HEADER TRANSFERASE 01-SEP-06 2J4K TITLE CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM SULFOLOBUS SOLFATARICUS IN TITLE 2 COMPLEX WITH UMP TO 2.2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 2-227; COMPND 5 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE; COMPND 6 EC: 2.7.4.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTOKINASE FAMILY, PYRIMIDINE BIOSYNTHESIS, KINASE, UMP KINASE, KEYWDS 2 TRANSFERASE, NUCLEOSIDE MONOPHOSPHATE KINASE, PYRIMIDINE NUCLEOTIDE KEYWDS 3 SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR K.S.JENSEN,E.JOHANSSON,K.F.JENSEN REVDAT 6 01-MAY-24 2J4K 1 REMARK LINK REVDAT 5 08-MAY-19 2J4K 1 REMARK REVDAT 4 17-JAN-18 2J4K 1 REMARK REVDAT 3 24-FEB-09 2J4K 1 VERSN REVDAT 2 13-MAR-07 2J4K 1 COMPND JRNL REVDAT 1 27-FEB-07 2J4K 0 JRNL AUTH K.S.JENSEN,E.JOHANSSON,K.F.JENSEN JRNL TITL STRUCTURAL AND ENZYMATIC INVESTIGATION OF THE SULFOLOBUS JRNL TITL 2 SOLFATARICUS URIDYLATE KINASE SHOWS COMPETITIVE UTP JRNL TITL 3 INHIBITION AND THE LACK OF GTP STIMULATION JRNL REF BIOCHEMISTRY V. 46 2745 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17297917 JRNL DOI 10.1021/BI0618159 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2035549.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 71829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3363 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11113 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 592 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 50.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : LIG.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : LIG.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SINGLE ASYMMETRICALLY CUT REMARK 200 SI(111) CRYSTAL WITH HORIZONTAL REMARK 200 DIFFRACTION PLANE REMARK 200 OPTICS : VERTICALLY FOCUSING CYLINDRICAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72006 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 22.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: URIDYLATE KINASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 200 COMPLEX WITH UMP AND AMPPCP - HEXAMER - WITHOUT LIGANDS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (2UL) IN 10 MM REMARK 280 TRIS/CL PH 7.6 WITH 4.6 MG/ML SSUMPK AND 2 MM UMP AND 5 MM MGCL2 REMARK 280 MIXED WITH 2 UL MOTHER SOLUTION. MOTHER SOLUTION: 0.65 M SODIUM REMARK 280 ACETATE, 100 MM CDCL2, 0.1 M HEPES, PH 7.5. HANGING DROP VAPOR REMARK 280 DIFFUSION TECHNIQUE, PH 7.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.02150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 GLN A 174 REMARK 465 SER A 175 REMARK 465 VAL A 176 REMARK 465 GLN A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 THR A 180 REMARK 465 TYR A 181 REMARK 465 GLU A 182 REMARK 465 ILE A 211 REMARK 465 ASP A 212 REMARK 465 ILE A 213 REMARK 465 LEU A 214 REMARK 465 LYS A 215 REMARK 465 GLY A 216 REMARK 465 GLU A 217 REMARK 465 LEU B 170 REMARK 465 GLU B 171 REMARK 465 GLY B 172 REMARK 465 SER B 173 REMARK 465 GLN B 174 REMARK 465 SER B 175 REMARK 465 VAL B 176 REMARK 465 GLN B 177 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 THR B 180 REMARK 465 TYR B 181 REMARK 465 ALA C 153 REMARK 465 ASP C 154 REMARK 465 VAL C 155 REMARK 465 LYS C 156 REMARK 465 LEU C 157 REMARK 465 LYS C 168 REMARK 465 ILE C 169 REMARK 465 LEU C 170 REMARK 465 GLU C 171 REMARK 465 GLY C 172 REMARK 465 SER C 173 REMARK 465 GLN C 174 REMARK 465 SER C 175 REMARK 465 VAL C 176 REMARK 465 GLN C 177 REMARK 465 ALA C 178 REMARK 465 GLY C 179 REMARK 465 THR C 180 REMARK 465 TYR C 181 REMARK 465 GLU C 182 REMARK 465 VAL E 17 REMARK 465 ASP E 18 REMARK 465 ASN E 19 REMARK 465 LEU E 20 REMARK 465 ILE E 21 REMARK 465 GLU F 146 REMARK 465 LYS F 147 REMARK 465 ASP F 148 REMARK 465 PRO F 149 REMARK 465 ARG F 150 REMARK 465 ILE F 151 REMARK 465 TYR F 152 REMARK 465 ALA F 153 REMARK 465 ASP F 154 REMARK 465 VAL F 155 REMARK 465 LEU F 170 REMARK 465 GLU F 171 REMARK 465 GLY F 172 REMARK 465 SER F 173 REMARK 465 GLN F 174 REMARK 465 SER F 175 REMARK 465 VAL F 176 REMARK 465 GLN F 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -8.18 -58.57 REMARK 500 GLN A 84 138.38 -27.66 REMARK 500 ASP A 85 -32.51 83.24 REMARK 500 PHE A 113 -51.00 -122.04 REMARK 500 ALA A 153 -8.51 69.03 REMARK 500 ILE A 169 27.76 -69.52 REMARK 500 TYR A 204 24.93 -69.14 REMARK 500 ARG A 209 108.62 -43.69 REMARK 500 SER A 220 -175.29 -178.87 REMARK 500 ASP B 15 31.98 76.24 REMARK 500 ASN B 16 -78.85 -31.83 REMARK 500 ASP B 85 -21.58 88.07 REMARK 500 PHE B 113 -62.53 -121.58 REMARK 500 ILE B 151 -39.45 -136.43 REMARK 500 LEU B 183 -70.09 -132.87 REMARK 500 ASN B 208 1.63 -67.06 REMARK 500 ASP C 13 -75.16 -101.46 REMARK 500 ASN C 16 -80.02 -34.13 REMARK 500 ASN C 33 33.96 -91.53 REMARK 500 ASP C 85 -26.68 75.56 REMARK 500 ASN C 140 36.31 -88.68 REMARK 500 PRO C 149 4.91 -58.24 REMARK 500 GLU C 217 62.43 -104.45 REMARK 500 GLU C 218 155.61 175.08 REMARK 500 ASP D 15 -35.73 -38.69 REMARK 500 GLU D 29 -76.15 -50.78 REMARK 500 ASP D 85 -38.88 94.02 REMARK 500 PRO D 149 -90.41 -50.14 REMARK 500 ARG D 150 -29.63 -31.10 REMARK 500 ASP D 154 97.59 21.45 REMARK 500 GLU D 217 22.27 -78.59 REMARK 500 SER D 220 176.43 171.35 REMARK 500 ASP E 85 -34.10 87.64 REMARK 500 SER E 220 172.08 177.82 REMARK 500 GLN F 84 129.33 -26.77 REMARK 500 ASP F 85 -29.37 90.78 REMARK 500 HIS F 90 132.39 -170.18 REMARK 500 GLU F 182 -70.42 -57.28 REMARK 500 SER F 220 174.40 178.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 229 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 HOH A2020 O 71.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 NE2 REMARK 620 2 HIS C 104 NE2 97.7 REMARK 620 3 HIS F 104 NE2 100.8 90.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 231 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U5P A 227 O2P REMARK 620 2 U5P A 227 O3P 54.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 234 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD1 REMARK 620 2 ASP B 15 OD2 43.8 REMARK 620 3 ASP B 18 OD2 113.2 77.6 REMARK 620 4 HOH C2001 O 116.3 78.7 64.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 233 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD2 REMARK 620 2 ASP B 18 OD1 52.4 REMARK 620 3 HOH B2004 O 81.9 95.2 REMARK 620 4 HOH B2005 O 129.7 86.9 72.9 REMARK 620 5 ASP C 18 OD1 124.6 177.0 84.3 95.7 REMARK 620 6 ASP C 18 OD2 78.8 127.0 97.3 145.9 50.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 229 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 90 NE2 REMARK 620 2 HOH B2008 O 111.7 REMARK 620 3 HOH B2020 O 86.7 158.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 104 NE2 REMARK 620 2 HIS D 104 NE2 95.1 REMARK 620 3 HOH D2021 O 114.0 117.3 REMARK 620 4 TYR E 88 OH 167.5 80.3 78.2 REMARK 620 5 HIS E 104 NE2 96.3 96.9 130.2 72.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 230 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 160 NE2 REMARK 620 2 GLU F 29 OE1 83.8 REMARK 620 3 HOH F2003 O 112.7 93.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 232 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 224 OE2 REMARK 620 2 ASP F 212 OD1 87.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 231 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 15 OD2 REMARK 620 2 ASP C 15 OD1 46.0 REMARK 620 3 ASP C 18 OD2 131.9 86.0 REMARK 620 4 HOH C2001 O 156.1 135.9 59.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD D 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 90 NE2 REMARK 620 2 HOH D2007 O 105.6 REMARK 620 3 HOH D2024 O 69.8 156.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD E 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 90 NE2 REMARK 620 2 HOH E2020 O 85.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD E 229 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 160 NE2 REMARK 620 2 ASP F 165 OD1 84.5 REMARK 620 3 ASP F 165 OD2 122.9 44.7 REMARK 620 4 HOH F2037 O 96.5 80.3 57.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD F 229 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 165 OD1 REMARK 620 2 ASP E 165 OD2 49.7 REMARK 620 3 HOH E2036 O 91.4 85.8 REMARK 620 4 HIS F 160 NE2 92.1 138.6 114.4 REMARK 620 5 HOH F2035 O 108.0 101.4 159.4 72.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD F 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 90 NE2 REMARK 620 2 HOH F2002 O 99.4 REMARK 620 3 HOH F2017 O 75.8 175.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD D 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD E 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD E 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD F 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD F 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P C 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P D 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P E 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P F 227 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J4J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 IN COMPLEX WITH UMP AND AMPPCP TO 2.1 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2J4L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 IN COMPLEX WITH UTP TO 2.8 ANGSTROM RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CRYSTALLIZED ENZYME WAS PREPARED WITH ONLY ONE MET REMARK 999 RESIDUE IN THE N-TERMINAL, IN CONTRAST TO THE DATABASE REMARK 999 SEQUENCE. DBREF 2J4K A 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 DBREF 2J4K B 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 DBREF 2J4K C 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 DBREF 2J4K D 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 DBREF 2J4K E 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 DBREF 2J4K F 1 226 UNP Q97ZE2 PYRH_SULSO 2 227 SEQRES 1 A 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 A 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 A 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 A 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 A 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 A 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 A 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 A 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 A 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 A 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 A 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 A 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 A 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 A 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 A 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 A 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 A 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 A 226 ILE ILE GLU PRO VAL SEQRES 1 B 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 B 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 B 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 B 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 B 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 B 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 B 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 B 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 B 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 B 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 B 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 B 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 B 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 B 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 B 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 B 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 B 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 B 226 ILE ILE GLU PRO VAL SEQRES 1 C 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 C 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 C 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 C 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 C 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 C 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 C 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 C 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 C 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 C 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 C 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 C 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 C 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 C 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 C 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 C 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 C 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 C 226 ILE ILE GLU PRO VAL SEQRES 1 D 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 D 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 D 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 D 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 D 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 D 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 D 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 D 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 D 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 D 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 D 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 D 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 D 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 D 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 D 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 D 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 D 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 D 226 ILE ILE GLU PRO VAL SEQRES 1 E 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 E 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 E 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 E 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 E 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 E 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 E 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 E 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 E 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 E 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 E 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 E 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 E 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 E 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 E 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 E 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 E 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 E 226 ILE ILE GLU PRO VAL SEQRES 1 F 226 MET ASN ILE ILE LEU LYS ILE SER GLY LYS PHE PHE ASP SEQRES 2 F 226 GLU ASP ASN VAL ASP ASN LEU ILE VAL LEU ARG GLN SER SEQRES 3 F 226 ILE LYS GLU LEU ALA ASP ASN GLY PHE ARG VAL GLY ILE SEQRES 4 F 226 VAL THR GLY GLY GLY SER THR ALA ARG ARG TYR ILE LYS SEQRES 5 F 226 LEU ALA ARG GLU ILE GLY ILE GLY GLU ALA TYR LEU ASP SEQRES 6 F 226 LEU LEU GLY ILE TRP ALA SER ARG LEU ASN ALA TYR LEU SEQRES 7 F 226 VAL MET PHE SER LEU GLN ASP LEU ALA TYR MET HIS VAL SEQRES 8 F 226 PRO GLN SER LEU GLU GLU PHE ILE GLN ASP TRP SER HIS SEQRES 9 F 226 GLY LYS VAL VAL VAL THR GLY GLY PHE GLN PRO GLY GLN SEQRES 10 F 226 SER THR ALA ALA VAL ALA ALA LEU VAL ALA GLU ALA SER SEQRES 11 F 226 SER SER LYS THR LEU VAL VAL ALA THR ASN VAL ASP GLY SEQRES 12 F 226 VAL TYR GLU LYS ASP PRO ARG ILE TYR ALA ASP VAL LYS SEQRES 13 F 226 LEU ILE PRO HIS LEU THR THR GLN ASP LEU ARG LYS ILE SEQRES 14 F 226 LEU GLU GLY SER GLN SER VAL GLN ALA GLY THR TYR GLU SEQRES 15 F 226 LEU LEU ASP PRO LEU ALA ILE LYS ILE VAL GLU ARG SER SEQRES 16 F 226 LYS ILE ARG VAL ILE VAL MET ASN TYR ARG LYS LEU ASN SEQRES 17 F 226 ARG ILE ILE ASP ILE LEU LYS GLY GLU GLU VAL SER SER SEQRES 18 F 226 ILE ILE GLU PRO VAL HET U5P A 227 21 HET CD A 228 1 HET CD A 229 1 HET CD A 230 1 HET MG A 231 1 HET U5P B 227 21 HET CD B 228 1 HET CD B 229 1 HET CD B 230 1 HET CD B 231 1 HET CD B 232 1 HET CD B 233 1 HET CD B 234 1 HET U5P C 227 21 HET CD C 228 1 HET CD C 229 1 HET CD C 231 1 HET U5P D 227 21 HET CD D 228 1 HET U5P E 227 21 HET CD E 228 1 HET CD E 229 1 HET U5P F 227 21 HET CD F 228 1 HET CD F 229 1 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION FORMUL 7 U5P 6(C9 H13 N2 O9 P) FORMUL 8 CD 18(CD 2+) FORMUL 11 MG MG 2+ FORMUL 32 HOH *259(H2 O) HELIX 1 1 GLY A 9 GLU A 14 5 6 HELIX 2 2 ASP A 18 ASP A 32 1 15 HELIX 3 3 GLY A 43 ILE A 57 1 15 HELIX 4 4 GLY A 60 LEU A 83 1 24 HELIX 5 5 SER A 94 SER A 103 1 10 HELIX 6 6 SER A 118 SER A 130 1 13 HELIX 7 7 THR A 163 ILE A 169 1 7 HELIX 8 8 ASP A 185 SER A 195 1 11 HELIX 9 9 GLY B 9 ASP B 13 5 5 HELIX 10 10 ASP B 15 ASN B 33 1 19 HELIX 11 11 GLY B 43 GLU B 56 1 14 HELIX 12 12 GLY B 60 LEU B 83 1 24 HELIX 13 13 SER B 94 SER B 103 1 10 HELIX 14 14 SER B 118 SER B 130 1 13 HELIX 15 15 THR B 163 ILE B 169 1 7 HELIX 16 16 ASP B 185 SER B 195 1 11 HELIX 17 17 ARG B 205 ASN B 208 5 4 HELIX 18 18 ARG B 209 LYS B 215 1 7 HELIX 19 19 GLY C 9 ASP C 13 5 5 HELIX 20 20 ASP C 15 ASN C 33 1 19 HELIX 21 21 GLY C 43 ILE C 57 1 15 HELIX 22 22 GLY C 60 SER C 82 1 23 HELIX 23 23 SER C 94 SER C 103 1 10 HELIX 24 24 SER C 118 SER C 130 1 13 HELIX 25 25 THR C 163 ARG C 167 1 5 HELIX 26 26 ASP C 185 SER C 195 1 11 HELIX 27 27 ARG C 205 ASN C 208 5 4 HELIX 28 28 ARG C 209 GLY C 216 1 8 HELIX 29 29 GLY D 9 GLU D 14 5 6 HELIX 30 30 ASP D 18 ASN D 33 1 16 HELIX 31 31 GLY D 43 GLU D 56 1 14 HELIX 32 32 GLY D 60 LEU D 83 1 24 HELIX 33 33 SER D 94 SER D 103 1 10 HELIX 34 34 SER D 118 SER D 130 1 13 HELIX 35 35 THR D 163 GLY D 172 1 10 HELIX 36 36 THR D 180 LEU D 184 5 5 HELIX 37 37 ASP D 185 LYS D 196 1 12 HELIX 38 38 ARG D 205 ASN D 208 5 4 HELIX 39 39 ARG D 209 GLY D 216 1 8 HELIX 40 40 GLY E 9 ASP E 13 5 5 HELIX 41 41 LEU E 23 ASN E 33 1 11 HELIX 42 42 GLY E 43 ILE E 57 1 15 HELIX 43 43 GLY E 60 LEU E 83 1 24 HELIX 44 44 SER E 94 SER E 103 1 10 HELIX 45 45 SER E 118 SER E 130 1 13 HELIX 46 46 THR E 163 GLU E 171 1 9 HELIX 47 47 GLN E 177 GLU E 182 1 6 HELIX 48 48 ASP E 185 SER E 195 1 11 HELIX 49 49 ARG E 205 ASN E 208 5 4 HELIX 50 50 ARG E 209 GLY E 216 1 8 HELIX 51 51 GLY F 9 ASP F 13 5 5 HELIX 52 52 ASP F 18 ASN F 33 1 16 HELIX 53 53 GLY F 43 ILE F 57 1 15 HELIX 54 54 GLY F 60 LEU F 83 1 24 HELIX 55 55 SER F 94 SER F 103 1 10 HELIX 56 56 SER F 118 SER F 130 1 13 HELIX 57 57 THR F 163 ARG F 167 1 5 HELIX 58 58 ASP F 185 SER F 195 1 11 HELIX 59 59 ARG F 205 ASN F 208 5 4 HELIX 60 60 ARG F 209 GLY F 216 1 8 SHEET 1 AA 7 VAL A 108 THR A 110 0 SHEET 2 AA 7 ARG A 36 THR A 41 1 O VAL A 37 N VAL A 108 SHEET 3 AA 7 ASN A 2 ILE A 7 1 O ILE A 3 N GLY A 38 SHEET 4 AA 7 THR A 134 THR A 139 1 O THR A 134 N ILE A 4 SHEET 5 AA 7 ARG A 198 ASN A 203 1 O ARG A 198 N LEU A 135 SHEET 6 AA 7 SER A 221 GLU A 224 -1 O SER A 221 N VAL A 201 SHEET 7 AA 7 HIS A 160 THR A 162 1 O LEU A 161 N GLU A 224 SHEET 1 AB 2 VAL A 144 TYR A 145 0 SHEET 2 AB 2 LEU A 157 ILE A 158 -1 O ILE A 158 N VAL A 144 SHEET 1 BA 7 VAL B 108 THR B 110 0 SHEET 2 BA 7 ARG B 36 THR B 41 1 O VAL B 37 N VAL B 108 SHEET 3 BA 7 ASN B 2 ILE B 7 1 O ILE B 3 N GLY B 38 SHEET 4 BA 7 THR B 134 THR B 139 1 O THR B 134 N ILE B 4 SHEET 5 BA 7 ARG B 198 ASN B 203 1 O ARG B 198 N LEU B 135 SHEET 6 BA 7 SER B 221 GLU B 224 -1 O SER B 221 N VAL B 201 SHEET 7 BA 7 HIS B 160 THR B 162 1 O LEU B 161 N GLU B 224 SHEET 1 CA 7 VAL C 108 THR C 110 0 SHEET 2 CA 7 ARG C 36 THR C 41 1 O VAL C 37 N VAL C 108 SHEET 3 CA 7 ASN C 2 ILE C 7 1 O ILE C 3 N GLY C 38 SHEET 4 CA 7 THR C 134 THR C 139 1 O THR C 134 N ILE C 4 SHEET 5 CA 7 ARG C 198 ASN C 203 1 O ARG C 198 N LEU C 135 SHEET 6 CA 7 SER C 221 GLU C 224 -1 O SER C 221 N VAL C 201 SHEET 7 CA 7 HIS C 160 THR C 162 1 O LEU C 161 N GLU C 224 SHEET 1 DA 7 VAL D 108 THR D 110 0 SHEET 2 DA 7 ARG D 36 THR D 41 1 O VAL D 37 N VAL D 108 SHEET 3 DA 7 ASN D 2 ILE D 7 1 O ILE D 3 N GLY D 38 SHEET 4 DA 7 THR D 134 THR D 139 1 O THR D 134 N ILE D 4 SHEET 5 DA 7 ARG D 198 ASN D 203 1 O ARG D 198 N LEU D 135 SHEET 6 DA 7 SER D 221 GLU D 224 -1 O SER D 221 N VAL D 201 SHEET 7 DA 7 HIS D 160 THR D 162 1 O LEU D 161 N GLU D 224 SHEET 1 EA 7 VAL E 108 THR E 110 0 SHEET 2 EA 7 ARG E 36 THR E 41 1 O VAL E 37 N VAL E 108 SHEET 3 EA 7 ASN E 2 ILE E 7 1 O ILE E 3 N GLY E 38 SHEET 4 EA 7 THR E 134 THR E 139 1 O THR E 134 N ILE E 4 SHEET 5 EA 7 ARG E 198 ASN E 203 1 O ARG E 198 N LEU E 135 SHEET 6 EA 7 SER E 221 GLU E 224 -1 O SER E 221 N VAL E 201 SHEET 7 EA 7 HIS E 160 THR E 162 1 O LEU E 161 N GLU E 224 SHEET 1 EB 2 VAL E 144 TYR E 145 0 SHEET 2 EB 2 LEU E 157 ILE E 158 -1 O ILE E 158 N VAL E 144 SHEET 1 FA 7 VAL F 108 THR F 110 0 SHEET 2 FA 7 ARG F 36 THR F 41 1 O VAL F 37 N VAL F 108 SHEET 3 FA 7 ASN F 2 ILE F 7 1 O ILE F 3 N GLY F 38 SHEET 4 FA 7 THR F 134 THR F 139 1 O THR F 134 N ILE F 4 SHEET 5 FA 7 ARG F 198 ASN F 203 1 O ARG F 198 N LEU F 135 SHEET 6 FA 7 SER F 221 GLU F 224 -1 O SER F 221 N VAL F 201 SHEET 7 FA 7 HIS F 160 THR F 162 1 O LEU F 161 N GLU F 224 LINK NE2 HIS A 90 CD CD A 229 1555 1555 2.57 LINK NE2 HIS A 104 CD CD A 228 1555 1555 2.47 LINK NE2 HIS A 160 CD CD A 230 1555 1555 2.51 LINK O2P U5P A 227 MG MG A 231 1555 1555 2.84 LINK O3P U5P A 227 MG MG A 231 1555 1555 2.66 LINK CD CD A 228 NE2 HIS C 104 1555 1555 2.15 LINK CD CD A 228 NE2 HIS F 104 1555 1555 2.36 LINK CD CD A 229 O HOH A2020 1555 1555 2.72 LINK OD1 ASP B 15 CD CD B 234 1455 1555 3.05 LINK OD2 ASP B 15 CD CD B 234 1455 1555 2.83 LINK OD2 ASP B 18 CD CD B 233 1455 1555 2.58 LINK OD1 ASP B 18 CD CD B 233 1455 1555 2.41 LINK OD2 ASP B 18 CD CD B 234 1455 1555 2.78 LINK NE2 HIS B 90 CD CD B 229 1555 1555 2.44 LINK NE2 HIS B 104 CD CD B 228 1555 1555 2.37 LINK NE2 HIS B 160 CD CD B 230 1555 1555 2.62 LINK OE2 GLU B 224 CD CD B 232 1555 1555 2.72 LINK CD CD B 228 NE2 HIS D 104 1555 1555 2.33 LINK CD CD B 228 O HOH D2021 1555 1555 2.63 LINK CD CD B 228 OH TYR E 88 1555 1555 3.00 LINK CD CD B 228 NE2 HIS E 104 1555 1555 2.30 LINK CD CD B 229 O HOH B2008 1555 1555 2.65 LINK CD CD B 229 O HOH B2020 1555 1555 2.31 LINK CD CD B 230 OE1 GLU F 29 1555 1656 2.45 LINK CD CD B 230 O HOH F2003 1555 1656 2.43 LINK CD CD B 231 O HOH B2036 1555 1555 2.42 LINK CD CD B 232 OD1 ASP F 212 1555 1656 2.61 LINK CD CD B 233 O HOH B2004 1555 1455 2.51 LINK CD CD B 233 O HOH B2005 1555 1455 2.83 LINK CD CD B 233 OD1 ASP C 18 1555 1555 2.49 LINK CD CD B 233 OD2 ASP C 18 1555 1555 2.68 LINK CD CD B 234 O HOH C2001 1555 1555 2.57 LINK OD2 ASP C 15 CD CD C 231 1555 1555 2.75 LINK OD1 ASP C 15 CD CD C 231 1555 1555 2.86 LINK OD2 ASP C 18 CD CD C 231 1555 1555 2.59 LINK NE2 HIS C 90 CD CD C 228 1555 1555 2.47 LINK NE2 HIS C 160 CD CD C 229 1555 1555 2.61 LINK CD CD C 231 O HOH C2001 1555 1555 2.86 LINK NE2 HIS D 90 CD CD D 228 1555 1555 2.47 LINK CD CD D 228 O HOH D2007 1555 1555 2.84 LINK CD CD D 228 O HOH D2024 1555 1555 2.33 LINK NE2 HIS E 90 CD CD E 228 1555 1555 2.45 LINK NE2 HIS E 160 CD CD E 229 1555 1555 2.27 LINK OD1 ASP E 165 CD CD F 229 1455 1555 2.74 LINK OD2 ASP E 165 CD CD F 229 1455 1555 2.45 LINK CD CD E 228 O HOH E2020 1555 1555 2.43 LINK CD CD E 229 OD1 ASP F 165 1555 1655 3.11 LINK CD CD E 229 OD2 ASP F 165 1555 1655 2.35 LINK CD CD E 229 O HOH F2037 1555 1655 2.57 LINK O HOH E2036 CD CD F 229 1455 1555 2.47 LINK NE2 HIS F 90 CD CD F 228 1555 1555 2.55 LINK NE2 HIS F 160 CD CD F 229 1555 1555 2.58 LINK CD CD F 228 O HOH F2002 1555 1555 2.56 LINK CD CD F 228 O HOH F2017 1555 1555 2.42 LINK CD CD F 229 O HOH F2035 1555 1555 2.21 SITE 1 AC1 6 TYR A 88 HIS A 104 TYR C 88 HIS C 104 SITE 2 AC1 6 TYR F 88 HIS F 104 SITE 1 AC2 2 HIS A 90 HOH A2020 SITE 1 AC3 2 HIS A 160 LYS C 147 SITE 1 AC4 1 U5P A 227 SITE 1 AC5 7 TYR B 88 HIS B 104 TYR D 88 HIS D 104 SITE 2 AC5 7 HOH D2021 TYR E 88 HIS E 104 SITE 1 AC6 3 HIS B 90 HOH B2008 HOH B2020 SITE 1 AC7 3 HIS B 160 GLU F 29 HOH F2003 SITE 1 AC8 2 GLU B 146 HOH B2036 SITE 1 AC9 2 GLU B 224 ASP F 212 SITE 1 BC1 4 ASP B 18 HOH B2004 HOH B2005 ASP C 18 SITE 1 BC2 4 ASP B 15 ASP B 18 CD C 231 HOH C2001 SITE 1 BC3 1 HIS C 90 SITE 1 BC4 1 HIS C 160 SITE 1 BC5 4 CD B 234 ASP C 15 ASP C 18 HOH C2001 SITE 1 BC6 3 HIS D 90 HOH D2007 HOH D2024 SITE 1 BC7 2 HIS E 90 HOH E2020 SITE 1 BC8 3 HIS E 160 ASP F 165 HOH F2037 SITE 1 BC9 3 HIS F 90 HOH F2002 HOH F2017 SITE 1 CC1 4 ASP E 165 HOH E2036 HIS F 160 HOH F2035 SITE 1 CC2 15 GLY A 42 GLY A 43 ASP A 65 GLY A 68 SITE 2 CC2 15 ILE A 69 GLY A 112 PHE A 113 GLN A 114 SITE 3 CC2 15 PRO A 115 GLY A 116 GLN A 117 THR A 119 SITE 4 CC2 15 VAL A 122 MG A 231 HOH A2040 SITE 1 CC3 14 GLY B 43 ASP B 65 GLY B 68 ILE B 69 SITE 2 CC3 14 GLY B 112 PHE B 113 GLN B 114 PRO B 115 SITE 3 CC3 14 GLN B 117 THR B 119 VAL B 122 HOH B2003 SITE 4 CC3 14 HOH B2048 HOH B2049 SITE 1 CC4 14 GLY C 42 GLY C 43 ILE C 51 ASP C 65 SITE 2 CC4 14 GLY C 68 ILE C 69 GLY C 112 PHE C 113 SITE 3 CC4 14 GLN C 114 PRO C 115 GLN C 117 THR C 119 SITE 4 CC4 14 VAL C 122 HOH C2025 SITE 1 CC5 15 GLY D 42 GLY D 43 ASP D 65 GLY D 68 SITE 2 CC5 15 ILE D 69 GLY D 112 PHE D 113 GLN D 114 SITE 3 CC5 15 PRO D 115 GLN D 117 SER D 118 THR D 119 SITE 4 CC5 15 VAL D 122 HOH D2050 HOH D2051 SITE 1 CC6 16 GLY E 42 GLY E 43 ASP E 65 GLY E 68 SITE 2 CC6 16 ILE E 69 GLY E 112 PHE E 113 GLN E 114 SITE 3 CC6 16 PRO E 115 GLY E 116 GLN E 117 SER E 118 SITE 4 CC6 16 THR E 119 VAL E 122 HOH E2049 HOH E2050 SITE 1 CC7 16 GLY F 42 GLY F 43 ASP F 65 GLY F 68 SITE 2 CC7 16 ILE F 69 GLY F 112 PHE F 113 GLN F 114 SITE 3 CC7 16 PRO F 115 GLY F 116 GLN F 117 THR F 119 SITE 4 CC7 16 VAL F 122 HOH F2007 HOH F2043 HOH F2044 CRYST1 74.802 136.043 77.938 90.00 113.17 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013369 0.000000 0.005722 0.00000 SCALE2 0.000000 0.007351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013956 0.00000 MTRIX1 1 0.071120 0.980540 0.182970 16.83306 1 MTRIX2 1 0.981390 -0.101590 0.162970 -21.09241 1 MTRIX3 1 0.178390 0.167970 -0.969520 12.63131 1 MTRIX1 2 -0.063980 -0.978520 -0.195980 23.53060 1 MTRIX2 2 -0.128480 0.202830 -0.970750 10.86741 1 MTRIX3 2 0.989650 -0.036930 -0.138690 -10.63717 1 MTRIX1 3 -0.999140 0.026930 0.031500 40.39445 1 MTRIX2 3 0.021440 -0.314600 0.948980 -7.81938 1 MTRIX3 3 0.035470 0.948840 0.313760 4.01760 1 MTRIX1 4 0.004830 0.127680 -0.991800 28.51852 1 MTRIX2 4 0.120810 -0.984620 -0.126170 -0.25522 1 MTRIX3 4 -0.992660 -0.119210 -0.020180 29.03557 1 MTRIX1 5 -0.029080 -0.152570 0.987870 12.74366 1 MTRIX2 5 -0.976570 0.215150 0.004490 20.22204 1 MTRIX3 5 -0.213220 -0.964590 -0.155250 14.28471 1