data_2J4A # _entry.id 2J4A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2J4A PDBE EBI-29754 WWPDB D_1290029754 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1BSX unspecified 'STRUCTURE AND SPECIFICITY OF NUCLEAR RECEPTOR -COACTIVATOR INTERACTIONS' PDB 1N46 unspecified 'CRYSTAL STRUCTURE OF HUMAN TR BETA LIGAND- BINDING DOMAINCOMPLEXED WITH A POTENT SUBTYPE -SELECTIVE THYROMIMETIC' PDB 1NAX unspecified 'THYROID RECEPTOR BETA1 IN COMPLEX WITH A BETA-SELECTIVELIGAND' PDB 1NQ0 unspecified 'TR RECEPTOR MUTATIONS CONFERRING HORMONE RESISTANCE ANDREDUCED COREPRESSOR RELEASE EXHIBIT DECREASED STABILITY INTHE NTERMINAL LBD' PDB 1NQ1 unspecified 'TR RECEPTOR MUTATIONS CONFERRING HORMONE RESISTANCE ANDREDUCED COREPRESSOR RELEASE EXHIBIT DECREASED STABILITY INTHE NTERMINAL LBD' PDB 1NQ2 unspecified 'TWO RTH MUTANTS WITH IMPAIRED HORMONE BINDING' PDB 1NUO unspecified 'TWO RTH MUTANTS WITH IMPAIRED HORMONE BINDING' PDB 1Q4X unspecified 'CRYSTAL STRUCTURE OF HUMAN THYROID HORMONE RECEPTOR BETALBD IN COMPLEX WITH SPECIFIC AGONIST GC-24' PDB 1R6G unspecified 'CRYSTAL STRUCTURE OF THE THYROID HORMONE RECEPTOR BETALIGAND BINDING DOMAIN IN COMPLEX WITH A BETA SELECTIVECOMPOUND' PDB 1XZX unspecified 'THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS' PDB 1Y0X unspecified 'THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS' PDB 2H6W unspecified 'THYROID HORMONE RECEPTOR BOUND TO T3' PDB 2NLL unspecified ;RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DEOXYRIBONUCLEIC ACID-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DEOXYRIBONUCLEIC ACID ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2J4A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-08-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Farnegardh, M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Thyroid Receptor Ligands. 6. A High Affinity "Direct Antagonist" Selective for the Thyroid Hormone Receptor. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 49 _citation.page_first 6635 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17154490 _citation.pdbx_database_id_DOI 10.1021/JM060521I # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koehler, K.' 1 ? primary 'Gordon, S.' 2 ? primary 'Brandt, P.' 3 ? primary 'Carlsson, B.' 4 ? primary 'Backsbro-Saedi, A.' 5 ? primary 'Apelqvist, T.' 6 ? primary 'Agback, P.' 7 ? primary 'Grover, G.J.' 8 ? primary 'Nelson, W.' 9 ? primary 'Grynfarb, M.' 10 ? primary 'Farnegardh, M.' 11 ? primary 'Rehnmark, S.' 12 ? primary 'Malm, J.' 13 ? # _cell.entry_id 2J4A _cell.length_a 77.212 _cell.length_b 107.422 _cell.length_c 67.208 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J4A _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'THYROID HORMONE RECEPTOR BETA-1' 28555.057 1 ? YES 'LIGAND BINDING DOMAIN, RESIDUES 209-461' ? 2 non-polymer syn '3,5-DIBROMO-4-(3-ISOPROPYL-PHENOXY)BENZOIC ACID' 458.141 1 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'THYROID HORMONE RECEPTOR BETA LBD' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED ; _entity_poly.pdbx_seq_one_letter_code_can ;GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 LYS n 1 4 PRO n 1 5 GLU n 1 6 PRO n 1 7 THR n 1 8 ASP n 1 9 GLU n 1 10 GLU n 1 11 TRP n 1 12 GLU n 1 13 LEU n 1 14 ILE n 1 15 LYS n 1 16 THR n 1 17 VAL n 1 18 THR n 1 19 GLU n 1 20 ALA n 1 21 HIS n 1 22 VAL n 1 23 ALA n 1 24 THR n 1 25 ASN n 1 26 ALA n 1 27 GLN n 1 28 GLY n 1 29 SER n 1 30 HIS n 1 31 TRP n 1 32 LYS n 1 33 GLN n 1 34 LYS n 1 35 ARG n 1 36 LYS n 1 37 PHE n 1 38 LEU n 1 39 PRO n 1 40 GLU n 1 41 ASP n 1 42 ILE n 1 43 GLY n 1 44 GLN n 1 45 ALA n 1 46 PRO n 1 47 ILE n 1 48 VAL n 1 49 ASN n 1 50 ALA n 1 51 PRO n 1 52 GLU n 1 53 GLY n 1 54 GLY n 1 55 LYS n 1 56 VAL n 1 57 ASP n 1 58 LEU n 1 59 GLU n 1 60 ALA n 1 61 PHE n 1 62 SER n 1 63 HIS n 1 64 PHE n 1 65 THR n 1 66 LYS n 1 67 ILE n 1 68 ILE n 1 69 THR n 1 70 PRO n 1 71 ALA n 1 72 ILE n 1 73 THR n 1 74 ARG n 1 75 VAL n 1 76 VAL n 1 77 ASP n 1 78 PHE n 1 79 ALA n 1 80 LYS n 1 81 LYS n 1 82 LEU n 1 83 PRO n 1 84 MET n 1 85 PHE n 1 86 CYS n 1 87 GLU n 1 88 LEU n 1 89 PRO n 1 90 CYS n 1 91 GLU n 1 92 ASP n 1 93 GLN n 1 94 ILE n 1 95 ILE n 1 96 LEU n 1 97 LEU n 1 98 LYS n 1 99 GLY n 1 100 CYS n 1 101 CYS n 1 102 MET n 1 103 GLU n 1 104 ILE n 1 105 MET n 1 106 SER n 1 107 LEU n 1 108 ARG n 1 109 ALA n 1 110 ALA n 1 111 VAL n 1 112 ARG n 1 113 TYR n 1 114 ASP n 1 115 PRO n 1 116 GLU n 1 117 SER n 1 118 GLU n 1 119 THR n 1 120 LEU n 1 121 THR n 1 122 LEU n 1 123 SER n 1 124 GLY n 1 125 GLU n 1 126 MET n 1 127 ALA n 1 128 VAL n 1 129 THR n 1 130 ARG n 1 131 GLY n 1 132 GLN n 1 133 LEU n 1 134 LYS n 1 135 ASN n 1 136 GLY n 1 137 GLY n 1 138 LEU n 1 139 GLY n 1 140 VAL n 1 141 VAL n 1 142 SER n 1 143 ASP n 1 144 ALA n 1 145 ILE n 1 146 PHE n 1 147 ASP n 1 148 LEU n 1 149 GLY n 1 150 MET n 1 151 SER n 1 152 LEU n 1 153 SER n 1 154 SER n 1 155 PHE n 1 156 ASN n 1 157 LEU n 1 158 ASP n 1 159 ASP n 1 160 THR n 1 161 GLU n 1 162 VAL n 1 163 ALA n 1 164 LEU n 1 165 LEU n 1 166 GLN n 1 167 ALA n 1 168 VAL n 1 169 LEU n 1 170 LEU n 1 171 MET n 1 172 SER n 1 173 SER n 1 174 ASP n 1 175 ARG n 1 176 PRO n 1 177 GLY n 1 178 LEU n 1 179 ALA n 1 180 CYS n 1 181 VAL n 1 182 GLU n 1 183 ARG n 1 184 ILE n 1 185 GLU n 1 186 LYS n 1 187 TYR n 1 188 GLN n 1 189 ASP n 1 190 SER n 1 191 PHE n 1 192 LEU n 1 193 LEU n 1 194 ALA n 1 195 PHE n 1 196 GLU n 1 197 HIS n 1 198 TYR n 1 199 ILE n 1 200 ASN n 1 201 TYR n 1 202 ARG n 1 203 LYS n 1 204 HIS n 1 205 HIS n 1 206 VAL n 1 207 THR n 1 208 HIS n 1 209 PHE n 1 210 TRP n 1 211 PRO n 1 212 LYS n 1 213 LEU n 1 214 LEU n 1 215 MET n 1 216 LYS n 1 217 VAL n 1 218 THR n 1 219 ASP n 1 220 LEU n 1 221 ARG n 1 222 MET n 1 223 ILE n 1 224 GLY n 1 225 ALA n 1 226 CYS n 1 227 HIS n 1 228 ALA n 1 229 SER n 1 230 ARG n 1 231 PHE n 1 232 LEU n 1 233 HIS n 1 234 MET n 1 235 LYS n 1 236 VAL n 1 237 GLU n 1 238 CYS n 1 239 PRO n 1 240 THR n 1 241 GLU n 1 242 LEU n 1 243 PHE n 1 244 PRO n 1 245 PRO n 1 246 LEU n 1 247 PHE n 1 248 LEU n 1 249 GLU n 1 250 VAL n 1 251 PHE n 1 252 GLU n 1 253 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THB1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P10828 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2J4A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10828 _struct_ref_seq.db_align_beg 209 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 461 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 209 _struct_ref_seq.pdbx_auth_seq_align_end 461 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2J4A _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 123 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P10828 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 331 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 331 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OEF non-polymer . '3,5-DIBROMO-4-(3-ISOPROPYL-PHENOXY)BENZOIC ACID' ? 'C18 H18 Br2 O4' 458.141 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2J4A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 47.80 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.45 M AMMONIUMSULFATE, 100 MMTRIS PH8.0, 100MM NDSB' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9330 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength 0.9330 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2J4A _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 14513 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.70 _reflns.B_iso_Wilson_estimate 20.4 _reflns.pdbx_redundancy 5.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2J4A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14450 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.2297 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2297 _refine.ls_R_factor_R_free 0.2729 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 725 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 31.9 _refine.aniso_B[1][1] 5.260 _refine.aniso_B[2][2] -10.571 _refine.aniso_B[3][3] 5.311 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.343697 _refine.solvent_model_param_bsol 35.8737 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2J4A _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.23 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.28 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1965 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 2096 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 57.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.82 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.19 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.82 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 2209 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 97.5 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 4.3 _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 OEF.PAR OEF.TOP # _struct.entry_id 2J4A _struct.title 'Human Thyroid hormone receptor beta ligand binding domain in complex with KB131084' _struct.pdbx_descriptor 'THYROID HORMONE RECEPTOR BETA-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2J4A _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text ;NUCLEAR PROTEIN, DISEASE MUTATION, NUCLEAR RECEPTOR, ZINC, RECEPTOR, DEAFNESS, ZINC-FINGER, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION, ALTERNATIVE SPLICING, LIGAND BINDING DOMAIN, POLYMORPHISM, METAL-BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? ASN A 25 ? THR A 215 ASN A 233 1 ? 19 HELX_P HELX_P2 2 HIS A 30 ? ARG A 35 ? HIS A 238 ARG A 243 1 ? 6 HELX_P HELX_P3 3 ASP A 57 ? LYS A 80 ? ASP A 265 LYS A 288 1 ? 24 HELX_P HELX_P4 4 LEU A 82 ? GLU A 87 ? LEU A 290 GLU A 295 1 ? 6 HELX_P HELX_P5 5 PRO A 89 ? VAL A 111 ? PRO A 297 VAL A 319 1 ? 23 HELX_P HELX_P6 6 ARG A 130 ? GLY A 136 ? ARG A 338 GLY A 344 1 ? 7 HELX_P HELX_P7 7 GLY A 139 ? SER A 153 ? GLY A 347 SER A 361 1 ? 15 HELX_P HELX_P8 8 ASP A 158 ? MET A 171 ? ASP A 366 MET A 379 1 ? 14 HELX_P HELX_P9 9 CYS A 180 ? LYS A 203 ? CYS A 388 LYS A 411 1 ? 24 HELX_P HELX_P10 10 HIS A 208 ? CYS A 238 ? HIS A 416 CYS A 446 1 ? 31 HELX_P HELX_P11 11 PRO A 239 ? PHE A 243 ? PRO A 447 PHE A 451 5 ? 5 HELX_P HELX_P12 12 PRO A 244 ? GLU A 252 ? PRO A 452 GLU A 460 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 36 ? PHE A 37 ? LYS A 244 PHE A 245 AA 2 MET A 126 ? THR A 129 ? MET A 334 THR A 337 AA 3 THR A 119 ? LEU A 122 ? THR A 327 LEU A 330 AA 4 TYR A 113 ? ASP A 114 ? TYR A 321 ASP A 322 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 O LYS A 36 ? O LYS A 244 N ALA A 127 ? N ALA A 335 AA 2 3 N VAL A 128 ? N VAL A 336 O LEU A 120 ? O LEU A 328 AA 3 4 O THR A 119 ? O THR A 327 N ASP A 114 ? N ASP A 322 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 20 _struct_site.details 'BINDING SITE FOR RESIDUE OEF A1461' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 PHE A 64 ? PHE A 272 . ? 1_555 ? 2 AC1 20 THR A 65 ? THR A 273 . ? 1_555 ? 3 AC1 20 ILE A 67 ? ILE A 275 . ? 1_555 ? 4 AC1 20 ILE A 68 ? ILE A 276 . ? 1_555 ? 5 AC1 20 ALA A 71 ? ALA A 279 . ? 1_555 ? 6 AC1 20 ARG A 74 ? ARG A 282 . ? 1_555 ? 7 AC1 20 MET A 102 ? MET A 310 . ? 1_555 ? 8 AC1 20 MET A 105 ? MET A 313 . ? 1_555 ? 9 AC1 20 ARG A 108 ? ARG A 316 . ? 1_555 ? 10 AC1 20 ARG A 112 ? ARG A 320 . ? 1_555 ? 11 AC1 20 LEU A 122 ? LEU A 330 . ? 1_555 ? 12 AC1 20 SER A 123 ? SER A 331 . ? 1_555 ? 13 AC1 20 LEU A 133 ? LEU A 341 . ? 1_555 ? 14 AC1 20 GLY A 136 ? GLY A 344 . ? 1_555 ? 15 AC1 20 ILE A 145 ? ILE A 353 . ? 1_555 ? 16 AC1 20 HIS A 227 ? HIS A 435 . ? 1_555 ? 17 AC1 20 MET A 234 ? MET A 442 . ? 1_555 ? 18 AC1 20 PHE A 247 ? PHE A 455 . ? 1_555 ? 19 AC1 20 HOH C . ? HOH A 2024 . ? 1_555 ? 20 AC1 20 HOH C . ? HOH A 2027 . ? 1_555 ? # _database_PDB_matrix.entry_id 2J4A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2J4A _atom_sites.fract_transf_matrix[1][1] 0.012951 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009309 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014879 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 209 ? ? ? A . n A 1 2 HIS 2 210 ? ? ? A . n A 1 3 LYS 3 211 211 LYS LYS A . n A 1 4 PRO 4 212 212 PRO PRO A . n A 1 5 GLU 5 213 213 GLU GLU A . n A 1 6 PRO 6 214 214 PRO PRO A . n A 1 7 THR 7 215 215 THR THR A . n A 1 8 ASP 8 216 216 ASP ASP A . n A 1 9 GLU 9 217 217 GLU GLU A . n A 1 10 GLU 10 218 218 GLU GLU A . n A 1 11 TRP 11 219 219 TRP TRP A . n A 1 12 GLU 12 220 220 GLU GLU A . n A 1 13 LEU 13 221 221 LEU LEU A . n A 1 14 ILE 14 222 222 ILE ILE A . n A 1 15 LYS 15 223 223 LYS LYS A . n A 1 16 THR 16 224 224 THR THR A . n A 1 17 VAL 17 225 225 VAL VAL A . n A 1 18 THR 18 226 226 THR THR A . n A 1 19 GLU 19 227 227 GLU GLU A . n A 1 20 ALA 20 228 228 ALA ALA A . n A 1 21 HIS 21 229 229 HIS HIS A . n A 1 22 VAL 22 230 230 VAL VAL A . n A 1 23 ALA 23 231 231 ALA ALA A . n A 1 24 THR 24 232 232 THR THR A . n A 1 25 ASN 25 233 233 ASN ASN A . n A 1 26 ALA 26 234 234 ALA ALA A . n A 1 27 GLN 27 235 235 GLN GLN A . n A 1 28 GLY 28 236 236 GLY GLY A . n A 1 29 SER 29 237 237 SER SER A . n A 1 30 HIS 30 238 238 HIS HIS A . n A 1 31 TRP 31 239 239 TRP TRP A . n A 1 32 LYS 32 240 240 LYS LYS A . n A 1 33 GLN 33 241 241 GLN GLN A . n A 1 34 LYS 34 242 242 LYS LYS A . n A 1 35 ARG 35 243 243 ARG ARG A . n A 1 36 LYS 36 244 244 LYS LYS A . n A 1 37 PHE 37 245 245 PHE PHE A . n A 1 38 LEU 38 246 246 LEU LEU A . n A 1 39 PRO 39 247 247 PRO PRO A . n A 1 40 GLU 40 248 248 GLU GLU A . n A 1 41 ASP 41 249 249 ASP ASP A . n A 1 42 ILE 42 250 250 ILE ILE A . n A 1 43 GLY 43 251 251 GLY GLY A . n A 1 44 GLN 44 252 252 GLN GLN A . n A 1 45 ALA 45 253 253 ALA ALA A . n A 1 46 PRO 46 254 254 PRO PRO A . n A 1 47 ILE 47 255 255 ILE ILE A . n A 1 48 VAL 48 256 256 VAL VAL A . n A 1 49 ASN 49 257 257 ASN ASN A . n A 1 50 ALA 50 258 258 ALA ALA A . n A 1 51 PRO 51 259 259 PRO PRO A . n A 1 52 GLU 52 260 260 GLU GLU A . n A 1 53 GLY 53 261 261 GLY GLY A . n A 1 54 GLY 54 262 262 GLY GLY A . n A 1 55 LYS 55 263 263 LYS LYS A . n A 1 56 VAL 56 264 264 VAL VAL A . n A 1 57 ASP 57 265 265 ASP ASP A . n A 1 58 LEU 58 266 266 LEU LEU A . n A 1 59 GLU 59 267 267 GLU GLU A . n A 1 60 ALA 60 268 268 ALA ALA A . n A 1 61 PHE 61 269 269 PHE PHE A . n A 1 62 SER 62 270 270 SER SER A . n A 1 63 HIS 63 271 271 HIS HIS A . n A 1 64 PHE 64 272 272 PHE PHE A . n A 1 65 THR 65 273 273 THR THR A . n A 1 66 LYS 66 274 274 LYS LYS A . n A 1 67 ILE 67 275 275 ILE ILE A . n A 1 68 ILE 68 276 276 ILE ILE A . n A 1 69 THR 69 277 277 THR THR A . n A 1 70 PRO 70 278 278 PRO PRO A . n A 1 71 ALA 71 279 279 ALA ALA A . n A 1 72 ILE 72 280 280 ILE ILE A . n A 1 73 THR 73 281 281 THR THR A . n A 1 74 ARG 74 282 282 ARG ARG A . n A 1 75 VAL 75 283 283 VAL VAL A . n A 1 76 VAL 76 284 284 VAL VAL A . n A 1 77 ASP 77 285 285 ASP ASP A . n A 1 78 PHE 78 286 286 PHE PHE A . n A 1 79 ALA 79 287 287 ALA ALA A . n A 1 80 LYS 80 288 288 LYS LYS A . n A 1 81 LYS 81 289 289 LYS LYS A . n A 1 82 LEU 82 290 290 LEU LEU A . n A 1 83 PRO 83 291 291 PRO PRO A . n A 1 84 MET 84 292 292 MET MET A . n A 1 85 PHE 85 293 293 PHE PHE A . n A 1 86 CYS 86 294 294 CYS CYS A . n A 1 87 GLU 87 295 295 GLU GLU A . n A 1 88 LEU 88 296 296 LEU LEU A . n A 1 89 PRO 89 297 297 PRO PRO A . n A 1 90 CYS 90 298 298 CYS CYS A . n A 1 91 GLU 91 299 299 GLU GLU A . n A 1 92 ASP 92 300 300 ASP ASP A . n A 1 93 GLN 93 301 301 GLN GLN A . n A 1 94 ILE 94 302 302 ILE ILE A . n A 1 95 ILE 95 303 303 ILE ILE A . n A 1 96 LEU 96 304 304 LEU LEU A . n A 1 97 LEU 97 305 305 LEU LEU A . n A 1 98 LYS 98 306 306 LYS LYS A . n A 1 99 GLY 99 307 307 GLY GLY A . n A 1 100 CYS 100 308 308 CYS CYS A . n A 1 101 CYS 101 309 309 CYS CYS A . n A 1 102 MET 102 310 310 MET MET A . n A 1 103 GLU 103 311 311 GLU GLU A . n A 1 104 ILE 104 312 312 ILE ILE A . n A 1 105 MET 105 313 313 MET MET A . n A 1 106 SER 106 314 314 SER SER A . n A 1 107 LEU 107 315 315 LEU LEU A . n A 1 108 ARG 108 316 316 ARG ARG A . n A 1 109 ALA 109 317 317 ALA ALA A . n A 1 110 ALA 110 318 318 ALA ALA A . n A 1 111 VAL 111 319 319 VAL VAL A . n A 1 112 ARG 112 320 320 ARG ARG A . n A 1 113 TYR 113 321 321 TYR TYR A . n A 1 114 ASP 114 322 322 ASP ASP A . n A 1 115 PRO 115 323 323 PRO PRO A . n A 1 116 GLU 116 324 324 GLU GLU A . n A 1 117 SER 117 325 325 SER SER A . n A 1 118 GLU 118 326 326 GLU GLU A . n A 1 119 THR 119 327 327 THR THR A . n A 1 120 LEU 120 328 328 LEU LEU A . n A 1 121 THR 121 329 329 THR THR A . n A 1 122 LEU 122 330 330 LEU LEU A . n A 1 123 SER 123 331 331 SER SER A . n A 1 124 GLY 124 332 332 GLY GLY A . n A 1 125 GLU 125 333 333 GLU GLU A . n A 1 126 MET 126 334 334 MET MET A . n A 1 127 ALA 127 335 335 ALA ALA A . n A 1 128 VAL 128 336 336 VAL VAL A . n A 1 129 THR 129 337 337 THR THR A . n A 1 130 ARG 130 338 338 ARG ARG A . n A 1 131 GLY 131 339 339 GLY GLY A . n A 1 132 GLN 132 340 340 GLN GLN A . n A 1 133 LEU 133 341 341 LEU LEU A . n A 1 134 LYS 134 342 342 LYS LYS A . n A 1 135 ASN 135 343 343 ASN ASN A . n A 1 136 GLY 136 344 344 GLY GLY A . n A 1 137 GLY 137 345 345 GLY GLY A . n A 1 138 LEU 138 346 346 LEU LEU A . n A 1 139 GLY 139 347 347 GLY GLY A . n A 1 140 VAL 140 348 348 VAL VAL A . n A 1 141 VAL 141 349 349 VAL VAL A . n A 1 142 SER 142 350 350 SER SER A . n A 1 143 ASP 143 351 351 ASP ASP A . n A 1 144 ALA 144 352 352 ALA ALA A . n A 1 145 ILE 145 353 353 ILE ILE A . n A 1 146 PHE 146 354 354 PHE PHE A . n A 1 147 ASP 147 355 355 ASP ASP A . n A 1 148 LEU 148 356 356 LEU LEU A . n A 1 149 GLY 149 357 357 GLY GLY A . n A 1 150 MET 150 358 358 MET MET A . n A 1 151 SER 151 359 359 SER SER A . n A 1 152 LEU 152 360 360 LEU LEU A . n A 1 153 SER 153 361 361 SER SER A . n A 1 154 SER 154 362 362 SER SER A . n A 1 155 PHE 155 363 363 PHE PHE A . n A 1 156 ASN 156 364 364 ASN ASN A . n A 1 157 LEU 157 365 365 LEU LEU A . n A 1 158 ASP 158 366 366 ASP ASP A . n A 1 159 ASP 159 367 367 ASP ASP A . n A 1 160 THR 160 368 368 THR THR A . n A 1 161 GLU 161 369 369 GLU GLU A . n A 1 162 VAL 162 370 370 VAL VAL A . n A 1 163 ALA 163 371 371 ALA ALA A . n A 1 164 LEU 164 372 372 LEU LEU A . n A 1 165 LEU 165 373 373 LEU LEU A . n A 1 166 GLN 166 374 374 GLN GLN A . n A 1 167 ALA 167 375 375 ALA ALA A . n A 1 168 VAL 168 376 376 VAL VAL A . n A 1 169 LEU 169 377 377 LEU LEU A . n A 1 170 LEU 170 378 378 LEU LEU A . n A 1 171 MET 171 379 379 MET MET A . n A 1 172 SER 172 380 380 SER SER A . n A 1 173 SER 173 381 381 SER SER A . n A 1 174 ASP 174 382 382 ASP ASP A . n A 1 175 ARG 175 383 383 ARG ARG A . n A 1 176 PRO 176 384 384 PRO PRO A . n A 1 177 GLY 177 385 385 GLY GLY A . n A 1 178 LEU 178 386 386 LEU LEU A . n A 1 179 ALA 179 387 387 ALA ALA A . n A 1 180 CYS 180 388 388 CYS CYS A . n A 1 181 VAL 181 389 389 VAL VAL A . n A 1 182 GLU 182 390 390 GLU GLU A . n A 1 183 ARG 183 391 391 ARG ARG A . n A 1 184 ILE 184 392 392 ILE ILE A . n A 1 185 GLU 185 393 393 GLU GLU A . n A 1 186 LYS 186 394 394 LYS LYS A . n A 1 187 TYR 187 395 395 TYR TYR A . n A 1 188 GLN 188 396 396 GLN GLN A . n A 1 189 ASP 189 397 397 ASP ASP A . n A 1 190 SER 190 398 398 SER SER A . n A 1 191 PHE 191 399 399 PHE PHE A . n A 1 192 LEU 192 400 400 LEU LEU A . n A 1 193 LEU 193 401 401 LEU LEU A . n A 1 194 ALA 194 402 402 ALA ALA A . n A 1 195 PHE 195 403 403 PHE PHE A . n A 1 196 GLU 196 404 404 GLU GLU A . n A 1 197 HIS 197 405 405 HIS HIS A . n A 1 198 TYR 198 406 406 TYR TYR A . n A 1 199 ILE 199 407 407 ILE ILE A . n A 1 200 ASN 200 408 408 ASN ASN A . n A 1 201 TYR 201 409 409 TYR TYR A . n A 1 202 ARG 202 410 410 ARG ARG A . n A 1 203 LYS 203 411 411 LYS LYS A . n A 1 204 HIS 204 412 412 HIS HIS A . n A 1 205 HIS 205 413 413 HIS HIS A . n A 1 206 VAL 206 414 414 VAL VAL A . n A 1 207 THR 207 415 415 THR THR A . n A 1 208 HIS 208 416 416 HIS HIS A . n A 1 209 PHE 209 417 417 PHE PHE A . n A 1 210 TRP 210 418 418 TRP TRP A . n A 1 211 PRO 211 419 419 PRO PRO A . n A 1 212 LYS 212 420 420 LYS LYS A . n A 1 213 LEU 213 421 421 LEU LEU A . n A 1 214 LEU 214 422 422 LEU LEU A . n A 1 215 MET 215 423 423 MET MET A . n A 1 216 LYS 216 424 424 LYS LYS A . n A 1 217 VAL 217 425 425 VAL VAL A . n A 1 218 THR 218 426 426 THR THR A . n A 1 219 ASP 219 427 427 ASP ASP A . n A 1 220 LEU 220 428 428 LEU LEU A . n A 1 221 ARG 221 429 429 ARG ARG A . n A 1 222 MET 222 430 430 MET MET A . n A 1 223 ILE 223 431 431 ILE ILE A . n A 1 224 GLY 224 432 432 GLY GLY A . n A 1 225 ALA 225 433 433 ALA ALA A . n A 1 226 CYS 226 434 434 CYS CYS A . n A 1 227 HIS 227 435 435 HIS HIS A . n A 1 228 ALA 228 436 436 ALA ALA A . n A 1 229 SER 229 437 437 SER SER A . n A 1 230 ARG 230 438 438 ARG ARG A . n A 1 231 PHE 231 439 439 PHE PHE A . n A 1 232 LEU 232 440 440 LEU LEU A . n A 1 233 HIS 233 441 441 HIS HIS A . n A 1 234 MET 234 442 442 MET MET A . n A 1 235 LYS 235 443 443 LYS LYS A . n A 1 236 VAL 236 444 444 VAL VAL A . n A 1 237 GLU 237 445 445 GLU GLU A . n A 1 238 CYS 238 446 446 CYS CYS A . n A 1 239 PRO 239 447 447 PRO PRO A . n A 1 240 THR 240 448 448 THR THR A . n A 1 241 GLU 241 449 449 GLU GLU A . n A 1 242 LEU 242 450 450 LEU LEU A . n A 1 243 PHE 243 451 451 PHE PHE A . n A 1 244 PRO 244 452 452 PRO PRO A . n A 1 245 PRO 245 453 453 PRO PRO A . n A 1 246 LEU 246 454 454 LEU LEU A . n A 1 247 PHE 247 455 455 PHE PHE A . n A 1 248 LEU 248 456 456 LEU LEU A . n A 1 249 GLU 249 457 457 GLU GLU A . n A 1 250 VAL 250 458 458 VAL VAL A . n A 1 251 PHE 251 459 459 PHE PHE A . n A 1 252 GLU 252 460 460 GLU GLU A . n A 1 253 ASP 253 461 461 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OEF 1 1461 1461 OEF OEF A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2099 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-25 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # _software.name CNS _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 2J4A _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, ASN 331 TO SER' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 238 ? ? -37.65 126.75 2 1 CYS A 388 ? ? -90.30 57.63 3 1 VAL A 414 ? ? -172.91 131.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 299 ? CG ? A GLU 91 CG 2 1 Y 1 A GLU 299 ? CD ? A GLU 91 CD 3 1 Y 1 A GLU 299 ? OE1 ? A GLU 91 OE1 4 1 Y 1 A GLU 299 ? OE2 ? A GLU 91 OE2 5 1 Y 1 A GLU 333 ? CG ? A GLU 125 CG 6 1 Y 1 A GLU 333 ? CD ? A GLU 125 CD 7 1 Y 1 A GLU 333 ? OE1 ? A GLU 125 OE1 8 1 Y 1 A GLU 333 ? OE2 ? A GLU 125 OE2 9 1 Y 1 A LYS 394 ? CG ? A LYS 186 CG 10 1 Y 1 A LYS 394 ? CD ? A LYS 186 CD 11 1 Y 1 A LYS 394 ? CE ? A LYS 186 CE 12 1 Y 1 A LYS 394 ? NZ ? A LYS 186 NZ 13 1 Y 1 A THR 448 ? OG1 ? A THR 240 OG1 14 1 Y 1 A THR 448 ? CG2 ? A THR 240 CG2 15 1 Y 1 A ASP 461 ? CA ? A ASP 253 CA 16 1 Y 1 A ASP 461 ? C ? A ASP 253 C 17 1 Y 1 A ASP 461 ? O ? A ASP 253 O 18 1 Y 1 A ASP 461 ? CB ? A ASP 253 CB 19 1 Y 1 A ASP 461 ? CG ? A ASP 253 CG 20 1 Y 1 A ASP 461 ? OD1 ? A ASP 253 OD1 21 1 Y 1 A ASP 461 ? OD2 ? A ASP 253 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 209 ? A GLY 1 2 1 Y 1 A HIS 210 ? A HIS 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3,5-DIBROMO-4-(3-ISOPROPYL-PHENOXY)BENZOIC ACID' OEF 3 water HOH #