HEADER TRANSCRIPTION 04-OCT-06 2J6W TITLE R164N MUTANT OF THE RUNX1 RUNT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUNT-RELATED TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RUNT DOMAIN, RESIDUES 46-185; COMPND 5 SYNONYM: CORE-BINDING FACTOR ALPHA 2 SUBUNIT, CBF-ALPHA 2, ACUTE COMPND 6 MYELOID LEUKEMIA 1 PROTEIN, ONCOGENE AML-1, POLYOMAVIRUS ENHANCER- COMPND 7 BINDING PROTEIN 2 ALPHA B SUBUNIT, PEBP2-ALPHA B, PEA2-ALPHA B, SL3-3 COMPND 8 ENHANCER FACTOR 1 ALPHA B SUBUNIT, SL3/AKV CORE-BINDING FACTOR ALPHA COMPND 9 B SUBUNIT, R164N MUTANT OF THE RUNX1 RUNT DOMAIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION/DNA, CHLORIDE BINDING, ACUTE KEYWDS 2 MYELOID LEUKEMIA, TRANSCRIPTION REGULATION, TRANSCRIPTION, NUCLEAR KEYWDS 3 PROTEIN, PHOSPHORYLATION, AML, RUNX1, IG FOLD, RUNT DOMAIN, DNA- KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.GREMBECKA,L.ZHE,S.M.LUKASIK,Y.LIU,I.BIELNICKA,J.H.BUSHWELLER, AUTHOR 2 N.A.SPECK REVDAT 5 13-DEC-23 2J6W 1 REMARK REVDAT 4 10-AUG-11 2J6W 1 JRNL REMARK REVDAT 3 13-JUL-11 2J6W 1 VERSN REVDAT 2 24-FEB-09 2J6W 1 VERSN REVDAT 1 09-OCT-07 2J6W 0 JRNL AUTH Z.LI,S.M.LUKASIK,Y.LIU,J.GREMBECKA,I.BIELNICKA, JRNL AUTH 2 J.H.BUSHWELLER,N.A.SPECK JRNL TITL A MUTATION IN THE S-SWITCH REGION OF THE RUNT DOMAIN ALTERS JRNL TITL 2 THE DYNAMICS OF AN ALLOSTERIC NETWORK RESPONSIBLE FOR JRNL TITL 3 CBFBETA REGULATION. JRNL REF J.MOL.BIOL. V. 364 1073 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17059830 JRNL DOI 10.1016/J.JMB.2006.10.002 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 7186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : -1.95000 REMARK 3 B33 (A**2) : 1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.383 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.087 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1934 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1774 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2638 ; 2.238 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4114 ; 1.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 2.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;27.479 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;10.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 9.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.045 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2156 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 384 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 259 ; 0.118 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1512 ; 0.094 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 871 ; 0.125 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1062 ; 0.060 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.068 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.041 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.058 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1595 ; 0.081 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 0.095 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 0.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 0.215 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9450 17.2180 15.5250 REMARK 3 T TENSOR REMARK 3 T11: -0.2292 T22: 0.1109 REMARK 3 T33: -0.3347 T12: -0.0538 REMARK 3 T13: 0.0534 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.0934 L22: 5.9979 REMARK 3 L33: 6.2781 L12: 0.2526 REMARK 3 L13: -0.2408 L23: 1.9086 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.0495 S13: 0.0443 REMARK 3 S21: 0.0567 S22: -0.1605 S23: 0.0784 REMARK 3 S31: -0.0006 S32: -0.0806 S33: 0.0897 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8480 -17.0970 18.7470 REMARK 3 T TENSOR REMARK 3 T11: -0.2214 T22: 0.1137 REMARK 3 T33: -0.2583 T12: -0.0376 REMARK 3 T13: 0.0697 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.2660 L22: 2.8049 REMARK 3 L33: 6.0319 L12: 1.2688 REMARK 3 L13: -0.2082 L23: 0.1894 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.0344 S13: 0.0615 REMARK 3 S21: -0.0495 S22: 0.0402 S23: 0.1474 REMARK 3 S31: -0.1839 S32: 0.0539 S33: 0.0021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BUILT IN ANL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1EAO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.1M SODIUM CACODYLATE REMARK 280 PH=6.5, 0.2M AMMONIUM SULFATE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.97400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.24850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.97400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.24850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 72 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 81 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 164 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 72 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 81 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 164 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 ASP A 48 REMARK 465 ARG A 49 REMARK 465 ARG A 174 REMARK 465 GLU A 175 REMARK 465 PRO A 176 REMARK 465 ARG A 177 REMARK 465 ARG A 178 REMARK 465 HIS A 179 REMARK 465 ARG A 180 REMARK 465 GLN A 181 REMARK 465 LYS A 182 REMARK 465 LEU A 183 REMARK 465 ASP A 184 REMARK 465 ASP A 185 REMARK 465 SER B 46 REMARK 465 GLY B 47 REMARK 465 ASP B 48 REMARK 465 ARG B 49 REMARK 465 ARG B 174 REMARK 465 GLU B 175 REMARK 465 PRO B 176 REMARK 465 ARG B 177 REMARK 465 ARG B 178 REMARK 465 HIS B 179 REMARK 465 ARG B 180 REMARK 465 GLN B 181 REMARK 465 LYS B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 184 REMARK 465 ASP B 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 112 89.69 -161.52 REMARK 500 ASP A 133 65.79 -154.27 REMARK 500 ASN B 132 -70.65 -46.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1175 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EAN RELATED DB: PDB REMARK 900 AN "S-SWITCH" AND CHLORIDE IONS MODULATE THE DNA-BINDING ABILITY OF REMARK 900 RUNX/AML1 REMARK 900 RELATED ID: 1EAO RELATED DB: PDB REMARK 900 AN "S-SWITCH" AND CHLORIDE IONS MODULATE THE DNA-BINDING ABILITY OF REMARK 900 RUNX/AML1 REMARK 900 RELATED ID: 1EAQ RELATED DB: PDB REMARK 900 AN "S-SWITCH" AND CHLORIDE IONS MODULATE THE DNA-BINDING ABILITY OF REMARK 900 RUNX/AML1 REMARK 900 RELATED ID: 1HJB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA REMARK 900 BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER REMARK 900 RELATED ID: 1HJC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A REMARK 900 DNA FRAGMENT FROM THE CSF-1R PROMOTER REMARK 900 RELATED ID: 1IO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE REMARK 900 DOMAIN HETERODIMER AND C/EBPBETA BZIPHOMODIMER BOUND TO A DNA REMARK 900 FRAGMENT FROM THE CSF-1R PROMOTER REMARK 999 REMARK 999 SEQUENCE REMARK 999 R164N DBREF 2J6W A 46 185 UNP Q03347 RUNX1_MOUSE 46 185 DBREF 2J6W B 46 185 UNP Q03347 RUNX1_MOUSE 46 185 SEQADV 2J6W SER A 72 UNP Q03347 CYS 72 ENGINEERED MUTATION SEQADV 2J6W SER A 81 UNP Q03347 CYS 81 ENGINEERED MUTATION SEQADV 2J6W ASN A 164 UNP Q03347 ARG 164 ENGINEERED MUTATION SEQADV 2J6W SER B 72 UNP Q03347 CYS 72 ENGINEERED MUTATION SEQADV 2J6W SER B 81 UNP Q03347 CYS 81 ENGINEERED MUTATION SEQADV 2J6W ASN B 164 UNP Q03347 ARG 164 ENGINEERED MUTATION SEQRES 1 A 140 SER GLY ASP ARG SER MET VAL GLU VAL LEU ALA ASP HIS SEQRES 2 A 140 PRO GLY GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU SEQRES 3 A 140 SER SER VAL LEU PRO THR HIS TRP ARG SER ASN LYS THR SEQRES 4 A 140 LEU PRO ILE ALA PHE LYS VAL VAL ALA LEU GLY ASP VAL SEQRES 5 A 140 PRO ASP GLY THR LEU VAL THR VAL MET ALA GLY ASN ASP SEQRES 6 A 140 GLU ASN TYR SER ALA GLU LEU ARG ASN ALA THR ALA ALA SEQRES 7 A 140 MET LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE SEQRES 8 A 140 VAL GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR SEQRES 9 A 140 ILE THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR SEQRES 10 A 140 HIS ASN ALA ILE LYS ILE THR VAL ASP GLY PRO ARG GLU SEQRES 11 A 140 PRO ARG ARG HIS ARG GLN LYS LEU ASP ASP SEQRES 1 B 140 SER GLY ASP ARG SER MET VAL GLU VAL LEU ALA ASP HIS SEQRES 2 B 140 PRO GLY GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU SEQRES 3 B 140 SER SER VAL LEU PRO THR HIS TRP ARG SER ASN LYS THR SEQRES 4 B 140 LEU PRO ILE ALA PHE LYS VAL VAL ALA LEU GLY ASP VAL SEQRES 5 B 140 PRO ASP GLY THR LEU VAL THR VAL MET ALA GLY ASN ASP SEQRES 6 B 140 GLU ASN TYR SER ALA GLU LEU ARG ASN ALA THR ALA ALA SEQRES 7 B 140 MET LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE SEQRES 8 B 140 VAL GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR SEQRES 9 B 140 ILE THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR SEQRES 10 B 140 HIS ASN ALA ILE LYS ILE THR VAL ASP GLY PRO ARG GLU SEQRES 11 B 140 PRO ARG ARG HIS ARG GLN LYS LEU ASP ASP HET CL A1174 1 HET CL A1175 1 HET CL B1174 1 HET CL B1175 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 4(CL 1-) FORMUL 7 HOH *49(H2 O) HELIX 1 1 SER A 50 HIS A 58 1 9 HELIX 2 2 SER B 50 HIS B 58 1 9 SHEET 1 AA 4 VAL A 63 ARG A 64 0 SHEET 2 AA 4 PHE A 70 SER A 72 -1 O SER A 72 N VAL A 63 SHEET 3 AA 4 LYS A 90 ALA A 93 -1 O VAL A 92 N LEU A 71 SHEET 4 AA 4 VAL A 128 ARG A 130 -1 O ALA A 129 N VAL A 91 SHEET 1 AB 2 HIS A 78 ARG A 80 0 SHEET 2 AB 2 LYS A 167 THR A 169 1 O LYS A 167 N TRP A 79 SHEET 1 AC 3 ASN A 112 ALA A 115 0 SHEET 2 AC 3 LEU A 102 ASN A 109 -1 O ALA A 107 N ALA A 115 SHEET 3 AC 3 THR A 121 ALA A 123 -1 O ALA A 122 N VAL A 103 SHEET 1 AD 4 ASN A 112 ALA A 115 0 SHEET 2 AD 4 LEU A 102 ASN A 109 -1 O ALA A 107 N ALA A 115 SHEET 3 AD 4 THR A 147 VAL A 152 -1 O THR A 147 N GLY A 108 SHEET 4 AD 4 GLN A 158 THR A 161 -1 O GLN A 158 N VAL A 152 SHEET 1 AE 2 LEU A 117 ARG A 118 0 SHEET 2 AE 2 ARG A 135 PHE A 136 -1 O ARG A 135 N ARG A 118 SHEET 1 BA 9 LEU B 62 ARG B 64 0 SHEET 2 BA 9 PHE B 70 SER B 73 -1 O SER B 72 N VAL B 63 SHEET 3 BA 9 LYS B 90 ALA B 93 -1 O LYS B 90 N SER B 73 SHEET 4 BA 9 VAL B 128 ARG B 130 -1 O ALA B 129 N VAL B 91 SHEET 5 BA 9 THR B 121 LYS B 125 -1 O ALA B 123 N ARG B 130 SHEET 6 BA 9 LEU B 102 GLY B 108 -1 O VAL B 103 N ALA B 122 SHEET 7 BA 9 PHE B 146 VAL B 152 -1 O THR B 147 N GLY B 108 SHEET 8 BA 9 GLN B 158 THR B 169 -1 O GLN B 158 N VAL B 152 SHEET 9 BA 9 HIS B 78 ARG B 80 1 O TRP B 79 N THR B 169 SHEET 1 BB 2 LEU B 117 ARG B 118 0 SHEET 2 BB 2 ARG B 135 PHE B 136 -1 O ARG B 135 N ARG B 118 CISPEP 1 ASN A 155 PRO A 156 0 -1.46 CISPEP 2 ASN B 155 PRO B 156 0 1.28 SITE 1 AC1 3 ASN A 112 GLU A 116 GLY A 138 SITE 1 AC2 1 VAL B 170 SITE 1 AC3 2 ASN B 112 GLU B 116 CRYST1 91.948 46.497 63.552 90.00 90.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010876 0.000000 0.000125 0.00000 SCALE2 0.000000 0.021507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015736 0.00000