3 REMARK 465 LYS 4 4 REMARK 465 VAL 4 5 REMARK 465 ALA 4 6 REMARK 465 VAL 4 7 REMARK 465 ALA 4 8 REMARK 465 LYS 4 9 REMARK 465 LYS 4 10 REMARK 465 GLY 4 11 REMARK 465 ASP 4 12 REMARK 465 ALA 4 13 REMARK 465 LYS 4 14 REMARK 465 ALA 4 15 REMARK 465 GLN 4 16 REMARK 465 ALA 4 17 REMARK 465 ALA 4 18 REMARK 465 LYS 4 19 REMARK 465 VAL 4 20 REMARK 465 ALA 4 21 REMARK 465 LYS 4 22 REMARK 465 ALA 4 23 REMARK 465 VAL 4 24 REMARK 465 LYS 4 25 REMARK 465 SER 4 26 REMARK 465 GLY 4 27 REMARK 465 SER 4 28 REMARK 465 ILE 4 29 REMARK 465 LYS 4 30 REMARK 465 LYS 4 31 REMARK 465 THR 4 32 REMARK 465 ALA 4 33 REMARK 465 LYS 4 34 REMARK 465 LYS 4 35 REMARK 465 ILE 4 36 REMARK 465 ARG 4 37 REMARK 465 THR 4 38 REMARK 465 SER 4 39 REMARK 465 VAL 4 40 REMARK 465 THR 4 41 REMARK 465 PHE 4 42 REMARK 465 HIS 4 43 REMARK 465 ARG 4 44 REMARK 465 PRO 4 45 REMARK 465 LYS 4 46 REMARK 465 THR 4 47 REMARK 465 LEU 4 48 REMARK 465 SER 4 49 REMARK 465 LYS 4 50 REMARK 465 ALA 4 51 REMARK 465 ARG 4 52 REMARK 465 ASP 4 53 REMARK 465 PRO 4 54 REMARK 465 LYS 4 55 REMARK 465 TYR 4 56 REMARK 465 PRO 4 57 REMARK 465 ARG 4 58 REMARK 465 ILE 4 59 REMARK 465 SER 4 60 REMARK 465 THR 4 61 REMARK 465 PRO 4 62 REMARK 465 GLY 4 63 REMARK 465 ARG 4 64 REMARK 465 ASN 4 65 REMARK 465 LYS 4 66 REMARK 465 LEU 4 67 REMARK 465 ASP 4 68 REMARK 465 GLY 4 150 REMARK 465 ILE 4 151 REMARK 465 ILE 4 152 REMARK 465 MET 5 1 REMARK 465 SER 5 2 REMARK 465 SER 5 3 REMARK 465 ALA 5 68 REMARK 465 GLN 5 69 REMARK 465 LEU 5 70 REMARK 465 ARG 5 71 REMARK 465 LEU 5 72 REMARK 465 PHE 5 73 REMARK 465 TYR 5 74 REMARK 465 LYS 5 75 REMARK 465 ASN 5 76 REMARK 465 LYS 5 77 REMARK 465 LYS 5 78 REMARK 465 TYR 5 79 REMARK 465 ALA 5 80 REMARK 465 PRO 5 81 REMARK 465 LEU 5 82 REMARK 465 ASP 5 83 REMARK 465 LEU 5 84 REMARK 465 ARG 5 85 REMARK 465 ALA 5 86 REMARK 465 LYS 5 87 REMARK 465 GLN 5 88 REMARK 465 THR 5 89 REMARK 465 ARG 5 90 REMARK 465 ALA 5 91 REMARK 465 ILE 5 92 REMARK 465 ARG 5 93 REMARK 465 ARG 5 94 REMARK 465 ARG 5 95 REMARK 465 LEU 5 96 REMARK 465 SER 5 97 REMARK 465 PRO 5 98 REMARK 465 ASP 5 99 REMARK 465 GLU 5 100 REMARK 465 LYS 5 101 REMARK 465 SER 5 102 REMARK 465 ARG 5 103 REMARK 465 VAL 5 104 REMARK 465 LEU 5 105 REMARK 465 GLU 5 106 REMARK 465 LYS 5 107 REMARK 465 THR 5 108 REMARK 465 LYS 5 109 REMARK 465 LYS 5 110 REMARK 465 ARG 5 111 REMARK 465 THR 5 112 REMARK 465 VAL 5 113 REMARK 465 HIS 5 114 REMARK 465 PHE 5 115 REMARK 465 PRO 5 116 REMARK 465 GLN 5 117 REMARK 465 ARG 5 118 REMARK 465 LYS 5 119 REMARK 465 PHE 5 120 REMARK 465 ALA 5 121 REMARK 465 ILE 5 122 REMARK 465 LYS 5 123 REMARK 465 ALA 5 124 REMARK 465 MET 6 1 REMARK 465 SER 6 2 REMARK 465 GLU 6 3 REMARK 465 LYS 6 4 REMARK 465 LYS 6 5 REMARK 465 ARG 6 6 REMARK 465 ALA 6 7 REMARK 465 PRO 6 8 REMARK 465 GLY 6 9 REMARK 465 PRO 6 10 REMARK 465 ARG 6 11 REMARK 465 LYS 6 12 REMARK 465 ASP 6 13 REMARK 465 GLU 6 14 REMARK 465 VAL 6 15 REMARK 465 VAL 6 16 REMARK 465 TYR 6 98 REMARK 465 SER 6 99 REMARK 465 LEU 6 100 REMARK 465 VAL 6 101 REMARK 465 THR 6 102 REMARK 465 VAL 6 103 REMARK 465 ALA 6 104 REMARK 465 GLU 6 105 REMARK 465 VAL 6 106 REMARK 465 PRO 6 107 REMARK 465 GLN 6 108 REMARK 465 GLU 6 109 REMARK 465 GLY 6 110 REMARK 465 LEU 6 111 REMARK 465 LYS 6 112 REMARK 465 GLY 6 113 REMARK 465 LEU 6 114 REMARK 465 GLY 6 115 REMARK 465 THR 6 116 REMARK 465 LYS 6 117 REMARK 465 VAL 6 118 REMARK 465 VAL 6 119 REMARK 465 GLU 6 120 REMARK 465 ASP 6 121 REMARK 465 GLU 6 122 REMARK 465 ASP 6 123 REMARK 465 MET B 13 REMARK 465 MET W 1 REMARK 465 VAL W 2 REMARK 465 LEU W 3 REMARK 465 ALA W 4 REMARK 465 ASP W 5 REMARK 465 LEU W 6 REMARK 465 GLY W 7 REMARK 465 LYS W 100 REMARK 465 GLN W 101 REMARK 465 GLN W 489 REMARK 465 GLY W 490 REMARK 465 ALA W 491 REMARK 465 ALA W 492 REMARK 465 GLY W 493 REMARK 465 ASN W 494 REMARK 465 MET W 495 REMARK 465 LYS W 496 REMARK 465 GLY W 497 REMARK 465 MET W 498 REMARK 465 MET W 499 REMARK 465 GLY W 500 REMARK 465 PHE W 501 REMARK 465 ASN W 502 REMARK 465 ASN W 503 REMARK 465 MET W 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE W 437 CB CG1 CG2 CD1 REMARK 470 LYS W 438 CB CG CD CE NZ REMARK 470 LEU W 440 CB CG CD1 CD2 REMARK 470 PHE W 441 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS W 442 CB CG CD CE NZ REMARK 470 ASP W 445 CB CG OD1 OD2 REMARK 470 MET W 446 CB CG SD CE REMARK 470 SER W 447 CB OG REMARK 470 LYS W 448 CB CG CD CE NZ REMARK 470 ASN W 449 CB CG OD1 ND2 REMARK 470 VAL W 450 CB CG1 CG2 REMARK 470 SER W 451 CB OG REMARK 470 GLN W 452 CB CG CD OE1 NE2 REMARK 470 SER W 453 CB OG REMARK 470 GLN W 454 CB CG CD OE1 NE2 REMARK 470 MET W 455 CB CG SD CE REMARK 470 ALA W 456 CB REMARK 470 LYS W 457 CB CG CD CE NZ REMARK 470 LEU W 458 CB CG CD1 CD2 REMARK 470 ASN W 459 CB CG OD1 ND2 REMARK 470 GLN W 460 CB CG CD OE1 NE2 REMARK 470 GLN W 461 CB CG CD OE1 NE2 REMARK 470 MET W 462 CB CG SD CE REMARK 470 ALA W 463 CB REMARK 470 LYS W 464 CB CG CD CE NZ REMARK 470 MET W 465 CB CG SD CE REMARK 470 MET W 466 CB CG SD CE REMARK 470 ASP W 467 CB CG OD1 OD2 REMARK 470 PRO W 468 CB CG CD REMARK 470 ARG W 469 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL W 470 CB CG1 CG2 REMARK 470 LEU W 471 CB CG CD1 CD2 REMARK 470 HIS W 472 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS W 473 CB CG ND1 CD2 CE1 NE2 REMARK 470 MET W 474 CB CG SD CE REMARK 470 MET W 477 CB CG SD CE REMARK 470 ALA W 478 CB REMARK 470 LEU W 480 CB CG CD1 CD2 REMARK 470 GLN W 481 CB CG CD OE1 NE2 REMARK 470 SER W 482 CB OG REMARK 470 MET W 483 CB CG SD CE REMARK 470 MET W 484 CB CG SD CE REMARK 470 ARG W 485 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN W 486 CB CG CD OE1 NE2 REMARK 470 PHE W 487 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN W 488 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ILE 4 95 CG2 VAL 4 96 0.12 REMARK 500 C ILE W 352 CD PRO W 353 0.30 REMARK 500 NE ARG 6 58 C4' G Z 49 0.33 REMARK 500 OD1 ASN 4 89 OP1 C Z 172 0.52 REMARK 500 CE2 PHE W 285 CG PRO W 289 0.54 REMARK 500 OD1 ASN 4 121 P A Z 112 0.61 REMARK 500 CE LYS 4 148 CA SER W 67 0.61 REMARK 500 CE2 TYR 4 75 CB VAL 5 38 0.61 REMARK 500 CD2 TYR 4 75 CG2 VAL 5 38 0.63 REMARK 500 CD LYS 6 65 O2' C Z 64 0.65 REMARK 500 CD GLU 5 29 CG1 ILE W 22 0.66 REMARK 500 O GLY W 343 O PRO W 344 0.67 REMARK 500 CZ ARG 6 58 O4' G Z 49 0.68 REMARK 500 CA LYS 4 148 C GLY W 68 0.71 REMARK 500 O2' C Z 159 N3 A Z 212 0.71 REMARK 500 CE1 HIS W 324 OD1 ASN W 338 0.72 REMARK 500 ND2 ASN 4 89 O3' C Z 171 0.74 REMARK 500 CB SER W 292 CD GLU W 301 0.74 REMARK 500 CD2 PHE S 56 C ILE W 352 0.74 REMARK 500 C4' G Z 161 O2' G Z 267 0.74 REMARK 500 N VAL W 87 CD2 LEU W 260 0.77 REMARK 500 C SER W 16 CB LEU W 17 0.79 REMARK 500 NH2 ARG 6 58 C1' G Z 49 0.79 REMARK 500 O LYS W 323 OE1 GLN W 337 0.81 REMARK 500 CZ PHE W 80 CB ILE W 291 0.81 REMARK 500 CD2 PHE S 56 CA ILE W 352 0.85 REMARK 500 CB THR W 328 OE2 GLU W 334 0.87 REMARK 500 ND2 ASN 4 89 P C Z 172 0.87 REMARK 500 NH2 ARG 6 58 O4' G Z 49 0.87 REMARK 500 CG ASN 4 89 OP1 C Z 172 0.88 REMARK 500 CA LEU W 322 CE1 PHE W 327 0.88 REMARK 500 CD2 PHE W 285 CG PRO W 289 0.89 REMARK 500 N LYS 4 148 O GLY W 68 0.89 REMARK 500 CD2 PHE S 56 CD PRO W 353 0.90 REMARK 500 CG LEU S 50 O ALA W 478 0.91 REMARK 500 CA THR W 328 CD GLU W 334 0.92 REMARK 500 NZ LYS 4 148 OG SER W 67 0.92 REMARK 500 O ILE W 352 CD PRO W 353 0.92 REMARK 500 CG LYS 4 148 O SER W 67 0.94 REMARK 500 O ASP W 313 CG ASP W 314 0.94 REMARK 500 O ASP W 313 OD1 ASP W 314 0.96 REMARK 500 CG PHE S 56 CA ILE W 352 0.97 REMARK 500 O ILE W 352 CG PRO W 353 0.97 REMARK 500 ND2 ASN 4 121 O3' U Z 111 0.98 REMARK 500 CB ILE W 46 OE1 GLN W 227 0.98 REMARK 500 O HIS W 324 OG1 THR W 328 0.99 REMARK 500 CA ARG 5 34 CD LYS 5 37 0.99 REMARK 500 OE2 GLU 5 29 CG1 ILE W 22 0.99 REMARK 500 OG SER W 292 OE2 GLU W 301 1.00 REMARK 500 O THR W 357 N PHE W 359 1.00 REMARK 500 REMARK 500 THIS ENTRY HAS 527 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG 4 125 CZ ARG 4 125 NH2 0.117 REMARK 500 LYS 4 131 CD LYS 4 131 CE 0.201 REMARK 500 LYS 4 135 CD LYS 4 135 CE 0.171 REMARK 500 TYR 4 140 CZ TYR 4 140 CE2 -0.103 REMARK 500 ARG 5 34 CZ ARG 5 34 NH2 0.078 REMARK 500 ILE 5 35 C GLN 5 36 N 0.224 REMARK 500 ALA 5 39 C SER 5 40 N -0.324 REMARK 500 GLY 5 42 C SER 5 43 N 0.144 REMARK 500 LEU W 40 N LEU W 40 CA 0.141 REMARK 500 LEU W 40 CA LEU W 40 CB 0.258 REMARK 500 LEU W 40 CB LEU W 40 CG 0.276 REMARK 500 LEU W 40 CA LEU W 40 C -0.330 REMARK 500 LEU W 40 C LEU W 40 O 0.124 REMARK 500 GLU W 41 N GLU W 41 CA 0.259 REMARK 500 GLU W 41 CA GLU W 41 CB 0.195 REMARK 500 GLU W 41 CB GLU W 41 CG 0.139 REMARK 500 ALA W 42 CA ALA W 42 C -0.203 REMARK 500 LYS W 92 CB LYS W 92 CG 1.789 REMARK 500 GLY W 99 CA GLY W 99 C -0.148 REMARK 500 PHE W 106 CD1 PHE W 106 CE1 -0.127 REMARK 500 PHE W 106 CE1 PHE W 106 CZ -0.126 REMARK 500 SER W 112 CB SER W 112 OG -0.153 REMARK 500 CYS W 118 CA CYS W 118 CB -0.112 REMARK 500 LYS W 131 C THR W 132 N 0.160 REMARK 500 GLY W 161 C SER W 162 N 0.248 REMARK 500 ILE W 188 CB ILE W 188 CG2 -0.242 REMARK 500 GLN W 197 C GLN W 197 O -0.136 REMARK 500 PHE W 202 CB PHE W 202 CG -0.156 REMARK 500 PHE W 202 CE1 PHE W 202 CZ -0.373 REMARK 500 PHE W 202 CZ PHE W 202 CE2 0.314 REMARK 500 PHE W 202 CE2 PHE W 202 CD2 -0.187 REMARK 500 LYS W 237 CE LYS W 237 NZ -0.192 REMARK 500 LYS W 239 CA LYS W 239 CB -0.611 REMARK 500 LYS W 239 CB LYS W 239 CG 0.507 REMARK 500 LYS W 239 CG LYS W 239 CD 0.305 REMARK 500 VAL W 240 C ASP W 241 N -0.228 REMARK 500 ALA W 243 C SER W 244 N -0.265 REMARK 500 SER W 244 N SER W 244 CA -0.122 REMARK 500 PHE W 272 CA PHE W 272 CB -0.183 REMARK 500 PHE W 272 CG PHE W 272 CD2 0.096 REMARK 500 PHE W 272 CG PHE W 272 CD1 0.096 REMARK 500 PHE W 282 CD1 PHE W 282 CE1 -0.126 REMARK 500 PHE W 282 CE2 PHE W 282 CD2 -0.200 REMARK 500 PRO W 284 CB PRO W 284 CG 0.300 REMARK 500 PRO W 284 CD PRO W 284 N 1.954 REMARK 500 PHE W 285 CB PHE W 285 CG 0.756 REMARK 500 LYS W 286 CB LYS W 286 CG 1.496 REMARK 500 THR W 287 CB THR W 287 OG1 0.125 REMARK 500 THR W 287 CB THR W 287 CG2 -0.446 REMARK 500 PRO W 289 CG PRO W 289 CD -0.405 REMARK 500 REMARK 500 THIS ENTRY HAS 81 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR 4 70 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASN 4 90 CB - CG - OD1 ANGL. DEV. = -22.7 DEGREES REMARK 500 ASN 4 90 CB - CG - ND2 ANGL. DEV. = 18.9 DEGREES REMARK 500 ASP 4 101 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP 4 101 N - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 ASP 4 101 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 LYS 4 102 C - N - CA ANGL. DEV. = 23.7 DEGREES REMARK 500 ILE 4 115 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ILE 4 115 CA - CB - CG1 ANGL. DEV. = 17.7 DEGREES REMARK 500 ILE 4 115 CA - CB - CG2 ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS 4 119 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG 4 125 NH1 - CZ - NH2 ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG 4 125 NE - CZ - NH1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG 4 125 NE - CZ - NH2 ANGL. DEV. = -36.4 DEGREES REMARK 500 LYS 4 131 CG - CD - CE ANGL. DEV. = 24.0 DEGREES REMARK 500 LYS 4 131 CD - CE - NZ ANGL. DEV. = 22.2 DEGREES REMARK 500 LYS 4 135 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LYS 4 135 CB - CG - CD ANGL. DEV. = 18.8 DEGREES REMARK 500 LYS 4 135 CD - CE - NZ ANGL. DEV. = 16.9 DEGREES REMARK 500 TYR 4 140 CG - CD1 - CE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP 4 141 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP 4 141 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ALA 4 142 C - N - CA ANGL. DEV. = 27.9 DEGREES REMARK 500 ALA 4 142 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 VAL 4 145 CA - CB - CG2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP 5 17 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP 5 17 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG 5 34 NH1 - CZ - NH2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG 5 34 NE - CZ - NH1 ANGL. DEV. = -10.1 DEGREES REMARK 500 ILE 5 35 CA - C - N ANGL. DEV. = 26.2 DEGREES REMARK 500 ILE 5 35 O - C - N ANGL. DEV. = -47.9 DEGREES REMARK 500 ALA 5 39 CA - C - N ANGL. DEV. = 19.8 DEGREES REMARK 500 ALA 5 39 O - C - N ANGL. DEV. = -23.0 DEGREES REMARK 500 SER 5 40 C - N - CA ANGL. DEV. = 40.5 DEGREES REMARK 500 GLY 5 42 CA - C - N ANGL. DEV. = -25.2 DEGREES REMARK 500 GLY 5 42 O - C - N ANGL. DEV. = 28.1 DEGREES REMARK 500 SER 5 43 N - CA - CB ANGL. DEV. = -19.8 DEGREES REMARK 500 SER 5 43 N - CA - C ANGL. DEV. = 29.4 DEGREES REMARK 500 SER 5 43 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 SER 5 43 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 LYS 5 44 C - N - CA ANGL. DEV. = 24.6 DEGREES REMARK 500 LYS 5 44 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG 5 57 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG 6 18 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG 6 18 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASN 6 23 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG 6 27 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU 6 28 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 MET 6 52 CA - CB - CG ANGL. DEV. = 11.9 DEGREES REMARK 500 MET 6 52 CG - SD - CE ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 202 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN 4 90 -1.81 77.56 REMARK 500 ASP 4 97 -35.24 144.93 REMARK 500 ASP 4 101 145.48 -20.44 REMARK 500 ASP 4 114 61.93 62.34 REMARK 500 ARG 4 125 -148.52 83.73 REMARK 500 ASP 4 127 -32.71 179.00 REMARK 500 LYS 4 129 -150.33 -117.36 REMARK 500 ASP 4 141 119.09 -6.76 REMARK 500 ILE 5 35 -114.82 -70.26 REMARK 500 GLN 5 36 -29.02 6.52 REMARK 500 SER 5 40 150.71 11.52 REMARK 500 SER 5 43 -144.48 -95.39 REMARK 500 LYS 5 44 44.19 -147.76 REMARK 500 LEU 5 45 -40.46 -19.13 REMARK 500 GLN 5 66 20.12 98.68 REMARK 500 ASN 6 23 -120.98 -96.78 REMARK 500 LEU 6 24 -34.86 49.20 REMARK 500 LYS 6 35 28.33 -141.50 REMARK 500 MET 6 52 44.26 147.89 REMARK 500 GLU 6 90 15.08 135.21 REMARK 500 PHE B 15 175.04 -56.29 REMARK 500 ALA B 40 177.19 -57.72 REMARK 500 GLU B 42 -97.62 -43.51 REMARK 500 ALA B 55 44.40 -95.61 REMARK 500 VAL B 56 -8.84 -150.15 REMARK 500 LYS B 64 -45.19 -28.47 REMARK 500 ARG B 70 37.05 -92.77 REMARK 500 ASP B 75 -177.22 -50.44 REMARK 500 LEU B 86 -74.76 -93.03 REMARK 500 GLU B 89 -35.68 -35.62 REMARK 500 VAL B 96 -37.70 -35.81 REMARK 500 PRO B 99 -82.18 -69.04 REMARK 500 PRO B 113 11.77 -64.28 REMARK 500 PHE S 52 -70.60 -68.86 REMARK 500 ILE W 10 -37.80 -173.85 REMARK 500 THR W 11 -3.66 -57.52 REMARK 500 LEU W 14 -73.51 -43.25 REMARK 500 ASN W 19 -122.52 -167.26 REMARK 500 ASN W 24 -69.81 -161.50 REMARK 500 LEU W 28 -82.86 -61.46 REMARK 500 ALA W 30 -75.77 -50.95 REMARK 500 LEU W 32 -81.23 -48.67 REMARK 500 ALA W 38 -14.26 -46.96 REMARK 500 LEU W 39 -85.26 -76.12 REMARK 500 ASP W 43 -7.81 92.56 REMARK 500 ILE W 46 -147.35 176.08 REMARK 500 LYS W 47 -42.73 174.30 REMARK 500 LEU W 48 -91.49 -45.28 REMARK 500 VAL W 49 -59.97 0.77 REMARK 500 GLU W 54 -78.41 -75.15 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN 4 89 ASN 4 90 149.55 REMARK 500 ASP 4 101 LYS 4 102 -78.15 REMARK 500 ILE 4 124 ARG 4 125 116.73 REMARK 500 ASP 4 141 ALA 4 142 -129.71 REMARK 500 ALA 5 39 SER 5 40 -130.91 REMARK 500 SER 5 43 LYS 5 44 -103.09 REMARK 500 LYS 6 50 ALA 6 51 -143.72 REMARK 500 ALA 6 51 MET 6 52 -98.84 REMARK 500 LYS 6 86 ARG 6 87 -110.17 REMARK 500 ARG 6 87 ASN 6 88 -145.67 REMARK 500 ILE W 46 LYS W 47 -92.90 REMARK 500 VAL W 87 ASP W 88 140.87 REMARK 500 ASP W 167 PRO W 168 140.37 REMARK 500 LEU W 303 ILE W 304 141.72 REMARK 500 MET W 340 LYS W 341 -127.05 REMARK 500 MET W 351 ILE W 352 -139.50 REMARK 500 GLY W 354 PHE W 355 144.00 REMARK 500 MET W 360 SER W 361 149.43 REMARK 500 GLY W 363 ASN W 364 115.38 REMARK 500 ILE W 437 LYS W 438 142.35 REMARK 500 LYS W 448 ASN W 449 140.66 REMARK 500 SER W 451 GLN W 452 148.72 REMARK 500 LEU W 480 GLN W 481 120.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG 4 125 0.20 SIDE CHAIN REMARK 500 TYR 4 140 0.23 SIDE CHAIN REMARK 500 ARG 6 18 0.10 SIDE CHAIN REMARK 500 ARG 6 27 0.10 SIDE CHAIN REMARK 500 PHE 6 47 0.10 SIDE CHAIN REMARK 500 ARG 6 58 0.08 SIDE CHAIN REMARK 500 ARG 6 77 0.12 SIDE CHAIN REMARK 500 ARG 6 80 0.08 SIDE CHAIN REMARK 500 ARG 6 87 0.10 SIDE CHAIN REMARK 500 G A 197 0.07 SIDE CHAIN REMARK 500 A A 201 0.06 SIDE CHAIN REMARK 500 A A 208 0.06 SIDE CHAIN REMARK 500 ARG W 15 0.17 SIDE CHAIN REMARK 500 PHE W 202 0.14 SIDE CHAIN REMARK 500 PHE W 272 0.09 SIDE CHAIN REMARK 500 PHE W 282 0.11 SIDE CHAIN REMARK 500 PHE W 285 0.13 SIDE CHAIN REMARK 500 PHE W 290 0.11 SIDE CHAIN REMARK 500 ASP W 331 0.10 SIDE CHAIN REMARK 500 G Z 3 0.06 SIDE CHAIN REMARK 500 A Z 6 0.05 SIDE CHAIN REMARK 500 G Z 81 0.06 SIDE CHAIN REMARK 500 G Z 94 0.06 SIDE CHAIN REMARK 500 G Z 196 0.08 SIDE CHAIN REMARK 500 G Z 254 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP 4 101 -12.82 REMARK 500 ILE 5 35 42.41 REMARK 500 ALA 5 39 -13.51 REMARK 500 GLY W 161 15.55 REMARK 500 VAL W 240 -25.57 REMARK 500 ALA W 243 23.50 REMARK 500 LEU W 303 -33.70 REMARK 500 LYS W 321 43.44 REMARK 500 HIS W 324 30.04 REMARK 500 MET W 340 -32.73 REMARK 500 MET W 351 -13.80 REMARK 500 ILE W 352 11.80 REMARK 500 THR W 357 -23.87 REMARK 500 MET W 360 15.15 REMARK 500 GLY W 363 10.29 REMARK 500 ILE W 437 28.28 REMARK 500 LYS W 442 41.78 REMARK 500 LYS W 448 23.35 REMARK 500 VAL W 450 -11.23 REMARK 500 SER W 451 -13.10 REMARK 500 LEU W 480 -39.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DUL RELATED DB: PDB REMARK 900 STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLISIGNAL REMARK 900 RECOGNITION PARTICLE REMARK 900 RELATED ID: 1HQ1 RELATED DB: PDB REMARK 900 STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY REMARK 900 AUNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITIONPARTICLE REMARK 900 RELATED ID: 1P85 RELATED DB: PDB REMARK 900 REAL SPACE REFINED COORDINATES OF THE 50S SUBUNIT FITTEDINTO THE REMARK 900 LOW RESOLUTION CRYO- EM MAP OF THE EF-G.GTP STATEOF E. COLI 70S REMARK 900 RIBOSOME REMARK 900 RELATED ID: 1P86 RELATED DB: PDB REMARK 900 REAL SPACE REFINED COORDINATES OF THE 50S SUBUNIT FITTEDINTO THE REMARK 900 LOW RESOLUTION CRYO- EM MAP OF THE INITIATION-LIKESTATE OF E. COLI REMARK 900 70S RIBOSOME REMARK 900 RELATED ID: 2AW4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT REMARK 900 3.5 A RESOLUTION. THIS FILE CONTAINSTHE 50S SUBUNIT OF ONE 70S REMARK 900 RIBOSOME. THE ENTIRE CRYSTALSTRUCTURE CONTAINS TWO 70S RIBOSOMES REMARK 900 AND IS DESCRIBED IN REMARK 400. REMARK 900 RELATED ID: 2AWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT REMARK 900 3.5 A RESOLUTION. REMARK 900 RELATED ID: 2J28 RELATED DB: PDB REMARK 900 MODEL OF E. COLI SRP BOUND TO 70S RNCS REMARK 900 RELATED ID: EMD-1264 RELATED DB: EMDB REMARK 900 E.COLI SRP BOUND TO 80S RNCS VOLUME DATA DBREF 2J37 4 1 152 PDB 2J37 2J37 1 152 DBREF 2J37 5 1 124 UNP Q8L805 RL35_WHEAT 1 124 DBREF 2J37 6 1 123 PDB 2J37 2J37 1 123 DBREF 2J37 A 112 239 PDB 2J37 2J37 112 239 DBREF 2J37 B 13 13 PDB 2J37 2J37 13 13 DBREF 2J37 B 14 120 UNP P09132 SRP19_HUMAN 14 120 DBREF 2J37 S 50 66 PDB 2J37 2J37 50 66 DBREF 2J37 W 1 504 UNP P61010 SRP54_CANFA 1 504 DBREF 2J37 Z 1 280 PDB 2J37 2J37 1 280 SEQRES 1 4 152 MET ALA PRO LYS VAL ALA VAL ALA LYS LYS GLY ASP ALA SEQRES 2 4 152 LYS ALA GLN ALA ALA LYS VAL ALA LYS ALA VAL LYS SER SEQRES 3 4 152 GLY SER ILE LYS LYS THR ALA LYS LYS ILE ARG THR SER SEQRES 4 4 152 VAL THR PHE HIS ARG PRO LYS THR LEU SER LYS ALA ARG SEQRES 5 4 152 ASP PRO LYS TYR PRO ARG ILE SER THR PRO GLY ARG ASN SEQRES 6 4 152 LYS LEU ASP GLN TYR GLN ILE LEU LYS TYR PRO LEU THR SEQRES 7 4 152 THR GLU SER ALA MET LYS LYS ILE GLU ASP ASN ASN THR SEQRES 8 4 152 LEU VAL PHE ILE VAL ASP LEU LYS ALA ASP LYS LYS LYS SEQRES 9 4 152 ILE LYS ALA ALA VAL LYS LYS MET TYR ASP ILE GLN ALA SEQRES 10 4 152 LYS LYS VAL ASN THR LEU ILE ARG PRO ASP GLY LYS LYS SEQRES 11 4 152 LYS ALA TYR VAL LYS LEU THR PRO ASP TYR ASP ALA LEU SEQRES 12 4 152 ASP VAL ALA ASN LYS ILE GLY ILE ILE SEQRES 1 5 124 MET SER SER GLY LYS VAL LYS ALA GLY GLU LEU TRP ASN SEQRES 2 5 124 LYS SER LYS ASP ASP LEU THR LYS GLN LEU ALA GLU LEU SEQRES 3 5 124 LYS THR GLU LEU GLY GLN LEU ARG ILE GLN LYS VAL ALA SEQRES 4 5 124 SER SER GLY SER LYS LEU ASN ARG ILE HIS ASP ILE ARG SEQRES 5 5 124 LYS SER ILE ALA ARG VAL LEU THR VAL ILE ASN ALA LYS SEQRES 6 5 124 GLN ARG ALA GLN LEU ARG LEU PHE TYR LYS ASN LYS LYS SEQRES 7 5 124 TYR ALA PRO LEU ASP LEU ARG ALA LYS GLN THR ARG ALA SEQRES 8 5 124 ILE ARG ARG ARG LEU SER PRO ASP GLU LYS SER ARG VAL SEQRES 9 5 124 LEU GLU LYS THR LYS LYS ARG THR VAL HIS PHE PRO GLN SEQRES 10 5 124 ARG LYS PHE ALA ILE LYS ALA SEQRES 1 6 123 MET SER GLU LYS LYS ARG ALA PRO GLY PRO ARG LYS ASP SEQRES 2 6 123 GLU VAL VAL THR ARG GLU TYR THR VAL ASN LEU HIS LYS SEQRES 3 6 123 ARG LEU HIS GLY CYS THR PHE LYS LYS LYS ALA PRO ASN SEQRES 4 6 123 ALA ILE LYS GLU ILE ARG LYS PHE ALA GLN LYS ALA MET SEQRES 5 6 123 GLY THR ASN ASP VAL ARG ILE ASP VAL LYS LEU ASN LYS SEQRES 6 6 123 HIS ILE TRP SER SER GLY ILE ARG SER VAL PRO ARG ARG SEQRES 7 6 123 VAL ARG VAL ARG ILE ALA ARG LYS ARG ASN ASP GLU GLU SEQRES 8 6 123 ASP ALA LYS GLU GLU LEU TYR SER LEU VAL THR VAL ALA SEQRES 9 6 123 GLU VAL PRO GLN GLU GLY LEU LYS GLY LEU GLY THR LYS SEQRES 10 6 123 VAL VAL GLU ASP GLU ASP SEQRES 1 A 128 G A C A C U A A G U U C G SEQRES 2 A 128 G C A U C A A U A U G G U SEQRES 3 A 128 G A C C U C C C G G G A G SEQRES 4 A 128 C G G G G G A C C A C C A SEQRES 5 A 128 G G U U G C C U A A G G A SEQRES 6 A 128 G G G G U G A A C C G G C SEQRES 7 A 128 C C A G G U C G G A A A C SEQRES 8 A 128 G G A G C A G G U C A A A SEQRES 9 A 128 A C U C C C G U G C U G A SEQRES 10 A 128 U C A G U A G U G U C SEQRES 1 B 108 MET ARG PHE ILE CYS ILE TYR PRO ALA TYR LEU ASN ASN SEQRES 2 B 108 LYS LYS THR ILE ALA GLU GLY ARG ARG ILE PRO ILE SER SEQRES 3 B 108 LYS ALA VAL GLU ASN PRO THR ALA THR GLU ILE GLN ASP SEQRES 4 B 108 VAL CYS SER ALA VAL GLY LEU ASN VAL PHE LEU GLU LYS SEQRES 5 B 108 ASN LYS MET TYR SER ARG GLU TRP ASN ARG ASP VAL GLN SEQRES 6 B 108 TYR ARG GLY ARG VAL ARG VAL GLN LEU LYS GLN GLU ASP SEQRES 7 B 108 GLY SER LEU CYS LEU VAL GLN PHE PRO SER ARG LYS SER SEQRES 8 B 108 VAL MET LEU TYR ALA ALA GLU MET ILE PRO LYS LEU LYS SEQRES 9 B 108 THR ARG THR GLN SEQRES 1 S 17 LEU GLY PHE PRO ILE ASN PHE LEU THR LEU TYR VAL THR SEQRES 2 S 17 VAL GLN HIS LYS SEQRES 1 W 504 MET VAL LEU ALA ASP LEU GLY ARG LYS ILE THR SER ALA SEQRES 2 W 504 LEU ARG SER LEU SER ASN ALA THR ILE ILE ASN GLU GLU SEQRES 3 W 504 VAL LEU ASN ALA MET LEU LYS GLU VAL CYS THR ALA LEU SEQRES 4 W 504 LEU GLU ALA ASP VAL ASN ILE LYS LEU VAL LYS GLN LEU SEQRES 5 W 504 ARG GLU ASN VAL LYS SER ALA ILE ASP LEU GLU GLU MET SEQRES 6 W 504 ALA SER GLY LEU ASN LYS ARG LYS MET ILE GLN HIS ALA SEQRES 7 W 504 VAL PHE LYS GLU LEU VAL LYS LEU VAL ASP PRO GLY VAL SEQRES 8 W 504 LYS ALA TRP THR PRO THR LYS GLY LYS GLN ASN VAL ILE SEQRES 9 W 504 MET PHE VAL GLY LEU GLN GLY SER GLY LYS THR THR THR SEQRES 10 W 504 CYS SER LYS LEU ALA TYR TYR TYR GLN ARG LYS GLY TRP SEQRES 11 W 504 LYS THR CYS LEU ILE CYS ALA ASP THR PHE ARG ALA GLY SEQRES 12 W 504 ALA PHE ASP GLN LEU LYS GLN ASN ALA THR LYS ALA ARG SEQRES 13 W 504 ILE PRO PHE TYR GLY SER TYR THR GLU MET ASP PRO VAL SEQRES 14 W 504 ILE ILE ALA SER GLU GLY VAL GLU LYS PHE LYS ASN GLU SEQRES 15 W 504 ASN PHE GLU ILE ILE ILE VAL ASP THR SER GLY ARG HIS SEQRES 16 W 504 LYS GLN GLU ASP SER LEU PHE GLU GLU MET LEU GLN VAL SEQRES 17 W 504 ALA ASN ALA ILE GLN PRO ASP ASN ILE VAL TYR VAL MET SEQRES 18 W 504 ASP ALA SER ILE GLY GLN ALA CYS GLU ALA GLN ALA LYS SEQRES 19 W 504 ALA PHE LYS ASP LYS VAL ASP VAL ALA SER VAL ILE VAL SEQRES 20 W 504 THR LYS LEU ASP GLY HIS ALA LYS GLY GLY GLY ALA LEU SEQRES 21 W 504 SER ALA VAL ALA ALA THR LYS SER PRO ILE ILE PHE ILE SEQRES 22 W 504 GLY THR GLY GLU HIS ILE ASP ASP PHE GLU PRO PHE LYS SEQRES 23 W 504 THR GLN PRO PHE ILE SER LYS LEU LEU GLY MET GLY ASP SEQRES 24 W 504 ILE GLU GLY LEU ILE ASP LYS VAL ASN GLU LEU LYS LEU SEQRES 25 W 504 ASP ASP ASN GLU ALA LEU ILE GLU LYS LEU LYS HIS GLY SEQRES 26 W 504 GLN PHE THR LEU ARG ASP MET TYR GLU GLN PHE GLN ASN SEQRES 27 W 504 ILE MET LYS MET GLY PRO PHE SER GLN ILE LEU GLY MET SEQRES 28 W 504 ILE PRO GLY PHE GLY THR ASP PHE MET SER LYS GLY ASN SEQRES 29 W 504 GLU GLN GLU SER MET ALA ARG LEU LYS LYS LEU MET THR SEQRES 30 W 504 ILE MET ASP SER MET ASN ASP GLN GLU LEU ASP SER THR SEQRES 31 W 504 ASP GLY ALA LYS VAL PHE SER LYS GLN PRO GLY ARG ILE SEQRES 32 W 504 GLN ARG VAL ALA ARG GLY SER GLY VAL SER THR ARG ASP SEQRES 33 W 504 VAL GLN GLU LEU LEU THR GLN TYR THR LYS PHE ALA GLN SEQRES 34 W 504 MET VAL LYS LYS MET GLY GLY ILE LYS GLY LEU PHE LYS SEQRES 35 W 504 GLY GLY ASP MET SER LYS ASN VAL SER GLN SER GLN MET SEQRES 36 W 504 ALA LYS LEU ASN GLN GLN MET ALA LYS MET MET ASP PRO SEQRES 37 W 504 ARG VAL LEU HIS HIS MET GLY GLY MET ALA GLY LEU GLN SEQRES 38 W 504 SER MET MET ARG GLN PHE GLN GLN GLY ALA ALA GLY ASN SEQRES 39 W 504 MET LYS GLY MET MET GLY PHE ASN ASN MET SEQRES 1 Z 280 C U G C A A A G U A C C C SEQRES 2 Z 280 U C A G A A G G G A G G C SEQRES 3 Z 280 G A A A U A G A G C A C A SEQRES 4 Z 280 G C G A U A G U C G G G U SEQRES 5 Z 280 G A G A A C C C C G A C G SEQRES 6 Z 280 G C C U A A U G G A U A A SEQRES 7 Z 280 G G G U U C C U C A G C A SEQRES 8 Z 280 C U G C U G A U C A G C U SEQRES 9 Z 280 G A G G G U U A G C C G G SEQRES 10 Z 280 U C C U A A G U C A U A C SEQRES 11 Z 280 C G C A A C U C G A C U A SEQRES 12 Z 280 U G A C G A A A U G G G A SEQRES 13 Z 280 A A C G G G U U A A U A U SEQRES 14 Z 280 U C C C G U G C C A C G G SEQRES 15 Z 280 G G U C G A U C A C G C U SEQRES 16 Z 280 G G G C A U C G C C C A G SEQRES 17 Z 280 U C G A A C C G U C C A A SEQRES 18 Z 280 C U C C G U G G A A G C C SEQRES 19 Z 280 G U A A U G G C A G G A A SEQRES 20 Z 280 G C G G A C G A A C G G C SEQRES 21 Z 280 G G C A U A G G G A A A C SEQRES 22 Z 280 G U G A U U C HELIX 1 1 THR 4 79 ASN 4 89 1 11 HELIX 2 2 LYS 4 102 ASP 4 114 1 13 HELIX 3 3 ALA 4 142 LYS 4 148 1 7 HELIX 4 4 LYS 5 7 LYS 5 14 1 8 HELIX 5 5 SER 5 15 ALA 5 39 1 25 HELIX 6 6 LEU 5 45 GLN 5 66 1 22 HELIX 7 7 LEU 6 24 CYS 6 31 5 8 HELIX 8 8 THR 6 32 LYS 6 34 5 3 HELIX 9 9 LYS 6 35 ALA 6 51 1 17 HELIX 10 10 ASP 6 60 TRP 6 68 1 9 HELIX 11 11 TYR B 19 LEU B 23 5 5 HELIX 12 12 THR B 45 SER B 54 1 10 HELIX 13 13 ALA B 55 GLY B 57 5 3 HELIX 14 14 ARG B 101 ILE B 112 1 12 HELIX 15 15 LEU B 115 GLN B 120 1 6 HELIX 16 16 LEU S 50 HIS S 65 1 16 HELIX 17 17 ASN W 24 LEU W 40 1 17 HELIX 18 18 VAL W 49 ASP W 61 1 13 HELIX 19 19 ASN W 70 ASP W 88 1 19 HELIX 20 20 GLY W 113 LYS W 128 1 16 HELIX 21 21 GLY W 143 ARG W 156 1 14 HELIX 22 22 ASP W 167 GLU W 182 1 16 HELIX 23 23 GLU W 198 GLN W 213 1 16 HELIX 24 24 ALA W 228 ASP W 241 1 14 HELIX 25 25 GLY W 257 LYS W 267 1 11 HELIX 26 26 LYS W 286 LYS W 293 1 8 HELIX 27 27 LEU W 303 ASN W 308 1 6 HELIX 28 28 GLY W 325 ARG W 330 5 6 HELIX 29 29 MET W 332 ILE W 339 1 8 HELIX 30 30 THR W 357 SER W 361 5 5 HELIX 31 31 GLU W 367 ASP W 380 1 14 HELIX 32 32 ASN W 383 SER W 389 1 7 HELIX 33 33 ASP W 391 GLN W 399 1 9 HELIX 34 34 PRO W 400 SER W 410 1 11 HELIX 35 35 SER W 413 GLN W 429 1 17 HELIX 36 36 LYS W 438 GLY W 443 1 6 HELIX 37 37 ASN W 449 ASN W 459 1 11 HELIX 38 38 MET W 465 GLY W 476 1 12 HELIX 39 39 GLN W 481 GLN W 488 1 8 SHEET 1 4A 4 TYR 4 75 PRO 4 76 0 SHEET 2 4A 4 THR 4 91 ILE 4 95 -1 N ILE 4 95 O TYR 4 75 SHEET 3 4A 4 LYS 4 131 LEU 4 136 -1 O ALA 4 132 N PHE 4 94 SHEET 4 4A 4 ALA 4 117 LEU 4 123 -1 N LYS 4 118 O LYS 4 135 SHEET 1 6A 4 ARG 6 18 VAL 6 22 0 SHEET 2 6A 4 VAL 6 79 LYS 6 86 -1 O VAL 6 79 N VAL 6 22 SHEET 3 6A 4 GLU 6 91 GLU 6 95 -1 O GLU 6 91 N LYS 6 86 SHEET 4 6A 4 ARG 6 58 ILE 6 59 1 O ARG 6 58 N LYS 6 94 SHEET 1 BA 3 ILE B 16 ILE B 18 0 SHEET 2 BA 3 ARG B 81 GLN B 85 -1 O VAL B 82 N ILE B 18 SHEET 3 BA 3 ASN B 59 GLU B 63 -1 O ASN B 59 N GLN B 85 SHEET 1 WA 8 PHE W 159 GLY W 161 0 SHEET 2 WA 8 THR W 132 ALA W 137 1 O LEU W 134 N TYR W 160 SHEET 3 WA 8 ILE W 186 THR W 191 1 O ILE W 186 N CYS W 133 SHEET 4 WA 8 ASN W 102 VAL W 107 1 O ASN W 102 N ILE W 187 SHEET 5 WA 8 ASN W 216 ASP W 222 1 O ASN W 216 N MET W 105 SHEET 6 WA 8 VAL W 245 THR W 248 1 O ILE W 246 N MET W 221 SHEET 7 WA 8 ILE W 270 GLY W 274 1 N ILE W 271 O VAL W 245 SHEET 8 WA 8 PHE W 282 GLU W 283 -1 O GLU W 283 N ILE W 273 CISPEP 1 ARG 4 125 PRO 4 126 0 9.95 CISPEP 2 LYS W 321 LEU W 322 0 29.46 CISPEP 3 MET W 434 GLY W 435 0 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000