HEADER TOXIN 23-AUG-06 2J3V TITLE CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONENT C2-I OF THE C2-TOXIN FROM TITLE 2 CLOSTRIDIUM BOTULINUM AT PH 3.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C2 TOXIN COMPONENT I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE C2-I; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-3B KEYWDS ADP-RIBOSYLTRANSFERASE, TOXIN, CLOSTRIDIUM BOTULINUM EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHLEBERGER,H.HOCHMANN,H.BARTH,K.AKTORIES,G.E.SCHULZ REVDAT 5 08-MAY-24 2J3V 1 REMARK REVDAT 4 08-MAY-19 2J3V 1 REMARK REVDAT 3 24-FEB-09 2J3V 1 VERSN REVDAT 2 30-NOV-06 2J3V 1 JRNL REVDAT 1 11-OCT-06 2J3V 0 JRNL AUTH C.SCHLEBERGER,H.HOCHMANN,H.BARTH,K.AKTORIES,G.E.SCHULZ JRNL TITL STRUCTURE AND ACTION OF THE BINARY C2 TOXIN FROM CLOSTRIDIUM JRNL TITL 2 BOTULINUM. JRNL REF J.MOL.BIOL. V. 364 705 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17027031 JRNL DOI 10.1016/J.JMB.2006.09.002 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4270 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.29000 REMARK 3 B22 (A**2) : 2.29000 REMARK 3 B33 (A**2) : -3.44000 REMARK 3 B12 (A**2) : 1.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3666 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3285 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4929 ; 1.901 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7703 ; 3.707 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;31.648 ;25.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;16.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;23.933 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3888 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 685 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 769 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3033 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1777 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1814 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 84 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2142 ; 0.896 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3488 ; 1.663 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 2.689 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1441 ; 4.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290029814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 3.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 85.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10 MG/ML IN H2O RESERVOIR: REMARK 280 0.8 M (NH4)2SO4, 0.1 M CITRATE PH 3.0, HANGING DROP:1:1, PH 3.00, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.34050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.34050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.34050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 81.34050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.34050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.34050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 20 TO GLU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 307 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 3 97.87 55.74 REMARK 500 THR A 171 -8.47 87.02 REMARK 500 ASP A 179 -164.15 -111.66 REMARK 500 TYR A 222 -132.13 50.20 REMARK 500 SER A 255 -35.03 -143.52 REMARK 500 ASN A 411 -169.45 -162.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1455 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1456 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1460 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1433 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1434 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1435 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1437 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1438 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1439 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1440 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1442 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1443 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1445 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1446 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J3X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONENT C2-I OF THE C2-TOXIN REMARK 900 FROM CLOSTRIDIUM BOTULINUM AT PH 3.0 (MUT-S361R) REMARK 900 RELATED ID: 2J3Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EZYMATIC COMPONENT C2-I OF THE C2-TOXIN REMARK 900 FROM CLOSTRIDIUM BOTULINUM AT PH 6.1 DBREF 2J3V A 1 431 UNP O69275 O69275_CLOBO 1 431 SEQADV 2J3V GLU A 20 UNP O69275 LYS 20 ENGINEERED MUTATION SEQADV 2J3V GLN A 77 UNP O69275 HIS 77 CONFLICT SEQADV 2J3V ASP A 121 UNP O69275 ASN 121 CONFLICT SEQRES 1 A 431 MET PRO ILE ILE LYS GLU PRO ILE ASP PHE ILE ASN LYS SEQRES 2 A 431 PRO GLU SER GLU ALA LYS GLU TRP GLY LYS GLU GLU GLU SEQRES 3 A 431 LYS ARG TRP PHE THR LYS LEU ASN ASN LEU GLU GLU VAL SEQRES 4 A 431 ALA VAL ASN GLN LEU LYS ASN LYS GLU TYR LYS THR LYS SEQRES 5 A 431 ILE ASP ASN PHE SER THR ASP ILE LEU PHE SER SER LEU SEQRES 6 A 431 THR ALA ILE GLU ILE MET LYS GLU ASP GLU ASN GLN ASN SEQRES 7 A 431 LEU PHE ASP VAL GLU ARG ILE ARG GLU ALA LEU LEU LYS SEQRES 8 A 431 ASN THR LEU ASP ARG ASP ALA ILE GLY TYR VAL ASN PHE SEQRES 9 A 431 THR PRO LYS GLU LEU GLY ILE ASN PHE SER ILE ARG ASP SEQRES 10 A 431 VAL GLU LEU ASP ARG ASP ILE SER ASP GLU THR LEU ASP SEQRES 11 A 431 LYS VAL ARG GLN GLN ILE ILE ASN GLN GLU TYR THR LYS SEQRES 12 A 431 PHE SER PHE ILE SER LEU GLY LEU ASN ASP ASN SER ILE SEQRES 13 A 431 ASN GLU SER VAL PRO VAL ILE VAL LYS THR ARG VAL PRO SEQRES 14 A 431 THR THR PHE ASP TYR GLY VAL LEU ASN ASP LYS GLU THR SEQRES 15 A 431 VAL SER LEU LEU LEU ASN GLN GLY PHE SER ILE ILE PRO SEQRES 16 A 431 GLU SER ALA ILE ILE THR THR ILE LYS GLY LYS ASP TYR SEQRES 17 A 431 ILE LEU ILE GLU GLY SER LEU SER GLN GLU LEU ASP PHE SEQRES 18 A 431 TYR ASN LYS GLY SER GLU ALA TRP GLY ALA GLU ASN TYR SEQRES 19 A 431 GLY ASP TYR ILE SER LYS LEU SER HIS GLU GLN LEU GLY SEQRES 20 A 431 ALA LEU GLU GLY TYR LEU HIS SER ASP TYR LYS ALA ILE SEQRES 21 A 431 ASN SER TYR LEU ARG ASN ASN ARG VAL PRO ASN ASN ASP SEQRES 22 A 431 GLU LEU ASN LYS LYS ILE GLU LEU ILE SER SER ALA LEU SEQRES 23 A 431 SER VAL LYS PRO ILE PRO GLN THR LEU ILE ALA TYR ARG SEQRES 24 A 431 ARG VAL ASP GLY ILE PRO PHE ASP LEU PRO SER ASP PHE SEQRES 25 A 431 SER PHE ASP LYS LYS GLU ASN GLY GLU ILE ILE ALA ASP SEQRES 26 A 431 LYS GLN LYS LEU ASN GLU PHE ILE ASP LYS TRP THR GLY SEQRES 27 A 431 LYS GLU ILE GLU ASN LEU SER PHE SER SER THR SER LEU SEQRES 28 A 431 LYS SER THR PRO SER SER PHE SER LYS SER ARG PHE ILE SEQRES 29 A 431 PHE ARG LEU ARG LEU SER GLU GLY ALA ILE GLY ALA PHE SEQRES 30 A 431 ILE TYR GLY PHE SER GLY PHE GLN ASP GLU GLN GLU ILE SEQRES 31 A 431 LEU LEU ASN LYS ASN SER THR PHE LYS ILE PHE ARG ILE SEQRES 32 A 431 THR PRO ILE THR SER ILE ILE ASN ARG VAL THR LYS MET SEQRES 33 A 431 THR GLN VAL VAL ILE ASP ALA GLU GLY ILE GLN ASN LYS SEQRES 34 A 431 GLU ILE HET GOL A1432 6 HET GOL A1433 6 HET GOL A1434 6 HET GOL A1435 6 HET GOL A1436 6 HET GOL A1437 6 HET GOL A1438 6 HET GOL A1439 6 HET GOL A1440 6 HET GOL A1441 6 HET GOL A1442 6 HET GOL A1443 6 HET GOL A1444 6 HET GOL A1445 6 HET GOL A1446 6 HET SO4 A1447 5 HET SO4 A1448 5 HET SO4 A1449 5 HET SO4 A1450 5 HET SO4 A1451 5 HET SO4 A1452 5 HET SO4 A1453 5 HET SO4 A1454 5 HET SO4 A1455 5 HET SO4 A1456 5 HET SO4 A1457 5 HET SO4 A1458 5 HET SO4 A1459 5 HET SO4 A1460 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 15(C3 H8 O3) FORMUL 17 SO4 14(O4 S 2-) FORMUL 31 HOH *325(H2 O) HELIX 1 1 PRO A 14 THR A 31 1 18 HELIX 2 2 ASN A 34 LEU A 44 1 11 HELIX 3 3 ASN A 46 ILE A 60 1 15 HELIX 4 4 SER A 64 ASP A 74 1 11 HELIX 5 5 ASN A 76 LYS A 91 1 16 HELIX 6 6 PRO A 106 GLY A 110 5 5 HELIX 7 7 SER A 125 ILE A 137 1 13 HELIX 8 8 ASN A 152 ILE A 156 5 5 HELIX 9 9 SER A 226 GLY A 235 1 10 HELIX 10 10 ASP A 236 LEU A 241 1 6 HELIX 11 11 SER A 242 SER A 255 1 14 HELIX 12 12 ASP A 256 ASN A 266 1 11 HELIX 13 13 ASN A 272 SER A 287 1 16 HELIX 14 14 GLY A 303 ASP A 307 5 5 HELIX 15 15 ASP A 325 THR A 337 1 13 HELIX 16 16 PRO A 355 SER A 359 5 5 SHEET 1 AA 5 ALA A 98 VAL A 102 0 SHEET 2 AA 5 VAL A 162 VAL A 168 -1 O VAL A 164 N VAL A 102 SHEET 3 AA 5 LYS A 206 GLN A 217 1 O ILE A 209 N ILE A 163 SHEET 4 AA 5 PHE A 191 ILE A 203 -1 O SER A 192 N SER A 216 SHEET 5 AA 5 TYR A 141 LYS A 143 -1 O TYR A 141 N ILE A 193 SHEET 1 AB 3 ILE A 147 GLY A 150 0 SHEET 2 AB 3 VAL A 183 LEU A 187 -1 O VAL A 183 N LEU A 151 SHEET 3 AB 3 GLY A 175 ASN A 178 0 SHEET 1 AC 5 LEU A 295 VAL A 301 0 SHEET 2 AC 5 PHE A 363 LEU A 369 -1 O PHE A 363 N VAL A 301 SHEET 3 AC 5 THR A 414 ILE A 426 1 O VAL A 419 N ILE A 364 SHEET 4 AC 5 SER A 396 ASN A 411 -1 O THR A 397 N ILE A 426 SHEET 5 AC 5 LYS A 339 ASN A 343 -1 O ILE A 341 N PHE A 398 SHEET 1 AD 2 ASP A 315 GLU A 318 0 SHEET 2 AD 2 GLU A 321 ALA A 324 -1 O GLU A 321 N GLU A 318 SHEET 1 AE 3 SER A 347 SER A 350 0 SHEET 2 AE 3 GLU A 389 LEU A 392 -1 O ILE A 390 N THR A 349 SHEET 3 AE 3 GLY A 375 PHE A 377 -1 O ALA A 376 N LEU A 391 CISPEP 1 VAL A 269 PRO A 270 0 -4.77 SITE 1 AC1 10 LYS A 72 GLU A 83 ARG A 86 LYS A 224 SITE 2 AC1 10 GLY A 235 TYR A 379 GOL A1433 HOH A2166 SITE 3 AC1 10 HOH A2307 HOH A2308 SITE 1 AC2 6 GLU A 119 LEU A 120 SER A 313 ARG A 362 SITE 2 AC2 6 HOH A2309 HOH A2310 SITE 1 AC3 8 LYS A 352 PRO A 355 SER A 356 HOH A2242 SITE 2 AC3 8 HOH A2243 HOH A2311 HOH A2312 HOH A2313 SITE 1 AC4 5 PRO A 14 GLU A 15 SER A 16 ILE A 426 SITE 2 AC4 5 GLN A 427 SITE 1 AC5 8 SER A 114 ILE A 115 ARG A 116 PRO A 161 SITE 2 AC5 8 LYS A 328 HOH A2225 HOH A2314 HOH A2315 SITE 1 AC6 5 LYS A 50 THR A 51 ASP A 54 ASN A 103 SITE 2 AC6 5 HOH A2316 SITE 1 AC7 6 PHE A 113 LYS A 131 LYS A 335 HOH A2317 SITE 2 AC7 6 HOH A2318 HOH A2319 SITE 1 AC8 2 LYS A 339 GLU A 340 SITE 1 AC9 3 ASN A 34 ASN A 35 HOH A2320 SITE 1 BC1 9 TRP A 21 GLU A 25 ARG A 28 ARG A 96 SITE 2 BC1 9 TYR A 174 GLU A 371 HOH A2032 HOH A2201 SITE 3 BC1 9 HOH A2321 SITE 1 BC2 7 THR A 66 GLU A 69 SER A 382 GLY A 383 SITE 2 BC2 7 GLN A 385 HOH A2261 HOH A2322 SITE 1 BC3 6 ARG A 268 ILE A 279 GLU A 280 LYS A 394 SITE 2 BC3 6 HOH A2195 HOH A2197 SITE 1 BC4 6 SER A 226 GLU A 227 ALA A 228 HOH A2323 SITE 2 BC4 6 HOH A2324 HOH A2325 SITE 1 BC5 7 LYS A 32 LYS A 91 ASN A 92 THR A 93 SITE 2 BC5 7 GOL A1445 HOH A2074 HOH A2075 SITE 1 BC6 5 ARG A 299 ARG A 300 SER A 348 HOH A2293 SITE 2 BC6 5 HOH A2294 SITE 1 BC7 7 ILE A 60 ILE A 68 ARG A 86 ASN A 223 SITE 2 BC7 7 GOL A1437 SO4 A1447 HOH A2308 SITE 1 BC8 8 ARG A 299 PHE A 346 SER A 347 SER A 348 SITE 2 BC8 8 HOH A2241 HOH A2295 HOH A2296 HOH A2297 SITE 1 BC9 5 ASN A 34 GLU A 37 GLU A 87 LYS A 91 SITE 2 BC9 5 LYS A 240 SITE 1 CC1 4 PHE A 56 ASN A 76 ASN A 78 HOH A2298 SITE 1 CC2 5 ARG A 86 LYS A 224 GOL A1433 HOH A2158 SITE 2 CC2 5 HOH A2299 SITE 1 CC3 7 GLY A 190 GLN A 217 GLU A 218 LEU A 219 SITE 2 CC3 7 ASP A 220 TYR A 222 HOH A2143 SITE 1 CC4 6 PRO A 405 ILE A 406 THR A 407 HOH A2051 SITE 2 CC4 6 HOH A2288 HOH A2300 SITE 1 CC5 10 THR A 58 GLU A 108 THR A 142 LYS A 143 SITE 2 CC5 10 PHE A 144 SER A 145 ARG A 402 HOH A2280 SITE 3 CC5 10 HOH A2301 HOH A2302 SITE 1 CC6 4 SER A 125 ASP A 126 GLU A 127 HOH A2100 SITE 1 CC7 3 THR A 105 PRO A 106 LYS A 107 SITE 1 CC8 1 ARG A 133 SITE 1 CC9 4 GLU A 6 THR A 294 HOH A2113 HOH A2304 SITE 1 DC1 4 ARG A 28 LYS A 32 SO4 A1460 HOH A2305 SITE 1 DC2 5 PHE A 172 ASP A 173 ASN A 188 GLN A 217 SITE 2 DC2 5 HOH A2154 CRYST1 114.811 114.811 162.681 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008710 0.005029 0.000000 0.00000 SCALE2 0.000000 0.010057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006147 0.00000