HEADER LYASE 04-OCT-06 2J6V TITLE CRYSTAL STRUCTURE OF THE DNA REPAIR ENZYME UV DAMAGE ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV ENDONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UVDE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PETUVDE; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUB24 KEYWDS UVDE, PLASMID, TIM BARREL, DNA REPAIR, ENDONUCLEASE, DNA BINDING KEYWDS 2 PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PASPALEVA,E.A.J.THOMASSEN,N.S.PANNU,N.GOOSSEN,J.P.ABRAHAMS REVDAT 4 28-JUN-17 2J6V 1 REMARK REVDAT 3 24-FEB-09 2J6V 1 VERSN REVDAT 2 30-OCT-07 2J6V 1 JRNL REVDAT 1 16-OCT-07 2J6V 0 JRNL AUTH K.PASPALEVA,E.A.J.THOMASSEN,N.S.PANNU,S.IWAI,G.F.MOOLENAAR, JRNL AUTH 2 N.GOOSEN,J.P.ABRAHAMS JRNL TITL CRYSTAL STRUCTURE OF THE DNA REPAIR ENZYME ULTRAVIOLET JRNL TITL 2 DAMAGE ENDONUCLEASE. JRNL REF STRUCTURE V. 15 1316 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17937920 JRNL DOI 10.1016/J.STR.2007.05.010 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 73.8 REMARK 3 NUMBER OF REFLECTIONS : 53443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2860 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.01 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1053 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 66 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 2.26000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.56000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 1.72 ; 10.00 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.THE RESIDUES 136 AND 137 IN BOTH CHAIN A AND B ARE REMARK 3 DISORDERED. THE HIS-TAG, 10AA AND THE LINKER 9AA, ARE DISORDERED REMARK 3 AS ARE THE RESIDUES 278-280. REMARK 4 REMARK 4 2J6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800,0.97850,0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 23.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AFRO, CRUNCH2, BP3, ARP/WARP, REFMAC REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 X PHOSPHATE BUFFERED SALINE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 THR A 279 REMARK 465 PRO A 280 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 0 REMARK 465 THR B 279 REMARK 465 PRO B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 278 CA C O CB REMARK 470 ALA B 278 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 22 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -44.98 82.52 REMARK 500 LYS A 239 -169.12 -100.18 REMARK 500 LYS A 273 -122.36 54.19 REMARK 500 CYS B 8 -41.13 80.35 REMARK 500 LEU B 26 41.16 -69.14 REMARK 500 LYS B 273 -121.72 53.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1278 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 ND1 REMARK 620 2 GLU A 269 OE1 86.6 REMARK 620 3 PO4 A1281 O3 158.4 81.3 REMARK 620 4 PO4 A1281 O1 99.7 91.0 63.0 REMARK 620 5 ASP A 200 OD2 108.9 87.1 88.4 151.2 REMARK 620 6 GLU A 175 OE2 88.3 173.6 104.7 93.7 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1279 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 PO4 A1281 O1 98.4 REMARK 620 3 HIS A 143 NE2 134.5 124.6 REMARK 620 4 GLU A 175 OE1 83.9 95.9 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1280 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2184 O REMARK 620 2 PO4 A1281 O3 93.9 REMARK 620 3 HIS A 203 NE2 82.1 100.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1278 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 269 OE1 REMARK 620 2 HIS B 231 ND1 86.9 REMARK 620 3 ASP B 200 OD2 92.5 110.7 REMARK 620 4 PO4 B1281 O3 78.5 155.2 90.0 REMARK 620 5 GLU B 175 OE2 175.4 89.0 90.9 104.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1279 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B1281 O4 REMARK 620 2 GLU B 175 OE1 100.9 REMARK 620 3 HIS B 143 NE2 135.9 106.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1280 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 244 NE2 REMARK 620 2 HOH B2172 O 80.4 REMARK 620 3 PO4 B1281 O3 98.5 97.2 REMARK 620 4 HIS B 203 NE2 160.5 83.8 94.8 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1281 DBREF 2J6V A -20 0 PDB 2J6V 2J6V -20 0 DBREF 2J6V A 1 280 UNP Q746K1 Q746K1_THET2 1 280 DBREF 2J6V B -20 0 PDB 2J6V 2J6V -20 0 DBREF 2J6V B 1 280 UNP Q746K1 Q746K1_THET2 1 280 SEQADV 2J6V KCX A 229 UNP Q746K1 LYS 229 MICROHETEROGENEITY SEQADV 2J6V KCX B 229 UNP Q746K1 LYS 229 MICROHETEROGENEITY SEQRES 1 A 301 MSE GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 301 SER GLY HIS ILE GLU GLY ARG HIS MSE ILE ARG LEU GLY SEQRES 3 A 301 TYR PRO CYS GLU ASN LEU THR LEU GLY ALA THR THR ASN SEQRES 4 A 301 ARG THR LEU ARG LEU ALA HIS LEU THR GLU GLU ARG VAL SEQRES 5 A 301 ARG GLU LYS ALA ALA GLU ASN LEU ARG ASP LEU GLU ARG SEQRES 6 A 301 ILE LEU ARG PHE ASN ALA ASP HIS GLY PHE ALA LEU PHE SEQRES 7 A 301 ARG ILE GLY GLN HIS LEU ILE PRO PHE ALA SER HIS PRO SEQRES 8 A 301 LEU PHE PRO TYR ASP TRP GLU GLY ALA TYR GLU GLU GLU SEQRES 9 A 301 LEU ALA ARG LEU GLY ALA LEU ALA ARG ALA PHE GLY GLN SEQRES 10 A 301 ARG LEU SER MSE HIS PRO GLY GLN TYR VAL ASN PRO GLY SEQRES 11 A 301 SER PRO ASP PRO GLU VAL VAL GLU ARG SER LEU ALA GLU SEQRES 12 A 301 LEU ARG TYR SER ALA ARG LEU LEU SER LEU LEU GLY ALA SEQRES 13 A 301 GLU ASP GLY VAL LEU VAL LEU HIS LEU GLY GLY ALA TYR SEQRES 14 A 301 GLY GLU LYS GLY LYS ALA LEU ARG ARG PHE VAL GLU ASN SEQRES 15 A 301 LEU ARG GLY GLU GLU GLU VAL LEU ARG TYR LEU ALA LEU SEQRES 16 A 301 GLU ASN ASP GLU ARG LEU TRP ASN VAL GLU GLU VAL LEU SEQRES 17 A 301 LYS ALA ALA GLU ALA LEU GLY VAL PRO VAL VAL VAL ASP SEQRES 18 A 301 THR LEU HIS HIS ALA LEU ASN PRO GLY ARG LEU PRO LEU SEQRES 19 A 301 GLU GLU ALA LEU ARG LEU ALA PHE PRO THR TRP ARG GLY SEQRES 20 A 301 ARG PRO ALY VAL HIS LEU ALA SER GLN ASP PRO LYS LYS SEQRES 21 A 301 ARG PRO GLY ALA HIS ALA PHE ARG VAL THR ARG GLU ASP SEQRES 22 A 301 TRP GLU ARG LEU LEU SER ALA LEU PRO GLY PRO ALA ASP SEQRES 23 A 301 VAL MSE VAL GLU ALA LYS GLY LYS GLU GLN GLY LEU ALA SEQRES 24 A 301 THR PRO SEQRES 1 B 301 MSE GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 301 SER GLY HIS ILE GLU GLY ARG HIS MSE ILE ARG LEU GLY SEQRES 3 B 301 TYR PRO CYS GLU ASN LEU THR LEU GLY ALA THR THR ASN SEQRES 4 B 301 ARG THR LEU ARG LEU ALA HIS LEU THR GLU GLU ARG VAL SEQRES 5 B 301 ARG GLU LYS ALA ALA GLU ASN LEU ARG ASP LEU GLU ARG SEQRES 6 B 301 ILE LEU ARG PHE ASN ALA ASP HIS GLY PHE ALA LEU PHE SEQRES 7 B 301 ARG ILE GLY GLN HIS LEU ILE PRO PHE ALA SER HIS PRO SEQRES 8 B 301 LEU PHE PRO TYR ASP TRP GLU GLY ALA TYR GLU GLU GLU SEQRES 9 B 301 LEU ALA ARG LEU GLY ALA LEU ALA ARG ALA PHE GLY GLN SEQRES 10 B 301 ARG LEU SER MSE HIS PRO GLY GLN TYR VAL ASN PRO GLY SEQRES 11 B 301 SER PRO ASP PRO GLU VAL VAL GLU ARG SER LEU ALA GLU SEQRES 12 B 301 LEU ARG TYR SER ALA ARG LEU LEU SER LEU LEU GLY ALA SEQRES 13 B 301 GLU ASP GLY VAL LEU VAL LEU HIS LEU GLY GLY ALA TYR SEQRES 14 B 301 GLY GLU LYS GLY LYS ALA LEU ARG ARG PHE VAL GLU ASN SEQRES 15 B 301 LEU ARG GLY GLU GLU GLU VAL LEU ARG TYR LEU ALA LEU SEQRES 16 B 301 GLU ASN ASP GLU ARG LEU TRP ASN VAL GLU GLU VAL LEU SEQRES 17 B 301 LYS ALA ALA GLU ALA LEU GLY VAL PRO VAL VAL VAL ASP SEQRES 18 B 301 THR LEU HIS HIS ALA LEU ASN PRO GLY ARG LEU PRO LEU SEQRES 19 B 301 GLU GLU ALA LEU ARG LEU ALA PHE PRO THR TRP ARG GLY SEQRES 20 B 301 ARG PRO ALY VAL HIS LEU ALA SER GLN ASP PRO LYS LYS SEQRES 21 B 301 ARG PRO GLY ALA HIS ALA PHE ARG VAL THR ARG GLU ASP SEQRES 22 B 301 TRP GLU ARG LEU LEU SER ALA LEU PRO GLY PRO ALA ASP SEQRES 23 B 301 VAL MSE VAL GLU ALA LYS GLY LYS GLU GLN GLY LEU ALA SEQRES 24 B 301 THR PRO MODRES 2J6V MSE A 1 MET SELENOMETHIONINE MODRES 2J6V MSE A 100 MET SELENOMETHIONINE MODRES 2J6V ALY A 229 LYS N(6)-ACETYLLYSINE MODRES 2J6V KCX A 229 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 2J6V MSE A 267 MET SELENOMETHIONINE MODRES 2J6V MSE B 1 MET SELENOMETHIONINE MODRES 2J6V MSE B 100 MET SELENOMETHIONINE MODRES 2J6V ALY B 229 LYS N(6)-ACETYLLYSINE MODRES 2J6V KCX B 229 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 2J6V MSE B 267 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 100 8 HET ALY A 229 12 HET KCX A 229 12 HET MSE A 267 8 HET MSE B 1 8 HET MSE B 100 8 HET ALY B 229 12 HET KCX B 229 12 HET MSE B 267 8 HET MN A1278 1 HET MN A1279 1 HET MN A1280 1 HET PO4 A1281 5 HET MN B1278 1 HET MN B1279 1 HET MN B1280 1 HET PO4 B1281 5 HETNAM MSE SELENOMETHIONINE HETNAM ALY N(6)-ACETYLLYSINE HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 ALY 2(C8 H16 N2 O3) FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 MN 6(MN 2+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 11 HOH *356(H2 O) HELIX 1 1 ARG A 22 LEU A 26 5 5 HELIX 2 2 THR A 27 GLY A 53 1 27 HELIX 3 3 GLY A 60 ILE A 64 5 5 HELIX 4 4 ASP A 75 PHE A 94 1 20 HELIX 5 5 ASP A 112 LEU A 133 1 22 HELIX 6 6 GLU A 150 ARG A 163 1 14 HELIX 7 7 GLU A 165 TYR A 171 1 7 HELIX 8 8 ASN A 182 GLY A 194 1 13 HELIX 9 9 ASP A 200 ASN A 207 1 8 HELIX 10 10 PRO A 212 PHE A 221 1 10 HELIX 11 11 PRO A 222 TRP A 224 5 3 HELIX 12 12 THR A 249 LEU A 260 1 12 HELIX 13 13 GLY A 272 GLY A 276 5 5 HELIX 14 14 ARG B 22 LEU B 26 5 5 HELIX 15 15 THR B 27 GLY B 53 1 27 HELIX 16 16 GLY B 60 ILE B 64 5 5 HELIX 17 17 ASP B 75 PHE B 94 1 20 HELIX 18 18 ASP B 112 LEU B 133 1 22 HELIX 19 19 GLU B 150 ARG B 163 1 14 HELIX 20 20 GLU B 165 TYR B 171 1 7 HELIX 21 21 ASN B 182 GLY B 194 1 13 HELIX 22 22 ASP B 200 ASN B 207 1 8 HELIX 23 23 PRO B 212 PHE B 221 1 10 HELIX 24 24 PRO B 222 TRP B 224 5 3 HELIX 25 25 THR B 249 LEU B 260 1 12 HELIX 26 26 GLY B 272 GLY B 276 5 5 SHEET 1 AA 8 VAL A 197 VAL A 198 0 SHEET 2 AA 8 LEU A 172 GLU A 175 1 O LEU A 174 N VAL A 198 SHEET 3 AA 8 VAL A 139 HIS A 143 1 O LEU A 140 N ALA A 173 SHEET 4 AA 8 ARG A 97 MSE A 100 1 O LEU A 98 N VAL A 139 SHEET 5 AA 8 LEU A 56 ARG A 58 1 O PHE A 57 N SER A 99 SHEET 6 AA 8 ILE A 2 PRO A 7 1 O LEU A 4 N LEU A 56 SHEET 7 AA 8 ALA A 264 VAL A 268 1 O ALA A 264 N ARG A 3 SHEET 8 AA 8 VAL A 230 LEU A 232 1 O VAL A 230 N MSE A 267 SHEET 1 AB 2 GLU A 9 ASN A 10 0 SHEET 2 AB 2 ALA A 15 THR A 16 -1 O ALA A 15 N ASN A 10 SHEET 1 BA 8 VAL B 197 VAL B 198 0 SHEET 2 BA 8 LEU B 172 GLU B 175 1 O LEU B 174 N VAL B 198 SHEET 3 BA 8 VAL B 139 HIS B 143 1 O LEU B 140 N ALA B 173 SHEET 4 BA 8 ARG B 97 MSE B 100 1 O LEU B 98 N VAL B 139 SHEET 5 BA 8 LEU B 56 ARG B 58 1 O PHE B 57 N SER B 99 SHEET 6 BA 8 ILE B 2 PRO B 7 1 O LEU B 4 N LEU B 56 SHEET 7 BA 8 ALA B 264 VAL B 268 1 O ALA B 264 N ARG B 3 SHEET 8 BA 8 VAL B 230 LEU B 232 1 O VAL B 230 N MSE B 267 SHEET 1 BB 2 GLU B 9 ASN B 10 0 SHEET 2 BB 2 ALA B 15 THR B 16 -1 O ALA B 15 N ASN B 10 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C SER A 99 N MSE A 100 1555 1555 1.32 LINK C MSE A 100 N HIS A 101 1555 1555 1.33 LINK C PRO A 228 N AALY A 229 1555 1555 1.33 LINK C AALY A 229 N VAL A 230 1555 1555 1.33 LINK C VAL A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N VAL A 268 1555 1555 1.33 LINK MN MN A1278 ND1 HIS A 231 1555 1555 2.34 LINK MN MN A1278 OE1 GLU A 269 1555 1555 2.22 LINK MN MN A1278 O3 PO4 A1281 1555 1555 2.21 LINK MN MN A1278 O1 PO4 A1281 1555 1555 2.46 LINK MN MN A1278 OD2 ASP A 200 1555 1555 2.07 LINK MN MN A1278 OE2 GLU A 175 1555 1555 2.12 LINK MN MN A1279 NE2 HIS A 101 1555 1555 2.19 LINK MN MN A1279 O1 PO4 A1281 1555 1555 2.37 LINK MN MN A1279 NE2 HIS A 143 1555 1555 2.26 LINK MN MN A1279 OE1 GLU A 175 1555 1555 2.16 LINK MN MN A1280 O HOH A2184 1555 1555 2.38 LINK MN MN A1280 O3 PO4 A1281 1555 1555 1.95 LINK MN MN A1280 NE2 HIS A 203 1555 1555 2.39 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C SER B 99 N MSE B 100 1555 1555 1.34 LINK C MSE B 100 N HIS B 101 1555 1555 1.33 LINK C PRO B 228 N AALY B 229 1555 1555 1.33 LINK C AALY B 229 N VAL B 230 1555 1555 1.34 LINK C VAL B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N VAL B 268 1555 1555 1.34 LINK MN MN B1278 OE1 GLU B 269 1555 1555 2.03 LINK MN MN B1278 ND1 HIS B 231 1555 1555 2.12 LINK MN MN B1278 OD2 ASP B 200 1555 1555 1.93 LINK MN MN B1278 O3 PO4 B1281 1555 1555 1.95 LINK MN MN B1278 OE2 GLU B 175 1555 1555 2.01 LINK MN MN B1279 O4 PO4 B1281 1555 1555 2.28 LINK MN MN B1279 OE1 GLU B 175 1555 1555 2.25 LINK MN MN B1279 NE2 HIS B 143 1555 1555 2.24 LINK MN MN B1280 NE2 HIS B 244 1555 1555 2.33 LINK MN MN B1280 O HOH B2172 1555 1555 2.33 LINK MN MN B1280 O3 PO4 B1281 1555 1555 2.46 LINK MN MN B1280 NE2 HIS B 203 1555 1555 2.50 SITE 1 AC1 5 GLU A 175 ASP A 200 HIS A 231 GLU A 269 SITE 2 AC1 5 PO4 A1281 SITE 1 AC2 4 HIS A 101 HIS A 143 GLU A 175 PO4 A1281 SITE 1 AC3 4 HIS A 203 HIS A 244 PO4 A1281 HOH A2184 SITE 1 AC4 11 HIS A 101 HIS A 143 GLU A 175 ASP A 200 SITE 2 AC4 11 HIS A 203 HIS A 231 HIS A 244 GLU A 269 SITE 3 AC4 11 MN A1278 MN A1279 MN A1280 SITE 1 AC5 5 GLU B 175 ASP B 200 HIS B 231 GLU B 269 SITE 2 AC5 5 PO4 B1281 SITE 1 AC6 4 HIS B 101 HIS B 143 GLU B 175 PO4 B1281 SITE 1 AC7 5 HIS B 203 GLY B 242 HIS B 244 PO4 B1281 SITE 2 AC7 5 HOH B2172 SITE 1 AC8 11 HIS B 101 HIS B 143 GLU B 175 ASP B 200 SITE 2 AC8 11 HIS B 203 HIS B 231 HIS B 244 GLU B 269 SITE 3 AC8 11 MN B1278 MN B1279 MN B1280 CRYST1 47.352 48.700 68.763 106.14 94.36 114.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021118 0.009491 0.005142 0.00000 SCALE2 0.000000 0.022512 0.008137 0.00000 SCALE3 0.000000 0.000000 0.015508 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.50000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.50000 1