HEADER HYDROLASE 05-SEP-06 2J4R TITLE STRUCTURAL STUDY OF THE AQUIFEX AEOLICUS PPX-GPPA ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOPOLYPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 7-310; COMPND 5 SYNONYM: GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET28-A KEYWDS PPGPP, AQUIFEX AEOLICUS, STRINGENT RESPONSE, HYDROLASE, KEYWDS 2 EXOPOLYPHOSPHATASE, GUANOSINE PENTAPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR O.KRISTENSEN REVDAT 6 13-DEC-23 2J4R 1 HETSYN REVDAT 5 17-JAN-18 2J4R 1 REMARK REVDAT 4 24-FEB-09 2J4R 1 VERSN REVDAT 3 29-JAN-08 2J4R 1 JRNL REVDAT 2 22-JAN-08 2J4R 1 JRNL REVDAT 1 16-OCT-07 2J4R 0 JRNL AUTH O.KRISTENSEN,B.ROSS,M.GAJHEDE JRNL TITL STRUCTURE OF THE PPX/GPPA PHOSPHATASE FROM AQUIFEX AEOLICUS JRNL TITL 2 IN COMPLEX WITH THE ALARMONE PPGPP JRNL REF J.MOL.BIOL. V. 375 1469 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18155044 JRNL DOI 10.1016/J.JMB.2007.11.073 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.KRISTENSEN,M.LAURBERG,A.LILJAS,J.S.KASTRUP,M.GAJHEDE REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE STRINGENT RESPONSE REMARK 1 TITL 2 RELATED EXOPOLYPHOSPHATASE-GUANOSINE PENTAPHOSPHATE REMARK 1 TITL 3 PHOSPHOHYDROLASE PROTEIN FAMILY REMARK 1 REF BIOCHEMISTRY V. 43 8894 2004 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15248747 REMARK 1 DOI 10.1021/BI049083C REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1874853.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 17621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 439 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2571 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 61 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.044 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22400 REMARK 3 B22 (A**2) : -0.22400 REMARK 3 B33 (A**2) : 0.44900 REMARK 3 B12 (A**2) : -5.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 60.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : G4P_CNS_PRODRG.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : G4P_CNS_PRODRG.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.085 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 74.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1T6C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, MES, MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.14000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.57000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.57000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 149.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 19 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TYR 19 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 LEU A 307 REMARK 465 LYS A 308 REMARK 465 GLU A 309 REMARK 465 ASN A 310 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 MET B 6 REMARK 465 LEU B 307 REMARK 465 LYS B 308 REMARK 465 GLU B 309 REMARK 465 ASN B 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 306 CA C O CB CG1 CG2 REMARK 470 VAL B 306 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -91.26 -68.19 REMARK 500 LEU A 37 145.94 -171.69 REMARK 500 THR A 47 124.09 -38.72 REMARK 500 LYS A 48 20.88 49.55 REMARK 500 ILE A 74 -71.37 -47.83 REMARK 500 LYS A 78 41.24 34.00 REMARK 500 GLU A 80 35.32 -79.15 REMARK 500 ARG A 81 110.73 -174.41 REMARK 500 PRO A 133 151.61 -48.89 REMARK 500 PRO A 164 -7.26 -58.06 REMARK 500 ILE A 165 70.85 -58.05 REMARK 500 ILE A 167 -38.28 -39.10 REMARK 500 TYR A 224 -79.43 -85.55 REMARK 500 PRO A 225 109.89 -55.60 REMARK 500 GLN A 229 -29.11 -150.01 REMARK 500 VAL A 231 -50.70 -120.32 REMARK 500 ALA A 268 -44.37 -29.26 REMARK 500 GLU A 286 73.73 41.68 REMARK 500 SER A 304 81.84 -55.44 REMARK 500 GLU A 305 -54.27 92.24 REMARK 500 ASP B 30 85.16 35.75 REMARK 500 THR B 47 41.46 -64.92 REMARK 500 LYS B 50 -138.45 -61.64 REMARK 500 GLU B 51 102.40 -56.80 REMARK 500 THR B 52 -48.38 -13.98 REMARK 500 ARG B 54 -148.57 153.90 REMARK 500 GLU B 88 75.27 -0.81 REMARK 500 ALA B 89 -32.13 179.79 REMARK 500 ARG B 105 83.52 49.26 REMARK 500 GLU B 106 -13.91 144.70 REMARK 500 VAL B 107 -38.83 -143.66 REMARK 500 LEU B 131 -18.28 -145.54 REMARK 500 LYS B 132 53.63 35.94 REMARK 500 PRO B 164 25.65 -62.80 REMARK 500 ILE B 167 -9.96 -59.26 REMARK 500 LYS B 201 157.66 171.38 REMARK 500 TYR B 224 -72.25 -83.23 REMARK 500 GLU B 264 -162.46 -55.32 REMARK 500 SER B 304 75.44 -35.12 REMARK 500 GLU B 305 -98.92 154.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2029 DISTANCE = 5.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G4P A1307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T6C RELATED DB: PDB REMARK 900 STRUCTURAL CHARACTERIZATION OF THE PPX/GPPA PROTEIN FAMILY:CRYSTAL REMARK 900 STRUCTURE OF THE AQUIFEX AEOLICUS FAMILY MEMBER REMARK 900 RELATED ID: 1T6D RELATED DB: PDB REMARK 900 MIRAS PHASING OF THE AQUIFEX AEOLICUS PPX/ GPPA PHOSPHATASE:CRYSTAL REMARK 900 STRUCTURE OF THE TYPE II VARIANT DBREF 2J4R A 3 6 PDB 2J4R 2J4R 3 6 DBREF 2J4R A 7 310 UNP O67040 O67040_AQUAE 7 310 DBREF 2J4R B 3 6 PDB 2J4R 2J4R 3 6 DBREF 2J4R B 7 310 UNP O67040 O67040_AQUAE 7 310 SEQADV 2J4R ASN A 19 UNP O67040 TYR 19 ENGINEERED MUTATION SEQADV 2J4R ASN B 19 UNP O67040 TYR 19 ENGINEERED MUTATION SEQRES 1 A 308 GLY SER HIS MET PRO ILE MET ARG VAL ALA SER ILE ASP SEQRES 2 A 308 ILE GLY SER ASN SER VAL ARG LEU THR ILE ALA GLN ILE SEQRES 3 A 308 LYS ASP GLY LYS LEU SER ILE ILE LEU GLU ARG GLY ARG SEQRES 4 A 308 ILE THR SER LEU GLY THR LYS VAL LYS GLU THR GLY ARG SEQRES 5 A 308 LEU GLN GLU ASP ARG ILE GLU GLU THR ILE GLN VAL LEU SEQRES 6 A 308 LYS GLU TYR LYS LYS LEU ILE ASP GLU PHE LYS VAL GLU SEQRES 7 A 308 ARG VAL LYS ALA VAL ALA THR GLU ALA ILE ARG ARG ALA SEQRES 8 A 308 LYS ASN ALA GLU GLU PHE LEU GLU ARG VAL LYS ARG GLU SEQRES 9 A 308 VAL GLY LEU VAL VAL GLU VAL ILE THR PRO GLU GLN GLU SEQRES 10 A 308 GLY ARG TYR ALA TYR LEU ALA VAL ALA TYR SER LEU LYS SEQRES 11 A 308 PRO GLU GLY GLU VAL CYS VAL VAL ASP GLN GLY GLY GLY SEQRES 12 A 308 SER THR GLU TYR VAL PHE GLY LYS GLY TYR LYS VAL ARG SEQRES 13 A 308 GLU VAL ILE SER LEU PRO ILE GLY ILE VAL ASN LEU THR SEQRES 14 A 308 GLU THR PHE PHE LYS GLN ASP PRO PRO THR GLU GLU GLU SEQRES 15 A 308 VAL LYS ARG PHE PHE GLU PHE LEU GLU LYS GLU LEU SER SEQRES 16 A 308 LYS VAL LYS LYS PRO VAL ASP THR ILE VAL GLY LEU GLY SEQRES 17 A 308 GLY THR ILE THR THR LEU ALA ALA LEU GLU TYR ASN VAL SEQRES 18 A 308 TYR PRO TYR ASP PRO GLN LYS VAL HIS GLY LYS VAL LEU SEQRES 19 A 308 THR TYR GLY GLN ILE LYS LYS TRP PHE ASP THR PHE LYS SEQRES 20 A 308 GLU ILE PRO SER GLU GLU ARG SER LYS ARG PHE ARG GLN SEQRES 21 A 308 VAL GLU ASP ARG ARG ALA LYS VAL ILE LEU ALA GLY ILE SEQRES 22 A 308 GLY ILE PHE LEU LYS THR LEU GLU ILE PHE GLU LYS ASP SEQRES 23 A 308 CYS LEU ILE VAL SER ASP TRP GLY LEU ARG GLU GLY VAL SEQRES 24 A 308 LEU VAL SER GLU VAL LEU LYS GLU ASN SEQRES 1 B 308 GLY SER HIS MET PRO ILE MET ARG VAL ALA SER ILE ASP SEQRES 2 B 308 ILE GLY SER ASN SER VAL ARG LEU THR ILE ALA GLN ILE SEQRES 3 B 308 LYS ASP GLY LYS LEU SER ILE ILE LEU GLU ARG GLY ARG SEQRES 4 B 308 ILE THR SER LEU GLY THR LYS VAL LYS GLU THR GLY ARG SEQRES 5 B 308 LEU GLN GLU ASP ARG ILE GLU GLU THR ILE GLN VAL LEU SEQRES 6 B 308 LYS GLU TYR LYS LYS LEU ILE ASP GLU PHE LYS VAL GLU SEQRES 7 B 308 ARG VAL LYS ALA VAL ALA THR GLU ALA ILE ARG ARG ALA SEQRES 8 B 308 LYS ASN ALA GLU GLU PHE LEU GLU ARG VAL LYS ARG GLU SEQRES 9 B 308 VAL GLY LEU VAL VAL GLU VAL ILE THR PRO GLU GLN GLU SEQRES 10 B 308 GLY ARG TYR ALA TYR LEU ALA VAL ALA TYR SER LEU LYS SEQRES 11 B 308 PRO GLU GLY GLU VAL CYS VAL VAL ASP GLN GLY GLY GLY SEQRES 12 B 308 SER THR GLU TYR VAL PHE GLY LYS GLY TYR LYS VAL ARG SEQRES 13 B 308 GLU VAL ILE SER LEU PRO ILE GLY ILE VAL ASN LEU THR SEQRES 14 B 308 GLU THR PHE PHE LYS GLN ASP PRO PRO THR GLU GLU GLU SEQRES 15 B 308 VAL LYS ARG PHE PHE GLU PHE LEU GLU LYS GLU LEU SER SEQRES 16 B 308 LYS VAL LYS LYS PRO VAL ASP THR ILE VAL GLY LEU GLY SEQRES 17 B 308 GLY THR ILE THR THR LEU ALA ALA LEU GLU TYR ASN VAL SEQRES 18 B 308 TYR PRO TYR ASP PRO GLN LYS VAL HIS GLY LYS VAL LEU SEQRES 19 B 308 THR TYR GLY GLN ILE LYS LYS TRP PHE ASP THR PHE LYS SEQRES 20 B 308 GLU ILE PRO SER GLU GLU ARG SER LYS ARG PHE ARG GLN SEQRES 21 B 308 VAL GLU ASP ARG ARG ALA LYS VAL ILE LEU ALA GLY ILE SEQRES 22 B 308 GLY ILE PHE LEU LYS THR LEU GLU ILE PHE GLU LYS ASP SEQRES 23 B 308 CYS LEU ILE VAL SER ASP TRP GLY LEU ARG GLU GLY VAL SEQRES 24 B 308 LEU VAL SER GLU VAL LEU LYS GLU ASN HET G4P A1307 36 HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 3 G4P C10 H17 N5 O17 P4 FORMUL 4 HOH *169(H2 O) HELIX 1 1 LYS A 48 GLY A 53 1 6 HELIX 2 2 GLN A 56 PHE A 77 1 22 HELIX 3 3 GLU A 88 LYS A 94 5 7 HELIX 4 4 ASN A 95 VAL A 107 1 13 HELIX 5 5 THR A 115 LEU A 131 1 17 HELIX 6 6 GLY A 166 PHE A 175 1 10 HELIX 7 7 THR A 181 SER A 197 1 17 HELIX 8 8 GLY A 210 TYR A 221 1 12 HELIX 9 9 TYR A 238 GLU A 250 1 13 HELIX 10 10 PRO A 252 PHE A 260 1 9 HELIX 11 11 GLU A 264 LYS A 269 1 6 HELIX 12 12 VAL A 270 PHE A 285 1 16 HELIX 13 13 GLY A 296 SER A 304 1 9 HELIX 14 14 GLN B 56 PHE B 77 1 22 HELIX 15 15 ASN B 95 LYS B 104 1 10 HELIX 16 16 THR B 115 LYS B 132 1 18 HELIX 17 17 VAL B 168 PHE B 175 1 8 HELIX 18 18 THR B 181 SER B 197 1 17 HELIX 19 19 GLY B 210 ASN B 222 1 13 HELIX 20 20 ASP B 227 VAL B 231 5 5 HELIX 21 21 TYR B 238 ILE B 251 1 14 HELIX 22 22 PRO B 252 PHE B 260 1 9 HELIX 23 23 ARG B 266 PHE B 285 1 20 HELIX 24 24 GLY B 296 SER B 304 1 9 SHEET 1 AA 5 LEU A 33 ILE A 42 0 SHEET 2 AA 5 SER A 20 ILE A 28 -1 O VAL A 21 N ARG A 41 SHEET 3 AA 5 MET A 9 ILE A 16 -1 O MET A 9 N ILE A 28 SHEET 4 AA 5 VAL A 82 ALA A 86 1 O LYS A 83 N ILE A 14 SHEET 5 AA 5 VAL A 111 VAL A 113 1 O GLU A 112 N ALA A 86 SHEET 1 AB 6 LYS A 156 LEU A 163 0 SHEET 2 AB 6 THR A 147 LYS A 153 -1 O THR A 147 N LEU A 163 SHEET 3 AB 6 VAL A 137 GLN A 142 -1 O VAL A 137 N GLY A 152 SHEET 4 AB 6 THR A 205 LEU A 209 1 O THR A 205 N CYS A 138 SHEET 5 AB 6 CYS A 289 VAL A 292 1 O ILE A 291 N GLY A 208 SHEET 6 AB 6 VAL A 235 THR A 237 -1 O LEU A 236 N LEU A 290 SHEET 1 BA 5 LYS B 32 ILE B 42 0 SHEET 2 BA 5 SER B 20 LYS B 29 -1 O VAL B 21 N ARG B 41 SHEET 3 BA 5 MET B 9 ILE B 16 -1 O MET B 9 N ILE B 28 SHEET 4 BA 5 ARG B 81 THR B 87 1 O ARG B 81 N ALA B 12 SHEET 5 BA 5 GLU B 112 ILE B 114 1 O GLU B 112 N ALA B 86 SHEET 1 BB 6 LYS B 156 LEU B 163 0 SHEET 2 BB 6 THR B 147 LYS B 153 -1 O THR B 147 N LEU B 163 SHEET 3 BB 6 VAL B 137 GLN B 142 -1 O VAL B 137 N GLY B 152 SHEET 4 BB 6 THR B 205 LEU B 209 1 O THR B 205 N CYS B 138 SHEET 5 BB 6 CYS B 289 VAL B 292 1 O ILE B 291 N GLY B 208 SHEET 6 BB 6 LYS B 234 THR B 237 -1 O LYS B 234 N VAL B 292 CISPEP 1 ASP A 178 PRO A 179 0 -0.04 CISPEP 2 ASP B 178 PRO B 179 0 -0.11 SITE 1 AC1 14 GLY A 17 SER A 18 ASN A 19 SER A 20 SITE 2 AC1 14 ARG A 22 ILE A 42 THR A 87 GLN A 142 SITE 3 AC1 14 GLU A 159 GLY A 211 ARG A 266 ARG A 267 SITE 4 AC1 14 HOH A2070 HOH A2079 CRYST1 70.460 70.460 223.710 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014192 0.008194 0.000000 0.00000 SCALE2 0.000000 0.016388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004470 0.00000 MTRIX1 1 -0.986030 0.017210 0.165690 -60.31409 1 MTRIX2 1 0.021730 0.999440 0.025480 -0.46948 1 MTRIX3 1 -0.165160 0.028720 -0.985850 -39.36101 1