HEADER TRANSCRIPTION 28-AUG-06 2J4B TITLE CRYSTAL STRUCTURE OF ENCEPHALITOZOON CUNICULI TAF5 N- TITLE 2 TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 72/90-100 COMPND 3 KDA; COMPND 4 CHAIN: A, B, C, D, E; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 16-149; COMPND 6 SYNONYM: TAF5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 6035; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TAF5, TFIID, WD REPEAT, INITIATION, TRANSCRIPTION, INITIATION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR C.ROMIER,N.JAMES,C.BIRCK,J.CAVARELLI,C.VIVARES,M.A.COLLART, D.MORAS REVDAT 4 13-JUL-11 2J4B 1 VERSN REVDAT 3 24-FEB-09 2J4B 1 VERSN REVDAT 2 08-MAY-07 2J4B 1 JRNL REVDAT 1 10-APR-07 2J4B 0 JRNL AUTH C.ROMIER,N.JAMES,C.BIRCK,J.CAVARELLI,C.VIVARES,M.A.COLLART, JRNL AUTH 2 D.MORAS JRNL TITL CRYSTAL STRUCTURE, BIOCHEMICAL AND GENETIC CHARACTERIZATION JRNL TITL 2 OF YEAST AND E. CUNICULI TAF(II)5 N-TERMINAL DOMAIN: JRNL TITL 3 IMPLICATIONS FOR TFIID ASSEMBLY. JRNL REF J.MOL.BIOL. V. 368 1292 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17397863 JRNL DOI 10.1016/J.JMB.2007.02.039 REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.368 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.352 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5807 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3915 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7838 ; 1.046 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9537 ; 0.719 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 4.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;34.458 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1059 ;15.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;11.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 832 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6332 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1250 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1458 ; 0.223 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3948 ; 0.195 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2872 ; 0.201 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2760 ; 0.091 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 395 ; 0.284 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.231 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.257 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.247 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4354 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5311 ; 1.214 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3050 ; 0.663 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2527 ; 0.953 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9470 49.0820 149.7390 REMARK 3 T TENSOR REMARK 3 T11: -0.1890 T22: -0.0806 REMARK 3 T33: -0.2448 T12: 0.0128 REMARK 3 T13: 0.0017 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.7763 L22: 3.4097 REMARK 3 L33: 2.1989 L12: -1.5392 REMARK 3 L13: -1.4674 L23: 1.4296 REMARK 3 S TENSOR REMARK 3 S11: -0.2244 S12: -0.4205 S13: 0.1014 REMARK 3 S21: 0.1343 S22: 0.1650 S23: -0.0318 REMARK 3 S31: 0.2070 S32: 0.1426 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6480 12.4980 129.3900 REMARK 3 T TENSOR REMARK 3 T11: -0.1906 T22: -0.1981 REMARK 3 T33: -0.1824 T12: 0.0350 REMARK 3 T13: -0.0518 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6754 L22: 5.1444 REMARK 3 L33: 3.3372 L12: 1.5200 REMARK 3 L13: -1.1299 L23: -2.2957 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.0887 S13: -0.0800 REMARK 3 S21: 0.1541 S22: 0.0851 S23: -0.1368 REMARK 3 S31: -0.0729 S32: -0.0128 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 16 C 148 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5590 59.6150 126.9510 REMARK 3 T TENSOR REMARK 3 T11: -0.1601 T22: -0.1135 REMARK 3 T33: -0.2028 T12: 0.0762 REMARK 3 T13: -0.0143 T23: -0.2007 REMARK 3 L TENSOR REMARK 3 L11: 8.0759 L22: 2.6334 REMARK 3 L33: 1.6744 L12: -2.9156 REMARK 3 L13: -2.7031 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.3650 S12: 0.7038 S13: -0.1370 REMARK 3 S21: -0.3910 S22: -0.5452 S23: 0.1315 REMARK 3 S31: 0.0139 S32: -0.2310 S33: 0.1802 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 18 D 148 REMARK 3 ORIGIN FOR THE GROUP (A): 56.1760 10.8170 137.5670 REMARK 3 T TENSOR REMARK 3 T11: -0.1681 T22: -0.1663 REMARK 3 T33: -0.2040 T12: 0.0223 REMARK 3 T13: -0.0564 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.7420 L22: 4.3594 REMARK 3 L33: 1.9202 L12: -1.1839 REMARK 3 L13: -0.3148 L23: 1.8758 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.1539 S13: 0.2106 REMARK 3 S21: -0.3623 S22: -0.1949 S23: 0.0290 REMARK 3 S31: -0.1256 S32: -0.0791 S33: 0.2056 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 18 E 147 REMARK 3 ORIGIN FOR THE GROUP (A): 64.8010 60.8440 139.6890 REMARK 3 T TENSOR REMARK 3 T11: -0.1899 T22: -0.1909 REMARK 3 T33: -0.2191 T12: 0.0227 REMARK 3 T13: -0.0351 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 5.3774 L22: 1.8008 REMARK 3 L33: 3.5683 L12: 0.4398 REMARK 3 L13: -2.2865 L23: -0.8055 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.0346 S13: -0.0500 REMARK 3 S21: -0.0387 S22: -0.1930 S23: 0.0354 REMARK 3 S31: 0.0497 S32: 0.0024 S33: 0.1480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2J4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS/HCL PH 8.0 0.2 M REMARK 280 MGCL2 2.0 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 198.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.50000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 247.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.50000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 198.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 247.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 148.50000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 MET A 15 REMARK 465 LYS A 16 REMARK 465 ASP A 17 REMARK 465 TYR A 77 REMARK 465 ASN A 78 REMARK 465 PRO A 149 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 HIS B 14 REMARK 465 MET B 15 REMARK 465 LYS B 16 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 465 HIS C 14 REMARK 465 MET C 15 REMARK 465 PRO C 149 REMARK 465 GLY D 12 REMARK 465 SER D 13 REMARK 465 HIS D 14 REMARK 465 MET D 15 REMARK 465 LYS D 16 REMARK 465 ASP D 17 REMARK 465 PRO D 149 REMARK 465 GLY E 12 REMARK 465 SER E 13 REMARK 465 HIS E 14 REMARK 465 MET E 15 REMARK 465 LYS E 16 REMARK 465 ASP E 17 REMARK 465 GLY E 148 REMARK 465 PRO E 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 23 O HOH A 2002 2.15 REMARK 500 NZ LYS A 71 O HOH A 2032 2.18 REMARK 500 O ASN A 106 O HOH A 2040 1.88 REMARK 500 OE2 GLU B 31 O HOH B 2010 1.96 REMARK 500 OH TYR C 23 O HOH C 2002 1.95 REMARK 500 OE1 GLN C 58 O HOH C 2014 2.18 REMARK 500 OE1 GLN C 58 O HOH C 2015 2.17 REMARK 500 O GLN C 59 O HOH C 2016 2.10 REMARK 500 O LYS C 66 O HOH C 2023 2.03 REMARK 500 O GLY C 74 O HOH C 2025 2.04 REMARK 500 OD1 ASP C 142 O HOH C 2050 2.10 REMARK 500 OD2 ASP C 142 O HOH C 2051 2.14 REMARK 500 NZ LYS C 144 O HOH C 2054 2.12 REMARK 500 OE2 GLU E 67 O HOH E 2016 2.16 REMARK 500 O HOH E 2006 O HOH E 2011 2.10 REMARK 500 O HOH E 2011 O HOH E 2029 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 115 OE1 GLU B 126 10665 2.14 REMARK 500 O HOH C 2029 O HOH B 2043 10665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 65.49 -110.55 REMARK 500 HIS B 76 53.41 -102.75 REMARK 500 ASN B 106 -80.21 -85.92 REMARK 500 ASP C 32 55.25 -98.80 REMARK 500 ASN C 78 13.20 55.05 REMARK 500 SER C 80 45.34 -84.27 REMARK 500 GLU C 81 -50.31 -144.90 REMARK 500 LYS E 61 70.24 -110.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J49 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST TAF5 N-TERMINAL REMARK 900 DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 4 RESIDUES IN EACH CHAIN REPRESENT THE THROMBIN REMARK 999 CUTTING SITE (GS) AND THE NDEL CLONING SITE (HM) AND ARE REMARK 999 NOT PART OF THE FULL PROTEIN. THESE RESIDUES ARE MAPPED REMARK 999 TO THE PDB ENTRY. DBREF 2J4B A 12 15 PDB 2J4B 2J4B 12 15 DBREF 2J4B A 16 149 UNP Q8SQS4 Q8SQS4_ENCCU 16 149 DBREF 2J4B B 12 15 PDB 2J4B 2J4B 12 15 DBREF 2J4B B 16 149 UNP Q8SQS4 Q8SQS4_ENCCU 16 149 DBREF 2J4B C 12 15 PDB 2J4B 2J4B 12 15 DBREF 2J4B C 16 149 UNP Q8SQS4 Q8SQS4_ENCCU 16 149 DBREF 2J4B D 12 15 PDB 2J4B 2J4B 12 15 DBREF 2J4B D 16 149 UNP Q8SQS4 Q8SQS4_ENCCU 16 149 DBREF 2J4B E 12 15 PDB 2J4B 2J4B 12 15 DBREF 2J4B E 16 149 UNP Q8SQS4 Q8SQS4_ENCCU 16 149 SEQRES 1 A 138 GLY SER HIS MET LYS ASP GLN MET GLU THR SER TYR VAL SEQRES 2 A 138 SER LEU LYS THR TRP ILE GLU ASP SER LEU ASP LEU PHE SEQRES 3 A 138 LYS ASN ASP LEU LEU PRO LEU LEU TYR PRO LEU PHE ILE SEQRES 4 A 138 HIS ILE TYR PHE ASP LEU ILE GLN GLN ASN LYS THR ASP SEQRES 5 A 138 GLU ALA LYS GLU PHE PHE GLU LYS TYR ARG GLY ASP HIS SEQRES 6 A 138 TYR ASN LYS SER GLU GLU ILE LYS GLN PHE GLU SER ILE SEQRES 7 A 138 TYR THR VAL GLN HIS ILE HIS GLU ASN ASN PHE ALA TYR SEQRES 8 A 138 THR PHE LYS ASN SER LYS TYR HIS LEU SER MET GLY ARG SEQRES 9 A 138 TYR ALA PHE ASP LEU LEU ILE ASN PHE LEU GLU GLU ARG SEQRES 10 A 138 ASN LEU THR TYR ILE LEU LYS ILE LEU ASN GLN HIS LEU SEQRES 11 A 138 ASP ILE LYS VAL TYR VAL GLY PRO SEQRES 1 B 138 GLY SER HIS MET LYS ASP GLN MET GLU THR SER TYR VAL SEQRES 2 B 138 SER LEU LYS THR TRP ILE GLU ASP SER LEU ASP LEU PHE SEQRES 3 B 138 LYS ASN ASP LEU LEU PRO LEU LEU TYR PRO LEU PHE ILE SEQRES 4 B 138 HIS ILE TYR PHE ASP LEU ILE GLN GLN ASN LYS THR ASP SEQRES 5 B 138 GLU ALA LYS GLU PHE PHE GLU LYS TYR ARG GLY ASP HIS SEQRES 6 B 138 TYR ASN LYS SER GLU GLU ILE LYS GLN PHE GLU SER ILE SEQRES 7 B 138 TYR THR VAL GLN HIS ILE HIS GLU ASN ASN PHE ALA TYR SEQRES 8 B 138 THR PHE LYS ASN SER LYS TYR HIS LEU SER MET GLY ARG SEQRES 9 B 138 TYR ALA PHE ASP LEU LEU ILE ASN PHE LEU GLU GLU ARG SEQRES 10 B 138 ASN LEU THR TYR ILE LEU LYS ILE LEU ASN GLN HIS LEU SEQRES 11 B 138 ASP ILE LYS VAL TYR VAL GLY PRO SEQRES 1 C 138 GLY SER HIS MET LYS ASP GLN MET GLU THR SER TYR VAL SEQRES 2 C 138 SER LEU LYS THR TRP ILE GLU ASP SER LEU ASP LEU PHE SEQRES 3 C 138 LYS ASN ASP LEU LEU PRO LEU LEU TYR PRO LEU PHE ILE SEQRES 4 C 138 HIS ILE TYR PHE ASP LEU ILE GLN GLN ASN LYS THR ASP SEQRES 5 C 138 GLU ALA LYS GLU PHE PHE GLU LYS TYR ARG GLY ASP HIS SEQRES 6 C 138 TYR ASN LYS SER GLU GLU ILE LYS GLN PHE GLU SER ILE SEQRES 7 C 138 TYR THR VAL GLN HIS ILE HIS GLU ASN ASN PHE ALA TYR SEQRES 8 C 138 THR PHE LYS ASN SER LYS TYR HIS LEU SER MET GLY ARG SEQRES 9 C 138 TYR ALA PHE ASP LEU LEU ILE ASN PHE LEU GLU GLU ARG SEQRES 10 C 138 ASN LEU THR TYR ILE LEU LYS ILE LEU ASN GLN HIS LEU SEQRES 11 C 138 ASP ILE LYS VAL TYR VAL GLY PRO SEQRES 1 D 138 GLY SER HIS MET LYS ASP GLN MET GLU THR SER TYR VAL SEQRES 2 D 138 SER LEU LYS THR TRP ILE GLU ASP SER LEU ASP LEU PHE SEQRES 3 D 138 LYS ASN ASP LEU LEU PRO LEU LEU TYR PRO LEU PHE ILE SEQRES 4 D 138 HIS ILE TYR PHE ASP LEU ILE GLN GLN ASN LYS THR ASP SEQRES 5 D 138 GLU ALA LYS GLU PHE PHE GLU LYS TYR ARG GLY ASP HIS SEQRES 6 D 138 TYR ASN LYS SER GLU GLU ILE LYS GLN PHE GLU SER ILE SEQRES 7 D 138 TYR THR VAL GLN HIS ILE HIS GLU ASN ASN PHE ALA TYR SEQRES 8 D 138 THR PHE LYS ASN SER LYS TYR HIS LEU SER MET GLY ARG SEQRES 9 D 138 TYR ALA PHE ASP LEU LEU ILE ASN PHE LEU GLU GLU ARG SEQRES 10 D 138 ASN LEU THR TYR ILE LEU LYS ILE LEU ASN GLN HIS LEU SEQRES 11 D 138 ASP ILE LYS VAL TYR VAL GLY PRO SEQRES 1 E 138 GLY SER HIS MET LYS ASP GLN MET GLU THR SER TYR VAL SEQRES 2 E 138 SER LEU LYS THR TRP ILE GLU ASP SER LEU ASP LEU PHE SEQRES 3 E 138 LYS ASN ASP LEU LEU PRO LEU LEU TYR PRO LEU PHE ILE SEQRES 4 E 138 HIS ILE TYR PHE ASP LEU ILE GLN GLN ASN LYS THR ASP SEQRES 5 E 138 GLU ALA LYS GLU PHE PHE GLU LYS TYR ARG GLY ASP HIS SEQRES 6 E 138 TYR ASN LYS SER GLU GLU ILE LYS GLN PHE GLU SER ILE SEQRES 7 E 138 TYR THR VAL GLN HIS ILE HIS GLU ASN ASN PHE ALA TYR SEQRES 8 E 138 THR PHE LYS ASN SER LYS TYR HIS LEU SER MET GLY ARG SEQRES 9 E 138 TYR ALA PHE ASP LEU LEU ILE ASN PHE LEU GLU GLU ARG SEQRES 10 E 138 ASN LEU THR TYR ILE LEU LYS ILE LEU ASN GLN HIS LEU SEQRES 11 E 138 ASP ILE LYS VAL TYR VAL GLY PRO FORMUL 6 HOH *295(H2 O) HELIX 1 1 GLN A 18 SER A 33 1 16 HELIX 2 2 LEU A 34 LEU A 42 1 9 HELIX 3 3 LEU A 44 GLN A 59 1 16 HELIX 4 4 LYS A 61 ARG A 73 1 13 HELIX 5 5 GLY A 74 HIS A 76 5 3 HELIX 6 6 LYS A 79 GLU A 87 1 9 HELIX 7 7 THR A 91 ASN A 98 1 8 HELIX 8 8 ASN A 98 SER A 107 1 10 HELIX 9 9 ARG A 115 ARG A 128 1 14 HELIX 10 10 LEU A 130 HIS A 140 1 11 HELIX 11 11 ASP B 17 ASP B 32 1 16 HELIX 12 12 LEU B 34 GLN B 59 1 26 HELIX 13 13 LYS B 61 ARG B 73 1 13 HELIX 14 14 GLY B 74 TYR B 77 5 4 HELIX 15 15 LYS B 79 GLU B 87 1 9 HELIX 16 16 THR B 91 ASN B 98 1 8 HELIX 17 17 ASN B 98 SER B 107 1 10 HELIX 18 18 ARG B 115 ARG B 128 1 14 HELIX 19 19 LEU B 130 HIS B 140 1 11 HELIX 20 20 LYS C 16 ASP C 32 1 17 HELIX 21 21 LEU C 34 LEU C 42 1 9 HELIX 22 22 LEU C 44 GLN C 59 1 16 HELIX 23 23 LYS C 61 ARG C 73 1 13 HELIX 24 24 GLY C 74 HIS C 76 5 3 HELIX 25 25 GLU C 82 GLU C 87 1 6 HELIX 26 26 THR C 91 ASN C 98 1 8 HELIX 27 27 ASN C 98 ASN C 106 1 9 HELIX 28 28 ARG C 115 ARG C 128 1 14 HELIX 29 29 LEU C 130 HIS C 140 1 11 HELIX 30 30 GLN D 18 SER D 33 1 16 HELIX 31 31 LEU D 34 LEU D 36 5 3 HELIX 32 32 PHE D 37 LEU D 42 1 6 HELIX 33 33 LEU D 44 GLN D 59 1 16 HELIX 34 34 LYS D 61 ARG D 73 1 13 HELIX 35 35 GLY D 74 ASN D 78 5 5 HELIX 36 36 LYS D 79 GLU D 87 1 9 HELIX 37 37 THR D 91 ASN D 98 1 8 HELIX 38 38 ASN D 98 SER D 107 1 10 HELIX 39 39 ARG D 115 ARG D 128 1 14 HELIX 40 40 LEU D 130 HIS D 140 1 11 HELIX 41 41 GLN E 18 ASP E 32 1 15 HELIX 42 42 LEU E 34 LEU E 42 1 9 HELIX 43 43 LEU E 44 GLN E 59 1 16 HELIX 44 44 LYS E 61 ARG E 73 1 13 HELIX 45 45 GLY E 74 ASN E 78 5 5 HELIX 46 46 LYS E 79 GLU E 87 1 9 HELIX 47 47 THR E 91 ASN E 98 1 8 HELIX 48 48 ASN E 98 SER E 107 1 10 HELIX 49 49 ARG E 115 ARG E 128 1 14 HELIX 50 50 LEU E 130 HIS E 140 1 11 SHEET 1 AA 2 TYR A 109 GLY A 114 0 SHEET 2 AA 2 LEU A 141 TYR A 146 1 O ASP A 142 N LEU A 111 SHEET 1 BA 2 TYR B 109 GLY B 114 0 SHEET 2 BA 2 LEU B 141 TYR B 146 1 O ASP B 142 N LEU B 111 SHEET 1 CA 2 TYR C 109 GLY C 114 0 SHEET 2 CA 2 LEU C 141 TYR C 146 1 O ASP C 142 N LEU C 111 SHEET 1 DA 2 TYR D 109 GLY D 114 0 SHEET 2 DA 2 LEU D 141 TYR D 146 1 O ASP D 142 N LEU D 111 SHEET 1 EA 2 TYR E 109 GLY E 114 0 SHEET 2 EA 2 LEU E 141 TYR E 146 1 O ASP E 142 N LEU E 111 CISPEP 1 GLY B 148 PRO B 149 0 -8.74 CRYST1 91.520 91.520 297.000 90.00 90.00 120.00 P 61 2 2 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010927 0.006308 0.000000 0.00000 SCALE2 0.000000 0.012617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003367 0.00000