HEADER TRANSCRIPTION 17-OCT-06 2J7Y TITLE STRUCTURE OF 17-EPIESTRIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX TITLE 2 WITH LXXLL MOTIF FROM NCOA5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES 255-509; COMPND 5 SYNONYM: ER-BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 5; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: LXXLL PEPTIDE, RESIDUES 338-354; COMPND 11 SYNONYM: NCOA-5, COACTIVATOR INDEPENDENT OF AF-2, CIA, NCOA5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GI724; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLEX; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS RECEPTOR, ACTIVATOR, REPRESSOR, ZINC-FINGER, NUCLEAR RECEPTOR, KEYWDS 2 TRANSCRIPTION FACTOR, NUCLEAR PROTEIN, PHOSPHORYLATION, STEROID- KEYWDS 3 BINDING, COACTIVATOR, COREPRESSOR, DNA-BINDING, GLYCOPROTEIN, KEYWDS 4 TRANSCRIPTION REGULATION, TRANSCRIPTION, METAL-BINDING, LIPID- KEYWDS 5 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,A.M.BRZOZOWSKI,R.E.HUBBARD,J.WALTON,T.BONN,A.-G.THORSELL, AUTHOR 2 O.ENGSTROM,J.LJUNGGREN,J.-A.GUSTAFFSON,M.CARLQUIST REVDAT 4 13-DEC-23 2J7Y 1 REMARK REVDAT 3 13-JUL-11 2J7Y 1 VERSN REVDAT 2 24-FEB-09 2J7Y 1 VERSN REVDAT 1 07-NOV-06 2J7Y 0 JRNL AUTH A.C.W.PIKE,A.M.BRZOZOWSKI,R.E.HUBBARD,J.WALTON,T.BONN, JRNL AUTH 2 A.-G.THORSELL,O.ENGSTROM,J.LJUNGGREN,J.-A.GUSTAFFSON, JRNL AUTH 3 M.CARLQUIST JRNL TITL STRUCTURE OF AGONIST-BOUND ESTROGEN RECEPTOR BETA LBD IN JRNL TITL 2 COMPLEX WITH LXXLL MOTIF FROM NCOA5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1935 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1306 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2604 ; 1.362 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3237 ; 1.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 5.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;37.658 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;13.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 335 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 425 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1304 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 955 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 898 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1243 ; 2.188 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1897 ; 2.955 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 817 ; 4.085 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 707 ; 5.443 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 453 REMARK 3 RESIDUE RANGE : B 343 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9918 41.4460 76.9937 REMARK 3 T TENSOR REMARK 3 T11: -0.1899 T22: -0.1280 REMARK 3 T33: -0.1458 T12: -0.0327 REMARK 3 T13: 0.0000 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.8644 L22: 1.2855 REMARK 3 L33: 2.1311 L12: -0.0240 REMARK 3 L13: 0.1859 L23: -0.3855 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0799 S13: -0.3013 REMARK 3 S21: 0.0205 S22: 0.0609 S23: 0.1323 REMARK 3 S31: 0.1947 S32: -0.1864 S33: -0.0559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-7%PEG8K, 5-7% PEG1K, 0.13M LITHIUM REMARK 280 SULPHATE, 0.1M TRIS PH8.0, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.82000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.91000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.82000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.73000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1462 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2112 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2126 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 210 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 LEU A 215 REMARK 465 SER A 216 REMARK 465 ARG A 239 REMARK 465 PRO A 240 REMARK 465 SER A 241 REMARK 465 MET A 242 REMARK 465 PRO A 243 REMARK 465 ALA A 369 REMARK 465 SER A 370 REMARK 465 ALA A 371 REMARK 465 ASN A 372 REMARK 465 GLN A 373 REMARK 465 GLU A 374 REMARK 465 THR A 454 REMARK 465 LEU A 455 REMARK 465 ARG A 456 REMARK 465 GLY A 457 REMARK 465 TYR A 458 REMARK 465 LYS A 459 REMARK 465 SER A 460 REMARK 465 SER A 461 REMARK 465 ILE A 462 REMARK 465 SER A 463 REMARK 465 GLY A 464 REMARK 465 HIS B 338 REMARK 465 PRO B 339 REMARK 465 PRO B 340 REMARK 465 ALA B 341 REMARK 465 ILE B 342 REMARK 465 ASN B 352 REMARK 465 ARG B 353 REMARK 465 TYR B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 237 CG1 CG2 REMARK 470 LYS A 255 CE NZ REMARK 470 GLU A 376 CD OE1 OE2 REMARK 470 ARG A 379 CD NE CZ NH1 NH2 REMARK 470 LYS A 426 CD CE NZ REMARK 470 HIS A 453 ND1 CD2 CE1 NE2 REMARK 470 ILE B 346 CD1 REMARK 470 ASP B 351 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 313 O HOH A 2056 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 223 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 LEU A 223 CB - CG - CD2 ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 362 42.26 75.24 REMARK 500 ASP A 444 -132.15 59.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A1461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E3O A1454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1460 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HJ1 RELATED DB: PDB REMARK 900 RAT OESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH REMARK 900 PURE ANTIOESTROGEN ICI164,384 REMARK 900 RELATED ID: 1QKN RELATED DB: PDB REMARK 900 RAT OESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH REMARK 900 ANTAGONIST RALOXIFENE REMARK 900 RELATED ID: 1V95 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF ANTICODON BINDING DOMAIN FROM NUCLEARRECEPTOR REMARK 900 COACTIVATOR 5 (HUMAN KIAA1637 PROTEIN) REMARK 900 RELATED ID: 2J7X RELATED DB: PDB REMARK 900 STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX REMARK 900 WITH LXXLL MOTIF FROM NCOA5 DBREF 2J7Y A 210 464 UNP Q62986 ESR2_RAT 255 509 DBREF 2J7Y B 338 354 UNP Q9HCD5 NCOA5_HUMAN 338 354 SEQRES 1 A 255 VAL LYS GLU LEU LEU LEU SER THR LEU SER PRO GLU GLN SEQRES 2 A 255 LEU VAL LEU THR LEU LEU GLU ALA GLU PRO PRO ASN VAL SEQRES 3 A 255 LEU VAL SER ARG PRO SER MET PRO PHE THR GLU ALA SER SEQRES 4 A 255 MET MET MET SER LEU THR LYS LEU ALA ASP LYS GLU LEU SEQRES 5 A 255 VAL HIS MET ILE GLY TRP ALA LYS LYS ILE PRO GLY PHE SEQRES 6 A 255 VAL GLU LEU SER LEU LEU ASP GLN VAL ARG LEU LEU GLU SEQRES 7 A 255 SER CYS TRP MET GLU VAL LEU MET VAL GLY LEU MET TRP SEQRES 8 A 255 ARG SER ILE ASP HIS PRO GLY LYS LEU ILE PHE ALA PRO SEQRES 9 A 255 ASP LEU VAL LEU ASP ARG ASP GLU GLY LYS CYS VAL GLU SEQRES 10 A 255 GLY ILE LEU GLU ILE PHE ASP MET LEU LEU ALA THR THR SEQRES 11 A 255 SER ARG PHE ARG GLU LEU LYS LEU GLN HIS LYS GLU TYR SEQRES 12 A 255 LEU CYS VAL LYS ALA MET ILE LEU LEU ASN SER SER MET SEQRES 13 A 255 TYR PRO LEU ALA SER ALA ASN GLN GLU ALA GLU SER SER SEQRES 14 A 255 ARG LYS LEU THR HIS LEU LEU ASN ALA VAL THR ASP ALA SEQRES 15 A 255 LEU VAL TRP VAL ILE ALA LYS SER GLY ILE SER SER GLN SEQRES 16 A 255 GLN GLN SER VAL ARG LEU ALA ASN LEU LEU MET LEU LEU SEQRES 17 A 255 SER HIS VAL ARG HIS ILE SER ASN LYS GLY MET GLU HIS SEQRES 18 A 255 LEU LEU SER MET LYS CYS LYS ASN VAL VAL PRO VAL TYR SEQRES 19 A 255 ASP LEU LEU LEU GLU MET LEU ASN ALA HIS THR LEU ARG SEQRES 20 A 255 GLY TYR LYS SER SER ILE SER GLY SEQRES 1 B 17 HIS PRO PRO ALA ILE GLN SER LEU ILE ASN LEU LEU ALA SEQRES 2 B 17 ASP ASN ARG TYR HET E3O A1454 21 HET EDO A1455 4 HET EDO A1456 4 HET EDO A1457 4 HET EDO A1458 4 HET EDO A1459 4 HET EDO A1460 4 HET BCT A1461 4 HET SO4 A1462 5 HETNAM E3O (16ALPHA,17ALPHA)-ESTRA-1,3,5(10)-TRIENE-3,16,17-TRIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM BCT BICARBONATE ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 E3O C18 H24 O3 FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 BCT C H O3 1- FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *163(H2 O) HELIX 1 1 SER A 219 ALA A 230 1 12 HELIX 2 2 THR A 245 ILE A 271 1 27 HELIX 3 3 GLY A 273 LEU A 277 5 5 HELIX 4 4 SER A 278 ILE A 303 1 26 HELIX 5 5 ASP A 320 VAL A 325 5 6 HELIX 6 6 GLY A 327 LYS A 346 1 20 HELIX 7 7 GLN A 348 LEU A 361 1 14 HELIX 8 8 ALA A 375 SER A 399 1 25 HELIX 9 9 SER A 402 LYS A 437 1 36 HELIX 10 10 TYR A 443 ALA A 452 1 10 HELIX 11 11 SER B 344 ASP B 351 1 8 SHEET 1 AA 2 LYS A 308 ALA A 312 0 SHEET 2 AA 2 LEU A 315 ASP A 318 -1 O LEU A 315 N PHE A 311 SITE 1 AC1 8 ASN A 234 VAL A 235 GLU A 260 ARG A 301 SITE 2 AC1 8 PHE A 311 PRO A 313 EDO A1456 HOH A2159 SITE 1 AC2 4 SER A 278 LEU A 279 HOH A2160 HOH A2161 SITE 1 AC3 9 LEU A 253 GLU A 260 LEU A 294 MET A 295 SITE 2 AC3 9 ARG A 301 GLY A 427 HIS A 430 LEU A 431 SITE 3 AC3 9 HOH A2020 SITE 1 AC4 6 GLU A 231 ARG A 301 TYR A 352 LYS A 356 SITE 2 AC4 6 EDO A1456 HOH A2094 SITE 1 AC5 5 ASN A 234 GLU A 260 EDO A1455 BCT A1461 SITE 2 AC5 5 HOH A2154 SITE 1 AC6 4 ASP A 258 TYR A 443 ASP A 444 HOH A2015 SITE 1 AC7 5 ASN A 234 TRP A 300 HOH A2047 HOH A2049 SITE 2 AC7 5 HOH A2155 SITE 1 AC8 5 LEU A 228 GLU A 231 TRP A 300 HIS A 349 SITE 2 AC8 5 HOH A2156 SITE 1 AC9 6 SER A 363 SER A 364 LEU A 414 SER A 418 SITE 2 AC9 6 HOH A2157 HOH A2158 CRYST1 62.640 62.640 171.640 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005826 0.00000