data_2J6J # _entry.id 2J6J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2J6J PDBE EBI-30114 WWPDB D_1290030114 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2016-03-02 _pdbx_database_PDB_obs_spr.pdb_id 5I2S _pdbx_database_PDB_obs_spr.replace_pdb_id 2J6J _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2J6J _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-09-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Roche, S.' 1 'Rey, F.A.' 2 'Bressanelli, S.' 3 # _citation.id primary _citation.title 'Structure of the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G.' _citation.journal_abbrev Science _citation.journal_volume 315 _citation.page_first 843 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17289996 _citation.pdbx_database_id_DOI 10.1126/SCIENCE.1135710 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Roche, S.' 1 primary 'Rey, F.A.' 2 primary 'Gaudin, Y.' 3 primary 'Bressanelli, S.' 4 # _cell.entry_id 2J6J _cell.length_a 120.510 _cell.length_b 120.510 _cell.length_c 183.130 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J6J _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'SPIKE GLYCOPROTEIN' 47332.020 1 ? ? 'ECTODOMAIN, RESIDUES 17-438' ? 2 non-polymer man N-ACETYL-D-GLUCOSAMINE 221.208 3 ? ? ? ? 3 non-polymer syn 'YTTERBIUM (III) ION' 173.040 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VSV GLYCOPROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS KAQVFEHPHIQDAASQLPDDES ; _entity_poly.pdbx_seq_one_letter_code_can ;KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS KAQVFEHPHIQDAASQLPDDES ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 PHE n 1 3 THR n 1 4 ILE n 1 5 VAL n 1 6 PHE n 1 7 PRO n 1 8 HIS n 1 9 ASN n 1 10 GLN n 1 11 LYS n 1 12 GLY n 1 13 ASN n 1 14 TRP n 1 15 LYS n 1 16 ASN n 1 17 VAL n 1 18 PRO n 1 19 SER n 1 20 ASN n 1 21 TYR n 1 22 HIS n 1 23 TYR n 1 24 CYS n 1 25 PRO n 1 26 SER n 1 27 SER n 1 28 SER n 1 29 ASP n 1 30 LEU n 1 31 ASN n 1 32 TRP n 1 33 HIS n 1 34 ASN n 1 35 ASP n 1 36 LEU n 1 37 ILE n 1 38 GLY n 1 39 THR n 1 40 ALA n 1 41 ILE n 1 42 GLN n 1 43 VAL n 1 44 LYS n 1 45 MET n 1 46 PRO n 1 47 LYS n 1 48 SER n 1 49 HIS n 1 50 LYS n 1 51 ALA n 1 52 ILE n 1 53 GLN n 1 54 ALA n 1 55 ASP n 1 56 GLY n 1 57 TRP n 1 58 MET n 1 59 CYS n 1 60 HIS n 1 61 ALA n 1 62 SER n 1 63 LYS n 1 64 TRP n 1 65 VAL n 1 66 THR n 1 67 THR n 1 68 CYS n 1 69 ASP n 1 70 PHE n 1 71 ARG n 1 72 TRP n 1 73 TYR n 1 74 GLY n 1 75 PRO n 1 76 LYS n 1 77 TYR n 1 78 ILE n 1 79 THR n 1 80 GLN n 1 81 SER n 1 82 ILE n 1 83 ARG n 1 84 SER n 1 85 PHE n 1 86 THR n 1 87 PRO n 1 88 SER n 1 89 VAL n 1 90 GLU n 1 91 GLN n 1 92 CYS n 1 93 LYS n 1 94 GLU n 1 95 SER n 1 96 ILE n 1 97 GLU n 1 98 GLN n 1 99 THR n 1 100 LYS n 1 101 GLN n 1 102 GLY n 1 103 THR n 1 104 TRP n 1 105 LEU n 1 106 ASN n 1 107 PRO n 1 108 GLY n 1 109 PHE n 1 110 PRO n 1 111 PRO n 1 112 GLN n 1 113 SER n 1 114 CYS n 1 115 GLY n 1 116 TYR n 1 117 ALA n 1 118 THR n 1 119 VAL n 1 120 THR n 1 121 ASP n 1 122 ALA n 1 123 GLU n 1 124 ALA n 1 125 VAL n 1 126 ILE n 1 127 VAL n 1 128 GLN n 1 129 VAL n 1 130 THR n 1 131 PRO n 1 132 HIS n 1 133 HIS n 1 134 VAL n 1 135 LEU n 1 136 VAL n 1 137 ASP n 1 138 GLU n 1 139 TYR n 1 140 THR n 1 141 GLY n 1 142 GLU n 1 143 TRP n 1 144 VAL n 1 145 ASP n 1 146 SER n 1 147 GLN n 1 148 PHE n 1 149 ILE n 1 150 ASN n 1 151 GLY n 1 152 LYS n 1 153 CYS n 1 154 SER n 1 155 ASN n 1 156 TYR n 1 157 ILE n 1 158 CYS n 1 159 PRO n 1 160 THR n 1 161 VAL n 1 162 HIS n 1 163 ASN n 1 164 SER n 1 165 THR n 1 166 THR n 1 167 TRP n 1 168 HIS n 1 169 SER n 1 170 ASP n 1 171 TYR n 1 172 LYS n 1 173 VAL n 1 174 LYS n 1 175 GLY n 1 176 LEU n 1 177 CYS n 1 178 ASP n 1 179 SER n 1 180 ASN n 1 181 LEU n 1 182 ILE n 1 183 SER n 1 184 MET n 1 185 ASP n 1 186 ILE n 1 187 THR n 1 188 PHE n 1 189 PHE n 1 190 SER n 1 191 GLU n 1 192 ASP n 1 193 GLY n 1 194 GLU n 1 195 LEU n 1 196 SER n 1 197 SER n 1 198 LEU n 1 199 GLY n 1 200 LYS n 1 201 GLU n 1 202 GLY n 1 203 THR n 1 204 GLY n 1 205 PHE n 1 206 ARG n 1 207 SER n 1 208 ASN n 1 209 TYR n 1 210 PHE n 1 211 ALA n 1 212 TYR n 1 213 GLU n 1 214 THR n 1 215 GLY n 1 216 GLY n 1 217 LYS n 1 218 ALA n 1 219 CYS n 1 220 LYS n 1 221 MET n 1 222 GLN n 1 223 TYR n 1 224 CYS n 1 225 LYS n 1 226 HIS n 1 227 TRP n 1 228 GLY n 1 229 VAL n 1 230 ARG n 1 231 LEU n 1 232 PRO n 1 233 SER n 1 234 GLY n 1 235 VAL n 1 236 TRP n 1 237 PHE n 1 238 GLU n 1 239 MET n 1 240 ALA n 1 241 ASP n 1 242 LYS n 1 243 ASP n 1 244 LEU n 1 245 PHE n 1 246 ALA n 1 247 ALA n 1 248 ALA n 1 249 ARG n 1 250 PHE n 1 251 PRO n 1 252 GLU n 1 253 CYS n 1 254 PRO n 1 255 GLU n 1 256 GLY n 1 257 SER n 1 258 SER n 1 259 ILE n 1 260 SER n 1 261 ALA n 1 262 PRO n 1 263 SER n 1 264 GLN n 1 265 THR n 1 266 SER n 1 267 VAL n 1 268 ASP n 1 269 VAL n 1 270 SER n 1 271 LEU n 1 272 ILE n 1 273 GLN n 1 274 ASP n 1 275 VAL n 1 276 GLU n 1 277 ARG n 1 278 ILE n 1 279 LEU n 1 280 ASP n 1 281 TYR n 1 282 SER n 1 283 LEU n 1 284 CYS n 1 285 GLN n 1 286 GLU n 1 287 THR n 1 288 TRP n 1 289 SER n 1 290 LYS n 1 291 ILE n 1 292 ARG n 1 293 ALA n 1 294 GLY n 1 295 LEU n 1 296 PRO n 1 297 ILE n 1 298 SER n 1 299 PRO n 1 300 VAL n 1 301 ASP n 1 302 LEU n 1 303 SER n 1 304 TYR n 1 305 LEU n 1 306 ALA n 1 307 PRO n 1 308 LYS n 1 309 ASN n 1 310 PRO n 1 311 GLY n 1 312 THR n 1 313 GLY n 1 314 PRO n 1 315 ALA n 1 316 PHE n 1 317 THR n 1 318 ILE n 1 319 ILE n 1 320 ASN n 1 321 GLY n 1 322 THR n 1 323 LEU n 1 324 LYS n 1 325 TYR n 1 326 PHE n 1 327 GLU n 1 328 THR n 1 329 ARG n 1 330 TYR n 1 331 ILE n 1 332 ARG n 1 333 VAL n 1 334 ASP n 1 335 ILE n 1 336 ALA n 1 337 ALA n 1 338 PRO n 1 339 ILE n 1 340 LEU n 1 341 SER n 1 342 ARG n 1 343 MET n 1 344 VAL n 1 345 GLY n 1 346 MET n 1 347 ILE n 1 348 SER n 1 349 GLY n 1 350 THR n 1 351 THR n 1 352 THR n 1 353 GLU n 1 354 ARG n 1 355 GLU n 1 356 LEU n 1 357 TRP n 1 358 ASP n 1 359 ASP n 1 360 TRP n 1 361 ALA n 1 362 PRO n 1 363 TYR n 1 364 GLU n 1 365 ASP n 1 366 VAL n 1 367 GLU n 1 368 ILE n 1 369 GLY n 1 370 PRO n 1 371 ASN n 1 372 GLY n 1 373 VAL n 1 374 LEU n 1 375 ARG n 1 376 THR n 1 377 SER n 1 378 SER n 1 379 GLY n 1 380 TYR n 1 381 LYS n 1 382 PHE n 1 383 PRO n 1 384 LEU n 1 385 TYR n 1 386 MET n 1 387 ILE n 1 388 GLY n 1 389 HIS n 1 390 GLY n 1 391 MET n 1 392 LEU n 1 393 ASP n 1 394 SER n 1 395 ASP n 1 396 LEU n 1 397 HIS n 1 398 LEU n 1 399 SER n 1 400 SER n 1 401 LYS n 1 402 ALA n 1 403 GLN n 1 404 VAL n 1 405 PHE n 1 406 GLU n 1 407 HIS n 1 408 PRO n 1 409 HIS n 1 410 ILE n 1 411 GLN n 1 412 ASP n 1 413 ALA n 1 414 ALA n 1 415 SER n 1 416 GLN n 1 417 LEU n 1 418 PRO n 1 419 ASP n 1 420 ASP n 1 421 GLU n 1 422 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name VSIV _entity_src_nat.pdbx_organism_scientific 'VESICULAR STOMATITIS INDIANA VIRUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 11277 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain MUDD-SUMMERS _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VGLG_VSVSJ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P03522 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2J6J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 422 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03522 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 438 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 422 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG D-saccharide . N-ACETYL-D-GLUCOSAMINE ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YB non-polymer . 'YTTERBIUM (III) ION' ? 'Yb 3' 173.040 # _exptl.entry_id 2J6J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.8 _exptl_crystal.density_percent_sol 68 _exptl_crystal.description 'STATISTICS ARE FOR PROCESSING WITH FRIEDEL MATES KEPT SEPARATE.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.70 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M TRIS PH 8.7, NANO3 0.4M, PEG 4000 24%.' # _diffrn.id 1 _diffrn.ambient_temp 120.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-01-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3861 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.3861 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2J6J _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.0 _reflns.d_resolution_high 3.0 _reflns.number_obs 29096 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.110 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.6 _reflns.B_iso_Wilson_estimate 44.00 _reflns.pdbx_redundancy 2.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.20 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 1.90 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2J6J _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 16107 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.94 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.220 _refine.ls_R_factor_R_free 0.282 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.160 _refine.ls_number_reflns_R_free 816 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.913 _refine.correlation_coeff_Fo_to_Fc_free 0.867 _refine.B_iso_mean 49.78 _refine.aniso_B[1][1] -0.06400 _refine.aniso_B[2][2] -0.06400 _refine.aniso_B[3][3] 0.09600 _refine.aniso_B[1][2] -0.03200 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 63 TO 81 AND 111 TO 122 WERE MODELLED AFTER PDB ENTRY 2CMZ, WITH MINIMAL REFINEMENT. ; _refine.pdbx_starting_model 'PDB ENTRY 2CMZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.852 _refine.pdbx_overall_ESU_R_Free 0.401 _refine.overall_SU_ML 0.315 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 38.394 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3263 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3307 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 14.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 3413 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.271 1.946 ? 4654 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.010 5.000 ? 412 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.625 24.267 ? 150 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.265 15.000 ? 534 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.008 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 499 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 2601 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 1412 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.314 0.200 ? 2327 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.160 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.231 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.184 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.400 1.500 ? 2101 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.729 2.000 ? 3343 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.002 3.000 ? 1521 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.752 4.500 ? 1311 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.08 _refine_ls_shell.number_reflns_R_work 1028 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.406 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2J6J _struct.title 'Prefusion form of the Vesicular Stomatitis Virus Glycoprotein G ectodomain' _struct.pdbx_descriptor 'SPIKE GLYCOPROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2J6J _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRION PROTEIN, MEMBRANE PROTEIN, ENVELOPE PROTEIN, TRANSMEMBRANE FUSION, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 88 ? GLN A 101 ? SER A 88 GLN A 101 1 ? 14 HELX_P HELX_P2 2 GLU A 194 ? LEU A 198 ? GLU A 194 LEU A 198 5 ? 5 HELX_P HELX_P3 3 ASP A 241 ? ARG A 249 ? ASP A 241 ARG A 249 1 ? 9 HELX_P HELX_P4 4 ASP A 268 ? ILE A 272 ? ASP A 268 ILE A 272 5 ? 5 HELX_P HELX_P5 5 GLN A 273 ? ALA A 293 ? GLN A 273 ALA A 293 1 ? 21 HELX_P HELX_P6 6 SER A 298 ? TYR A 304 ? SER A 298 TYR A 304 1 ? 7 HELX_P HELX_P7 7 PRO A 370 ? GLY A 372 ? PRO A 370 GLY A 372 5 ? 3 HELX_P HELX_P8 8 PHE A 382 ? ILE A 387 ? PHE A 382 ILE A 387 1 ? 6 HELX_P HELX_P9 9 HIS A 407 ? ASP A 412 ? HIS A 407 ASP A 412 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 284 SG ? ? A CYS 24 A CYS 284 1_555 ? ? ? ? ? ? ? 2.037 ? disulf2 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 59 A CYS 92 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 68 SG ? ? ? 1_555 A CYS 114 SG ? ? A CYS 68 A CYS 114 1_555 ? ? ? ? ? ? ? 2.043 ? disulf4 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 153 A CYS 158 1_555 ? ? ? ? ? ? ? 2.048 ? disulf5 disulf ? ? A CYS 177 SG ? ? ? 1_555 A CYS 224 SG ? ? A CYS 177 A CYS 224 1_555 ? ? ? ? ? ? ? 2.036 ? disulf6 disulf ? ? A CYS 219 SG ? ? ? 1_555 A CYS 253 SG ? ? A CYS 219 A CYS 253 1_555 ? ? ? ? ? ? ? 2.046 ? covale1 covale ? ? A ASN 163 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 163 A NAG 1414 1_555 ? ? ? ? ? ? ? 1.437 ? covale2 covale ? ? A ASN 320 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 320 A NAG 1416 1_555 ? ? ? ? ? ? ? 1.466 ? covale3 covale ? ? B NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? A NAG 1414 A NAG 1415 1_555 ? ? ? ? ? ? ? 1.441 ? metalc1 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE1 ? ? A YB 1417 A GLU 286 3_565 ? ? ? ? ? ? ? 2.937 ? metalc2 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE1 ? ? A YB 1417 A GLU 286 2_665 ? ? ? ? ? ? ? 2.921 ? metalc3 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE2 ? ? A YB 1417 A GLU 286 1_555 ? ? ? ? ? ? ? 2.246 ? metalc4 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE2 ? ? A YB 1417 A GLU 286 2_665 ? ? ? ? ? ? ? 2.236 ? metalc5 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE2 ? ? A YB 1417 A GLU 286 3_565 ? ? ? ? ? ? ? 2.254 ? metalc6 metalc ? ? E YB . YB ? ? ? 1_555 A GLU 286 OE1 ? ? A YB 1417 A GLU 286 1_555 ? ? ? ? ? ? ? 2.918 ? metalc7 metalc ? ? F YB . YB ? ? ? 1_555 A GLU 191 OE1 ? ? A YB 1418 A GLU 191 1_555 ? ? ? ? ? ? ? 2.637 ? metalc8 metalc ? ? F YB . YB ? ? ? 1_555 A GLU 191 OE1 ? ? A YB 1418 A GLU 191 12_566 ? ? ? ? ? ? ? 2.949 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 3 ? AC ? 7 ? AD ? 4 ? AE ? 4 ? AF ? 3 ? AG ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AC 5 6 ? anti-parallel AC 6 7 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AG 1 2 ? anti-parallel AG 2 3 ? anti-parallel AG 3 4 ? anti-parallel AG 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 2 ? PRO A 7 ? PHE A 2 PRO A 7 AA 2 THR A 322 ? ILE A 335 ? THR A 322 ILE A 335 AA 3 LYS A 15 ? ASN A 16 ? LYS A 15 ASN A 16 AB 1 PHE A 2 ? PRO A 7 ? PHE A 2 PRO A 7 AB 2 THR A 322 ? ILE A 335 ? THR A 322 ILE A 335 AB 3 GLY A 311 ? ILE A 319 ? GLY A 311 ILE A 319 AC 1 PHE A 210 ? GLU A 213 ? PHE A 210 GLU A 213 AC 2 GLY A 204 ? SER A 207 ? GLY A 204 SER A 207 AC 3 ILE A 182 ? PHE A 189 ? ILE A 182 PHE A 189 AC 4 ALA A 40 ? MET A 45 ? ALA A 40 MET A 45 AC 5 TRP A 236 ? MET A 239 ? TRP A 236 MET A 239 AC 6 HIS A 226 ? ARG A 230 ? HIS A 226 ARG A 230 AC 7 CYS A 219 ? TYR A 223 ? CYS A 219 TYR A 223 AD 1 GLN A 53 ? ALA A 54 ? GLN A 53 ALA A 54 AD 2 VAL A 134 ? VAL A 136 ? VAL A 134 VAL A 136 AD 3 TRP A 143 ? VAL A 144 ? TRP A 143 VAL A 144 AD 4 LYS A 152 ? CYS A 153 ? LYS A 152 CYS A 153 AE 1 LYS A 76 ? PHE A 85 ? LYS A 76 PHE A 85 AE 2 GLY A 56 ? PHE A 70 ? GLY A 56 PHE A 70 AE 3 THR A 166 ? SER A 169 ? THR A 166 SER A 169 AE 4 ILE A 157 ? PRO A 159 ? ILE A 157 PRO A 159 AF 1 LYS A 76 ? PHE A 85 ? LYS A 76 PHE A 85 AF 2 GLY A 56 ? PHE A 70 ? GLY A 56 PHE A 70 AF 3 VAL A 119 ? PRO A 131 ? VAL A 119 PRO A 131 AG 1 ILE A 339 ? LEU A 340 ? ILE A 339 LEU A 340 AG 2 GLY A 379 ? LYS A 381 ? GLY A 379 LYS A 381 AG 3 LEU A 374 ? THR A 376 ? LEU A 374 THR A 376 AG 4 VAL A 366 ? ILE A 368 ? VAL A 366 ILE A 368 AG 5 ALA A 361 ? TYR A 363 ? ALA A 361 TYR A 363 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 6 ? N PHE A 6 O ILE A 331 ? O ILE A 331 AA 2 3 N TYR A 325 ? N TYR A 325 O LYS A 15 ? O LYS A 15 AB 1 2 N PHE A 6 ? N PHE A 6 O ILE A 331 ? O ILE A 331 AB 2 3 N TYR A 330 ? N TYR A 330 O GLY A 311 ? O GLY A 311 AC 1 2 N GLU A 213 ? N GLU A 213 O PHE A 205 ? O PHE A 205 AC 2 3 N ARG A 206 ? N ARG A 206 O THR A 187 ? O THR A 187 AC 3 4 N ILE A 186 ? N ILE A 186 O ILE A 41 ? O ILE A 41 AC 4 5 N LYS A 44 ? N LYS A 44 O GLU A 238 ? O GLU A 238 AC 5 6 N PHE A 237 ? N PHE A 237 O VAL A 229 ? O VAL A 229 AC 6 7 N ARG A 230 ? N ARG A 230 O CYS A 219 ? O CYS A 219 AD 1 2 N ALA A 54 ? N ALA A 54 O VAL A 134 ? O VAL A 134 AD 2 3 N LEU A 135 ? N LEU A 135 O VAL A 144 ? O VAL A 144 AD 3 4 N TRP A 143 ? N TRP A 143 O CYS A 153 ? O CYS A 153 AE 1 2 N PHE A 85 ? N PHE A 85 O ALA A 61 ? O ALA A 61 AE 2 3 N CYS A 59 ? N CYS A 59 O THR A 166 ? O THR A 166 AE 3 4 N TRP A 167 ? N TRP A 167 O CYS A 158 ? O CYS A 158 AF 1 2 N PHE A 85 ? N PHE A 85 O ALA A 61 ? O ALA A 61 AF 2 3 N CYS A 68 ? N CYS A 68 O THR A 120 ? O THR A 120 AG 1 2 N LEU A 340 ? N LEU A 340 O TYR A 380 ? O TYR A 380 AG 2 3 N LYS A 381 ? N LYS A 381 O LEU A 374 ? O LEU A 374 AG 3 4 N ARG A 375 ? N ARG A 375 O GLU A 367 ? O GLU A 367 AG 4 5 N ILE A 368 ? N ILE A 368 O ALA A 361 ? O ALA A 361 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NAG A1416' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE YB A1417' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE YB A1418' AC4 Software ? ? ? ? 1 'BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 163 RESIDUES 1414 TO 1415' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ASN A 320 ? ASN A 320 . ? 1_555 ? 2 AC2 1 GLU A 286 ? GLU A 286 . ? 1_555 ? 3 AC3 1 GLU A 191 ? GLU A 191 . ? 1_555 ? 4 AC4 1 ASN A 163 ? ASN A 163 . ? 1_555 ? # _database_PDB_matrix.entry_id 2J6J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2J6J _atom_sites.fract_transf_matrix[1][1] 0.008298 _atom_sites.fract_transf_matrix[1][2] 0.004791 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009582 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S YB # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 CYS 114 114 114 CYS CYS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 TRP 143 143 143 TRP TRP A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 CYS 158 158 158 CYS CYS A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 HIS 162 162 162 HIS HIS A . n A 1 163 ASN 163 163 163 ASN ASN A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 TRP 167 167 167 TRP TRP A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 CYS 177 177 177 CYS CYS A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 SER 179 179 179 SER SER A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 PHE 188 188 188 PHE PHE A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ASN 208 208 208 ASN ASN A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 CYS 219 219 219 CYS CYS A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 GLN 222 222 222 GLN GLN A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 CYS 224 224 224 CYS CYS A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 HIS 226 226 226 HIS HIS A . n A 1 227 TRP 227 227 227 TRP TRP A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 SER 233 233 233 SER SER A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 TRP 236 236 236 TRP TRP A . n A 1 237 PHE 237 237 237 PHE PHE A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 MET 239 239 239 MET MET A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 GLU 252 252 252 GLU GLU A . n A 1 253 CYS 253 253 253 CYS CYS A . n A 1 254 PRO 254 254 254 PRO PRO A . n A 1 255 GLU 255 255 255 GLU GLU A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 SER 258 258 258 SER SER A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 SER 260 260 260 SER SER A . n A 1 261 ALA 261 261 261 ALA ALA A . n A 1 262 PRO 262 262 262 PRO PRO A . n A 1 263 SER 263 263 263 SER SER A . n A 1 264 GLN 264 264 264 GLN GLN A . n A 1 265 THR 265 265 265 THR THR A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 VAL 267 267 267 VAL VAL A . n A 1 268 ASP 268 268 268 ASP ASP A . n A 1 269 VAL 269 269 269 VAL VAL A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 ILE 272 272 272 ILE ILE A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 ASP 274 274 274 ASP ASP A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 GLU 276 276 276 GLU GLU A . n A 1 277 ARG 277 277 277 ARG ARG A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 LEU 279 279 279 LEU LEU A . n A 1 280 ASP 280 280 280 ASP ASP A . n A 1 281 TYR 281 281 281 TYR TYR A . n A 1 282 SER 282 282 282 SER SER A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 CYS 284 284 284 CYS CYS A . n A 1 285 GLN 285 285 285 GLN GLN A . n A 1 286 GLU 286 286 286 GLU GLU A . n A 1 287 THR 287 287 287 THR THR A . n A 1 288 TRP 288 288 288 TRP TRP A . n A 1 289 SER 289 289 289 SER SER A . n A 1 290 LYS 290 290 290 LYS LYS A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 ARG 292 292 292 ARG ARG A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 GLY 294 294 294 GLY GLY A . n A 1 295 LEU 295 295 295 LEU LEU A . n A 1 296 PRO 296 296 296 PRO PRO A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 PRO 299 299 299 PRO PRO A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 ASP 301 301 301 ASP ASP A . n A 1 302 LEU 302 302 302 LEU LEU A . n A 1 303 SER 303 303 303 SER SER A . n A 1 304 TYR 304 304 304 TYR TYR A . n A 1 305 LEU 305 305 305 LEU LEU A . n A 1 306 ALA 306 306 306 ALA ALA A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 LYS 308 308 308 LYS LYS A . n A 1 309 ASN 309 309 309 ASN ASN A . n A 1 310 PRO 310 310 310 PRO PRO A . n A 1 311 GLY 311 311 311 GLY GLY A . n A 1 312 THR 312 312 312 THR THR A . n A 1 313 GLY 313 313 313 GLY GLY A . n A 1 314 PRO 314 314 314 PRO PRO A . n A 1 315 ALA 315 315 315 ALA ALA A . n A 1 316 PHE 316 316 316 PHE PHE A . n A 1 317 THR 317 317 317 THR THR A . n A 1 318 ILE 318 318 318 ILE ILE A . n A 1 319 ILE 319 319 319 ILE ILE A . n A 1 320 ASN 320 320 320 ASN ASN A . n A 1 321 GLY 321 321 321 GLY GLY A . n A 1 322 THR 322 322 322 THR THR A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 LYS 324 324 324 LYS LYS A . n A 1 325 TYR 325 325 325 TYR TYR A . n A 1 326 PHE 326 326 326 PHE PHE A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 THR 328 328 328 THR THR A . n A 1 329 ARG 329 329 329 ARG ARG A . n A 1 330 TYR 330 330 330 TYR TYR A . n A 1 331 ILE 331 331 331 ILE ILE A . n A 1 332 ARG 332 332 332 ARG ARG A . n A 1 333 VAL 333 333 333 VAL VAL A . n A 1 334 ASP 334 334 334 ASP ASP A . n A 1 335 ILE 335 335 335 ILE ILE A . n A 1 336 ALA 336 336 336 ALA ALA A . n A 1 337 ALA 337 337 337 ALA ALA A . n A 1 338 PRO 338 338 338 PRO PRO A . n A 1 339 ILE 339 339 339 ILE ILE A . n A 1 340 LEU 340 340 340 LEU LEU A . n A 1 341 SER 341 341 341 SER SER A . n A 1 342 ARG 342 342 342 ARG ARG A . n A 1 343 MET 343 343 343 MET MET A . n A 1 344 VAL 344 344 344 VAL VAL A . n A 1 345 GLY 345 345 345 GLY GLY A . n A 1 346 MET 346 346 346 MET MET A . n A 1 347 ILE 347 347 347 ILE ILE A . n A 1 348 SER 348 348 348 SER SER A . n A 1 349 GLY 349 349 349 GLY GLY A . n A 1 350 THR 350 350 350 THR THR A . n A 1 351 THR 351 351 351 THR THR A . n A 1 352 THR 352 352 352 THR THR A . n A 1 353 GLU 353 353 353 GLU GLU A . n A 1 354 ARG 354 354 354 ARG ARG A . n A 1 355 GLU 355 355 355 GLU GLU A . n A 1 356 LEU 356 356 356 LEU LEU A . n A 1 357 TRP 357 357 357 TRP TRP A . n A 1 358 ASP 358 358 358 ASP ASP A . n A 1 359 ASP 359 359 359 ASP ASP A . n A 1 360 TRP 360 360 360 TRP TRP A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 PRO 362 362 362 PRO PRO A . n A 1 363 TYR 363 363 363 TYR TYR A . n A 1 364 GLU 364 364 364 GLU GLU A . n A 1 365 ASP 365 365 365 ASP ASP A . n A 1 366 VAL 366 366 366 VAL VAL A . n A 1 367 GLU 367 367 367 GLU GLU A . n A 1 368 ILE 368 368 368 ILE ILE A . n A 1 369 GLY 369 369 369 GLY GLY A . n A 1 370 PRO 370 370 370 PRO PRO A . n A 1 371 ASN 371 371 371 ASN ASN A . n A 1 372 GLY 372 372 372 GLY GLY A . n A 1 373 VAL 373 373 373 VAL VAL A . n A 1 374 LEU 374 374 374 LEU LEU A . n A 1 375 ARG 375 375 375 ARG ARG A . n A 1 376 THR 376 376 376 THR THR A . n A 1 377 SER 377 377 377 SER SER A . n A 1 378 SER 378 378 378 SER SER A . n A 1 379 GLY 379 379 379 GLY GLY A . n A 1 380 TYR 380 380 380 TYR TYR A . n A 1 381 LYS 381 381 381 LYS LYS A . n A 1 382 PHE 382 382 382 PHE PHE A . n A 1 383 PRO 383 383 383 PRO PRO A . n A 1 384 LEU 384 384 384 LEU LEU A . n A 1 385 TYR 385 385 385 TYR TYR A . n A 1 386 MET 386 386 386 MET MET A . n A 1 387 ILE 387 387 387 ILE ILE A . n A 1 388 GLY 388 388 388 GLY GLY A . n A 1 389 HIS 389 389 389 HIS HIS A . n A 1 390 GLY 390 390 390 GLY GLY A . n A 1 391 MET 391 391 391 MET MET A . n A 1 392 LEU 392 392 392 LEU LEU A . n A 1 393 ASP 393 393 393 ASP ASP A . n A 1 394 SER 394 394 394 SER SER A . n A 1 395 ASP 395 395 395 ASP ASP A . n A 1 396 LEU 396 396 396 LEU LEU A . n A 1 397 HIS 397 397 397 HIS HIS A . n A 1 398 LEU 398 398 398 LEU LEU A . n A 1 399 SER 399 399 399 SER SER A . n A 1 400 SER 400 400 400 SER SER A . n A 1 401 LYS 401 401 401 LYS LYS A . n A 1 402 ALA 402 402 402 ALA ALA A . n A 1 403 GLN 403 403 403 GLN GLN A . n A 1 404 VAL 404 404 404 VAL VAL A . n A 1 405 PHE 405 405 405 PHE PHE A . n A 1 406 GLU 406 406 406 GLU GLU A . n A 1 407 HIS 407 407 407 HIS HIS A . n A 1 408 PRO 408 408 408 PRO PRO A . n A 1 409 HIS 409 409 409 HIS HIS A . n A 1 410 ILE 410 410 410 ILE ILE A . n A 1 411 GLN 411 411 411 GLN GLN A . n A 1 412 ASP 412 412 412 ASP ASP A . n A 1 413 ALA 413 413 413 ALA ALA A . n A 1 414 ALA 414 414 ? ? ? A . n A 1 415 SER 415 415 ? ? ? A . n A 1 416 GLN 416 416 ? ? ? A . n A 1 417 LEU 417 417 ? ? ? A . n A 1 418 PRO 418 418 ? ? ? A . n A 1 419 ASP 419 419 ? ? ? A . n A 1 420 ASP 420 420 ? ? ? A . n A 1 421 GLU 421 421 ? ? ? A . n A 1 422 SER 422 422 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 1414 1414 NAG NAG A . C 2 NAG 2 1415 1415 NAG NAG A . D 2 NAG 1 1416 1416 NAG NAG A . E 3 YB 1 1417 1417 YB YB A . F 3 YB 1 1418 1418 YB YB A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 163 A ASN 163 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 320 A ASN 320 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6480 ? 1 MORE -25.8 ? 1 'SSA (A^2)' 56650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -60.2550000000 -0.8660254038 -0.5000000000 0.0000000000 104.3647214101 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 60.2550000000 0.8660254038 -0.5000000000 0.0000000000 104.3647214101 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id YB _pdbx_struct_special_symmetry.auth_seq_id 1417 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id YB _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 2_665 119.1 ? 2 OE1 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 1_555 83.5 ? 3 OE1 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 1_555 151.6 ? 4 OE1 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 2_665 151.0 ? 5 OE1 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 2_665 48.3 ? 6 OE2 ? A GLU 286 ? A GLU 286 ? 1_555 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 2_665 103.5 ? 7 OE1 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 3_565 48.0 ? 8 OE1 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 3_565 83.8 ? 9 OE2 ? A GLU 286 ? A GLU 286 ? 1_555 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 3_565 102.9 ? 10 OE2 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE2 ? A GLU 286 ? A GLU 286 ? 3_565 103.3 ? 11 OE1 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 1_555 119.2 ? 12 OE1 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 1_555 119.8 ? 13 OE2 ? A GLU 286 ? A GLU 286 ? 1_555 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 1_555 48.3 ? 14 OE2 ? A GLU 286 ? A GLU 286 ? 2_665 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 1_555 84.1 ? 15 OE2 ? A GLU 286 ? A GLU 286 ? 3_565 YB ? E YB . ? A YB 1417 ? 1_555 OE1 ? A GLU 286 ? A GLU 286 ? 1_555 151.1 ? 16 OE1 ? A GLU 191 ? A GLU 191 ? 1_555 YB ? F YB . ? A YB 1418 ? 1_555 OE1 ? A GLU 191 ? A GLU 191 ? 12_566 138.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-03-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.5220 45.0560 58.9570 -0.2065 -0.2535 -0.0574 0.0215 0.0617 -0.0042 8.3644 2.4969 2.2589 0.4340 0.0434 -1.7365 -0.1795 -0.1481 -0.9513 -0.1490 0.0739 -0.2547 0.3937 0.3157 0.1056 'X-RAY DIFFRACTION' 2 ? refined -13.8040 46.2380 83.4450 -0.2318 -0.0336 -0.2400 -0.0063 0.0403 0.0841 6.9669 3.9215 4.7886 2.9311 -1.5156 -0.5497 0.0600 -0.3458 -0.0650 0.1206 -0.1968 0.0838 -0.0092 0.0510 0.1367 'X-RAY DIFFRACTION' 3 ? refined -18.5070 41.5350 53.8210 -0.2752 -0.1954 -0.0194 -0.0588 0.1659 -0.0615 5.3115 3.0613 16.3958 0.8164 2.0558 2.6920 -0.1465 0.4304 -0.1156 -0.1920 0.1201 -0.2360 0.1108 -0.6699 0.0264 'X-RAY DIFFRACTION' 4 ? refined -20.5850 41.9350 26.3730 0.8278 0.8555 0.1364 -0.0347 0.0735 -0.1886 2.7695 3.3206 16.4596 -1.1387 1.0138 -4.7562 0.2405 1.3267 0.1986 -1.8580 -0.3152 0.2564 0.2657 -0.6856 0.0748 'X-RAY DIFFRACTION' 5 ? refined -4.1960 59.2490 54.7210 -0.2576 -0.1723 -0.2184 0.0229 0.0245 -0.0250 4.6309 4.4556 1.5791 0.5736 -2.6122 -0.3281 -0.2369 0.3096 0.0153 -0.3036 -0.0257 0.1810 -0.2653 -0.0075 0.2627 'X-RAY DIFFRACTION' 6 ? refined -10.5030 34.3780 67.4980 0.4790 0.1104 0.2411 0.0818 0.0488 0.1681 10.4005 31.6853 0.0000 9.0721 7.0820 0.0000 1.8714 -0.1090 -2.7519 2.3435 -0.4167 0.1112 2.3020 4.0302 -1.4548 'X-RAY DIFFRACTION' 7 ? refined -18.3310 29.2830 70.4510 0.8682 0.2711 0.8408 -0.1229 -0.1230 -0.1325 0.0001 0.1427 11.8977 0.0039 0.0359 1.3029 0.6546 0.7370 -2.8995 -0.6467 -0.4854 0.3820 2.5761 0.3221 -0.1691 'X-RAY DIFFRACTION' 8 ? refined -12.5530 54.8500 70.0950 -0.0907 -0.1738 -0.1459 0.0778 0.0310 -0.0111 4.0441 0.0032 5.3261 0.0323 4.5601 0.0598 0.3984 -0.5032 -0.0470 -0.1093 -0.6037 0.1959 -0.1201 0.1202 0.2052 'X-RAY DIFFRACTION' 9 ? refined -3.2140 58.5620 75.2850 -0.2028 -0.0501 -0.1837 -0.1074 0.0838 -0.0856 4.7918 5.1914 21.5596 -0.9969 -3.5976 -8.9465 0.4242 -0.3171 1.0690 0.4128 -0.7068 -0.8807 -0.1478 1.0769 0.2827 'X-RAY DIFFRACTION' 10 ? refined 8.6100 56.8130 52.2240 -0.1841 -0.1444 -0.0451 0.0617 -0.0051 0.0209 9.9677 2.5921 4.6059 3.2529 3.5724 3.3429 -0.2631 0.6874 -0.1558 -0.2444 0.2044 0.0845 0.1856 0.1191 0.0588 'X-RAY DIFFRACTION' 11 ? refined -11.4980 47.0770 36.3190 0.9054 0.9646 0.2623 -0.2065 -0.3062 0.2394 46.4202 98.1051 0.0000 62.6625 0.0000 0.0000 -0.4319 -2.4902 -2.8498 -1.6643 0.0728 -0.2232 -1.2136 -0.0320 0.3591 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 17 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 310 ? ? A 382 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 1416 ? ? A 1416 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 A 36 ? ? A 46 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 A 181 ? ? A 258 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 A 1418 ? ? A 1418 ? ? ? ? 'X-RAY DIFFRACTION' 7 3 A 53 ? ? A 59 ? ? ? ? 'X-RAY DIFFRACTION' 8 3 A 130 ? ? A 172 ? ? ? ? 'X-RAY DIFFRACTION' 9 3 A 1414 ? ? A 1415 ? ? ? ? 'X-RAY DIFFRACTION' 10 4 A 60 ? ? A 129 ? ? ? ? 'X-RAY DIFFRACTION' 11 5 A 18 ? ? A 25 ? ? ? ? 'X-RAY DIFFRACTION' 12 5 A 274 ? ? A 309 ? ? ? ? 'X-RAY DIFFRACTION' 13 5 A 1417 ? ? A 1417 ? ? ? ? 'X-RAY DIFFRACTION' 14 6 A 47 ? ? A 52 ? ? ? ? 'X-RAY DIFFRACTION' 15 7 A 173 ? ? A 180 ? ? ? ? 'X-RAY DIFFRACTION' 16 8 A 259 ? ? A 273 ? ? ? ? 'X-RAY DIFFRACTION' 17 9 A 26 ? ? A 35 ? ? ? ? 'X-RAY DIFFRACTION' 18 10 A 383 ? ? A 405 ? ? ? ? 'X-RAY DIFFRACTION' 19 11 A 406 ? ? A 413 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 13 ? ? -116.47 70.16 2 1 ASN A 34 ? ? 58.21 -122.02 3 1 PRO A 75 ? ? -38.71 126.31 4 1 PRO A 107 ? ? -67.87 13.93 5 1 ASN A 150 ? ? 56.43 8.68 6 1 LYS A 174 ? ? -63.25 -172.17 7 1 MET A 184 ? ? 178.85 157.66 8 1 ASN A 208 ? ? -68.63 2.13 9 1 LYS A 225 ? ? 73.58 -8.14 10 1 PRO A 254 ? ? -46.10 158.30 11 1 ASN A 320 ? ? 46.66 -116.94 12 1 TRP A 357 ? ? -170.16 137.28 13 1 ASP A 358 ? ? -142.94 43.32 14 1 GLU A 364 ? ? 46.28 71.96 15 1 ASP A 365 ? ? 49.74 21.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 414 ? A ALA 414 2 1 Y 1 A SER 415 ? A SER 415 3 1 Y 1 A GLN 416 ? A GLN 416 4 1 Y 1 A LEU 417 ? A LEU 417 5 1 Y 1 A PRO 418 ? A PRO 418 6 1 Y 1 A ASP 419 ? A ASP 419 7 1 Y 1 A ASP 420 ? A ASP 420 8 1 Y 1 A GLU 421 ? A GLU 421 9 1 Y 1 A SER 422 ? A SER 422 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-ACETYL-D-GLUCOSAMINE NAG 3 'YTTERBIUM (III) ION' YB #