HEADER ELECTRON TRANSPORT 24-OCT-06 2J8C TITLE X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER TITLE 2 FROM RB. SPHAEROIDES AT PH 8 IN THE NEUTRAL STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REACTION CENTER PROTEIN H CHAIN; COMPND 3 CHAIN: H; COMPND 4 SYNONYM: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT; COMPND 5 OTHER_DETAILS: PH 8 NEUTRAL STATE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: REACTION CENTER PROTEIN L CHAIN; COMPND 8 CHAIN: L; COMPND 9 SYNONYM: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT; COMPND 10 OTHER_DETAILS: PH 8 NEUTRAL STATE; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: REACTION CENTER PROTEIN M CHAIN; COMPND 13 CHAIN: M; COMPND 14 SYNONYM: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT; COMPND 15 OTHER_DETAILS: PH 8 NEUTRAL STATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 6 ORGANISM_TAXID: 1063; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 9 ORGANISM_TAXID: 1063 KEYWDS BACTERIOCHLOROPHYLL, PHOSPHATIDYLCHOLINE, CHLOROPHYLL, CARDIOLIPIN, KEYWDS 2 METAL-BINDING, TRANSMEMBRANE, GLUCOSYLGALACTOSYL DIACYLGLYCEROL, KEYWDS 3 PROTON TRANSLOCATION PATHWAYS, PHOTOSYNTHESIS, REACTION CENTER, KEYWDS 4 ELECTRON TRANSPORT, IRON, MEMBRANE, TRANSPORT, MAGNESIUM, KEYWDS 5 CHROMOPHORE, BINDING POSITIONS OF THE SECONDARY QUINONE QB EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEPKE,R.DIEHM,G.FRITZSCH REVDAT 5 13-DEC-23 2J8C 1 COMPND HETNAM LINK REVDAT 4 24-JUL-19 2J8C 1 REMARK REVDAT 3 24-FEB-09 2J8C 1 VERSN REVDAT 2 14-AUG-07 2J8C 1 JRNL REVDAT 1 03-JUL-07 2J8C 0 JRNL AUTH J.KOEPKE,E.M.KRAMMER,A.R.KLINGEN,P.SEBBAN,G.M.ULLMANN, JRNL AUTH 2 G.FRITZSCH JRNL TITL PH MODULATES THE QUINONE POSITION IN THE PHOTOSYNTHETIC JRNL TITL 2 REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE NEUTRAL JRNL TITL 3 AND CHARGE SEPARATED STATES. JRNL REF J.MOL.BIOL. V. 371 396 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17570397 JRNL DOI 10.1016/J.JMB.2007.04.082 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 119.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 144184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 836 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7625 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10380 ; 2.438 ; 2.053 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 5.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;32.756 ;22.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;12.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1011 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5620 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3834 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5141 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 472 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4175 ; 0.825 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6517 ; 1.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4009 ; 2.023 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3854 ; 2.917 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. 5 RESIDUES OF THE M SUBUNIT C-TERM ARE MISSING, 10 REMARK 3 RESIDUES EACH OF THE H SUBUNIT C- AND N-TERM ARE MISSING REMARK 4 REMARK 4 2J8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84530 REMARK 200 MONOCHROMATOR : DOUBLE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESERACH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 199.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 1.920 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1PCR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.53767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.07533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.07533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.53767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 24570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H 1 REMARK 465 VAL H 2 REMARK 465 GLY H 3 REMARK 465 VAL H 4 REMARK 465 THR H 5 REMARK 465 ALA H 6 REMARK 465 PHE H 7 REMARK 465 GLY H 8 REMARK 465 ASN H 9 REMARK 465 PHE H 10 REMARK 465 VAL H 252 REMARK 465 ALA H 253 REMARK 465 ALA H 254 REMARK 465 MET H 255 REMARK 465 LEU H 256 REMARK 465 ALA H 257 REMARK 465 GLU H 258 REMARK 465 TYR H 259 REMARK 465 ALA H 260 REMARK 465 ALA M 304 REMARK 465 PRO M 305 REMARK 465 LEU M 306 REMARK 465 ASN M 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 60 CD CE NZ REMARK 470 VAL H 251 CA C O CB CG1 CG2 REMARK 470 LYS L 202 CD CE NZ REMARK 470 ALA M 1 CB REMARK 470 MET M 303 CA C O CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 2086 O HOH M 2065 2.18 REMARK 500 O HOH L 2086 O HOH M 2103 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 2039 O HOH H 2039 4555 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 249 91.64 133.56 REMARK 500 VAL L 31 -90.81 -93.77 REMARK 500 LEU L 133 -63.21 -127.31 REMARK 500 THR L 253 -83.00 -122.49 REMARK 500 TRP L 272 -6.75 -141.26 REMARK 500 GLU M 22 -127.55 43.60 REMARK 500 LEU M 52 -103.82 -97.22 REMARK 500 PHE M 162 -62.96 -135.32 REMARK 500 ASN M 195 109.64 89.95 REMARK 500 ASP M 240 79.75 -157.03 REMARK 500 HIS M 301 -9.81 56.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA H 138 GLY H 139 -41.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U10 L 1287 REMARK 610 U10 M 1309 REMARK 610 CDL M 1311 REMARK 610 PC1 M 1312 REMARK 610 GGD M 1313 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L1282 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 153 NE2 REMARK 620 2 BCL L1282 NA 102.0 REMARK 620 3 BCL L1282 NB 102.0 89.9 REMARK 620 4 BCL L1282 NC 92.6 165.2 89.1 REMARK 620 5 BCL L1282 ND 97.7 88.6 160.2 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L1288 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 173 NE2 REMARK 620 2 BCL L1288 NA 94.1 REMARK 620 3 BCL L1288 NB 94.7 90.5 REMARK 620 4 BCL L1288 NC 95.0 170.9 90.0 REMARK 620 5 BCL L1288 ND 99.4 87.6 165.9 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE M1307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 85.7 REMARK 620 3 HIS M 219 NE2 112.3 94.1 REMARK 620 4 GLU M 234 OE2 154.3 92.6 93.4 REMARK 620 5 GLU M 234 OE1 94.9 82.4 152.3 59.5 REMARK 620 6 HIS M 266 NE2 89.9 168.5 97.5 86.8 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL M1303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 182 NE2 REMARK 620 2 BCL M1303 NA 100.0 REMARK 620 3 BCL M1303 NB 101.7 88.8 REMARK 620 4 BCL M1303 NC 93.7 166.3 89.0 REMARK 620 5 BCL M1303 ND 99.9 87.5 158.4 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL M1304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 202 NE2 REMARK 620 2 BCL M1304 NA 97.2 REMARK 620 3 BCL M1304 NB 100.5 89.8 REMARK 620 4 BCL M1304 NC 99.7 163.0 89.0 REMARK 620 5 BCL M1304 ND 101.9 87.6 157.6 87.1 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL M1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL M1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L1282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA M1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA M1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA L1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA L1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA L1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE M1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH M1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH L1286 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 M1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 L1287 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPO M1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDL M1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PC1 M1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGD M1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 L1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTO L1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTO L1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H1254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AIG RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE REMARK 900 D+QB- CHARGE SEPARATED STATE REMARK 900 RELATED ID: 1AIJ RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE REMARK 900 CHARGE-NEUTRAL DQAQB STATE REMARK 900 RELATED ID: 1DS8 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE REMARK 900 CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR CD2 + REMARK 900 RELATED ID: 1DV3 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE REMARK 900 CHARGE-SEPARATED D+QAQB - STATE WITH THE PROTON TRANSFER INHIBITOR REMARK 900 CD2+ REMARK 900 RELATED ID: 1DV6 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE REMARK 900 CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR ZN2 + REMARK 900 RELATED ID: 1E14 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M197 REPLACED WITH REMARK 900 ARG (CHAIN M, FM197R) AND GLY M203 REPLACED WITH ASP (CHAIN M, REMARK 900 GM203D) REMARK 900 RELATED ID: 1E6D RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TRP M115REPLACED WITH REMARK 900 PHE (CHAIN M, WM115F) PHE M197 REPLACED WITHARG (CHAIN M, FM197R) REMARK 900 RELATED ID: 1F6N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> REMARK 900 TYR FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1FNP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> REMARK 900 PHE FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1FNQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> REMARK 900 GLU FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1JGW RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH THR M 21REPLACED WITH LEU REMARK 900 RELATED ID: 1JGX RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH THR M 21REPLACED WITH ASP REMARK 900 RELATED ID: 1JGY RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TYR M 76REPLACED WITH PHE REMARK 900 RELATED ID: 1JGZ RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TYR M 76REPLACED WITH LYS REMARK 900 RELATED ID: 1JH0 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLU L 205REPLACED TO LEU REMARK 900 RELATED ID: 1K6L RELATED DB: PDB REMARK 900 PHOTOSYNETHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1K6N RELATED DB: PDB REMARK 900 E(L212)A,D(L213)A DOUBLE MUTANT STRUCTURE OF PHOTOSYNTHETICREACTION REMARK 900 CENTER FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1KBY RELATED DB: PDB REMARK 900 STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER WITHBACTERIOCHLOROPHYLL- REMARK 900 BACTERIOPHEOPHYTIN HETERODIMER REMARK 900 RELATED ID: 1L9B RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CYTOCHROME-C(2)- PHOTOSYNTHETICREACTION REMARK 900 CENTER ELECTRON TRANSFER COMPLEX FROM RHODOBACTERSPHAEROIDES IN REMARK 900 TYPE II CO-CRYSTALS REMARK 900 RELATED ID: 1L9J RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CYTOCHROME-C(2)- PHOTOSYNTHETICREACTION REMARK 900 CENTER ELECTRON TRANSFER COMPLEX FROM RHODOBACTERSPHAEROIDES IN REMARK 900 TYPE I CO-CRYSTALS REMARK 900 RELATED ID: 1M3X RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1MPS RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M 197 REPLACED WITH REMARK 900 ARG AND TYR M 177 REPLACED WITH PHE (CHAIN M, Y177F, F197R) REMARK 900 RELATED ID: 1OGV RELATED DB: PDB REMARK 900 LIPIDIC CUBIC PHASE CRYSTAL STRUCTURE OF THE PHOTOSYNTHETIC REMARK 900 REACTION CENTRE FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1PCR RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER REMARK 900 RELATED ID: 1PSS RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER (WILD-TYPE) REMARK 900 RELATED ID: 1PST RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH HIS M 202 REPLACED WITH REMARK 900 LEU (H(M 202)L) REMARK 900 RELATED ID: 1QOV RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ALA M260 REPLACED WITH REMARK 900 TRP (CHAIN M, AM260W) REMARK 900 RELATED ID: 1RG5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTRE FROMRHODOBACTER REMARK 900 SPHAEROIDES CAROTENOIDLESS STRAIN R-26.1 REMARK 900 RELATED ID: 1RGN RELATED DB: PDB REMARK 900 STRUCTURE OF THE REACTION CENTRE FROM RHODOBACTERSPHAEROIDES REMARK 900 CAROTENOIDLESS STRAIN R- 26.1 RECONSTITUTEDWITH SPHEROIDENE REMARK 900 RELATED ID: 1RQK RELATED DB: PDB REMARK 900 STRUCTURE OF THE REACTION CENTRE FROM RHODOBACTERSPHAEROIDES REMARK 900 CAROTENOIDLESS STRAIN R- 26.1 RECONSTITUTEDWITH 3,4- REMARK 900 DIHYDROSPHEROIDENE REMARK 900 RELATED ID: 1RVJ RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER REMARK 900 SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG H177 REPLACED REMARK 900 WITH HIS REMARK 900 RELATED ID: 1RY5 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT FROM RHODOBACTERSPHAEROIDES REMARK 900 WITH ASP L213 REPLACED WITH ASN REMARK 900 RELATED ID: 1RZH RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER REMARK 900 SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED REMARK 900 WITH CYS IN THE CHARGE-NEUTRAL DQAQBSTATE ( TRIGONAL FORM) REMARK 900 RELATED ID: 1RZZ RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER REMARK 900 SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED REMARK 900 WITH CYS IN THE CHARGE-NEUTRAL DQAQBSTATE ( TETRAGONAL FORM) REMARK 900 RELATED ID: 1S00 RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER REMARK 900 SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED REMARK 900 WITH CYS IN THE CHARGE-SEPARATEDD+QAQB- STATE REMARK 900 RELATED ID: 1UMX RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ARG M267 REPLACED WITH REMARK 900 LEU (CHAIN M, R267L) REMARK 900 RELATED ID: 1YST RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER (WILD TYPE) REMARK 900 RELATED ID: 1Z9J RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 1Z9K RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES REMARK 900 RELATED ID: 2BNP RELATED DB: PDB REMARK 900 LIPIDIC CUBIC PHASE GROWN REACTION CENTRE FROM RHODOBACTER REMARK 900 SPHAEROIDES, GROUND STATE REMARK 900 RELATED ID: 2BNS RELATED DB: PDB REMARK 900 LIPIDIC CUBIC PHASE GROWN REACTION CENTRE FROM RHODOBACTER REMARK 900 SPHAEROIDES, EXCITED STATE REMARK 900 RELATED ID: 2BOZ RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLY M203 REPLACED WITH REMARK 900 LEU REMARK 900 RELATED ID: 2J8D RELATED DB: PDB REMARK 900 X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION REMARK 900 CENTER FROM RB. SPHAEROIDES AT PH 8 IN THE CHARGE- SEPARATED STATE REMARK 900 RELATED ID: 2RCR RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER FROM (RHODOBACTER SPHAEROIDES) REMARK 900 RELATED ID: 4RCR RELATED DB: PDB REMARK 900 PHOTOSYNTHETIC REACTION CENTER DBREF 2J8C L 1 281 UNP P0C0Y8 RCEL_RHOSH 1 281 DBREF 2J8C M 1 307 UNP P0C0Y9 RCEM_RHOSH 1 307 DBREF 2J8C H 1 260 UNP P0C0Y7 RCEH_RHOSH 1 260 SEQRES 1 H 260 MET VAL GLY VAL THR ALA PHE GLY ASN PHE ASP LEU ALA SEQRES 2 H 260 SER LEU ALA ILE TYR SER PHE TRP ILE PHE LEU ALA GLY SEQRES 3 H 260 LEU ILE TYR TYR LEU GLN THR GLU ASN MET ARG GLU GLY SEQRES 4 H 260 TYR PRO LEU GLU ASN GLU ASP GLY THR PRO ALA ALA ASN SEQRES 5 H 260 GLN GLY PRO PHE PRO LEU PRO LYS PRO LYS THR PHE ILE SEQRES 6 H 260 LEU PRO HIS GLY ARG GLY THR LEU THR VAL PRO GLY PRO SEQRES 7 H 260 GLU SER GLU ASP ARG PRO ILE ALA LEU ALA ARG THR ALA SEQRES 8 H 260 VAL SER GLU GLY PHE PRO HIS ALA PRO THR GLY ASP PRO SEQRES 9 H 260 MET LYS ASP GLY VAL GLY PRO ALA SER TRP VAL ALA ARG SEQRES 10 H 260 ARG ASP LEU PRO GLU LEU ASP GLY HIS GLY HIS ASN LYS SEQRES 11 H 260 ILE LYS PRO MET LYS ALA ALA ALA GLY PHE HIS VAL SER SEQRES 12 H 260 ALA GLY LYS ASN PRO ILE GLY LEU PRO VAL ARG GLY CYS SEQRES 13 H 260 ASP LEU GLU ILE ALA GLY LYS VAL VAL ASP ILE TRP VAL SEQRES 14 H 260 ASP ILE PRO GLU GLN MET ALA ARG PHE LEU GLU VAL GLU SEQRES 15 H 260 LEU LYS ASP GLY SER THR ARG LEU LEU PRO MET GLN MET SEQRES 16 H 260 VAL LYS VAL GLN SER ASN ARG VAL HIS VAL ASN ALA LEU SEQRES 17 H 260 SER SER ASP LEU PHE ALA GLY ILE PRO THR ILE LYS SER SEQRES 18 H 260 PRO THR GLU VAL THR LEU LEU GLU GLU ASP LYS ILE CYS SEQRES 19 H 260 GLY TYR VAL ALA GLY GLY LEU MET TYR ALA ALA PRO LYS SEQRES 20 H 260 ARG LYS SER VAL VAL ALA ALA MET LEU ALA GLU TYR ALA SEQRES 1 L 281 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL PRO GLY SEQRES 2 L 281 GLY THR LEU VAL GLY GLY ASN LEU PHE ASP PHE TRP VAL SEQRES 3 L 281 GLY PRO PHE TYR VAL GLY PHE PHE GLY VAL ALA THR PHE SEQRES 4 L 281 PHE PHE ALA ALA LEU GLY ILE ILE LEU ILE ALA TRP SER SEQRES 5 L 281 ALA VAL LEU GLN GLY THR TRP ASN PRO GLN LEU ILE SER SEQRES 6 L 281 VAL TYR PRO PRO ALA LEU GLU TYR GLY LEU GLY GLY ALA SEQRES 7 L 281 PRO LEU ALA LYS GLY GLY LEU TRP GLN ILE ILE THR ILE SEQRES 8 L 281 CYS ALA THR GLY ALA PHE VAL SER TRP ALA LEU ARG GLU SEQRES 9 L 281 VAL GLU ILE CYS ARG LYS LEU GLY ILE GLY TYR HIS ILE SEQRES 10 L 281 PRO PHE ALA PHE ALA PHE ALA ILE LEU ALA TYR LEU THR SEQRES 11 L 281 LEU VAL LEU PHE ARG PRO VAL MET MET GLY ALA TRP GLY SEQRES 12 L 281 TYR ALA PHE PRO TYR GLY ILE TRP THR HIS LEU ASP TRP SEQRES 13 L 281 VAL SER ASN THR GLY TYR THR TYR GLY ASN PHE HIS TYR SEQRES 14 L 281 ASN PRO ALA HIS MET ILE ALA ILE SER PHE PHE PHE THR SEQRES 15 L 281 ASN ALA LEU ALA LEU ALA LEU HIS GLY ALA LEU VAL LEU SEQRES 16 L 281 SER ALA ALA ASN PRO GLU LYS GLY LYS GLU MET ARG THR SEQRES 17 L 281 PRO ASP HIS GLU ASP THR PHE PHE ARG ASP LEU VAL GLY SEQRES 18 L 281 TYR SER ILE GLY THR LEU GLY ILE HIS ARG LEU GLY LEU SEQRES 19 L 281 LEU LEU SER LEU SER ALA VAL PHE PHE SER ALA LEU CYS SEQRES 20 L 281 MET ILE ILE THR GLY THR ILE TRP PHE ASP GLN TRP VAL SEQRES 21 L 281 ASP TRP TRP GLN TRP TRP VAL LYS LEU PRO TRP TRP ALA SEQRES 22 L 281 ASN ILE PRO GLY GLY ILE ASN GLY SEQRES 1 M 307 ALA GLU TYR GLN ASN ILE PHE SER GLN VAL GLN VAL ARG SEQRES 2 M 307 GLY PRO ALA ASP LEU GLY MET THR GLU ASP VAL ASN LEU SEQRES 3 M 307 ALA ASN ARG SER GLY VAL GLY PRO PHE SER THR LEU LEU SEQRES 4 M 307 GLY TRP PHE GLY ASN ALA GLN LEU GLY PRO ILE TYR LEU SEQRES 5 M 307 GLY SER LEU GLY VAL LEU SER LEU PHE SER GLY LEU MET SEQRES 6 M 307 TRP PHE PHE THR ILE GLY ILE TRP PHE TRP TYR GLN ALA SEQRES 7 M 307 GLY TRP ASN PRO ALA VAL PHE LEU ARG ASP LEU PHE PHE SEQRES 8 M 307 PHE SER LEU GLU PRO PRO ALA PRO GLU TYR GLY LEU SER SEQRES 9 M 307 PHE ALA ALA PRO LEU LYS GLU GLY GLY LEU TRP LEU ILE SEQRES 10 M 307 ALA SER PHE PHE MET PHE VAL ALA VAL TRP SER TRP TRP SEQRES 11 M 307 GLY ARG THR TYR LEU ARG ALA GLN ALA LEU GLY MET GLY SEQRES 12 M 307 LYS HIS THR ALA TRP ALA PHE LEU SER ALA ILE TRP LEU SEQRES 13 M 307 TRP MET VAL LEU GLY PHE ILE ARG PRO ILE LEU MET GLY SEQRES 14 M 307 SER TRP SER GLU ALA VAL PRO TYR GLY ILE PHE SER HIS SEQRES 15 M 307 LEU ASP TRP THR ASN ASN PHE SER LEU VAL HIS GLY ASN SEQRES 16 M 307 LEU PHE TYR ASN PRO PHE HIS GLY LEU SER ILE ALA PHE SEQRES 17 M 307 LEU TYR GLY SER ALA LEU LEU PHE ALA MET HIS GLY ALA SEQRES 18 M 307 THR ILE LEU ALA VAL SER ARG PHE GLY GLY GLU ARG GLU SEQRES 19 M 307 LEU GLU GLN ILE ALA ASP ARG GLY THR ALA ALA GLU ARG SEQRES 20 M 307 ALA ALA LEU PHE TRP ARG TRP THR MET GLY PHE ASN ALA SEQRES 21 M 307 THR MET GLU GLY ILE HIS ARG TRP ALA ILE TRP MET ALA SEQRES 22 M 307 VAL LEU VAL THR LEU THR GLY GLY ILE GLY ILE LEU LEU SEQRES 23 M 307 SER GLY THR VAL VAL ASP ASN TRP TYR VAL TRP GLY GLN SEQRES 24 M 307 ASN HIS GLY MET ALA PRO LEU ASN HET GOL H1251 6 HET GOL H1252 6 HET GOL H1253 6 HET GOL H1254 6 HET BCL L1282 66 HET LDA L1283 16 HET LDA L1284 16 HET LDA L1285 16 HET BPH L1286 65 HET U10 L1287 46 HET BCL L1288 66 HET PO4 L1289 5 HET HTO L1290 10 HET HTO L1291 10 HET GOL L1292 6 HET GOL L1293 6 HET GOL L1294 6 HET BCL M1303 66 HET BCL M1304 66 HET LDA M1305 16 HET LDA M1306 16 HET FE M1307 1 HET BPH M1308 65 HET U10 M1309 48 HET SPO M1310 42 HET CDL M1311 81 HET PC1 M1312 43 HET GGD M1313 57 HETNAM GOL GLYCEROL HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM BPH BACTERIOPHEOPHYTIN A HETNAM U10 UBIQUINONE-10 HETNAM PO4 PHOSPHATE ION HETNAM HTO HEPTANE-1,2,3-TRIOL HETNAM FE FE (III) ION HETNAM SPO SPHEROIDENE HETNAM CDL CARDIOLIPIN HETNAM PC1 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM GGD NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL- HETNAM 2 GGD 5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN- HETNAM 3 GGD 2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY] -1-OCTADEC-9- HETNAM 4 GGD ENOYLOXYMETHYL-ETHYL ESTER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN U10 COENZYME Q10 HETSYN CDL DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 CDL PHOSPHO)-1',3'-SN-GLYCEROL HETSYN PC1 3-SN-PHOSPHATIDYLCHOLINE HETSYN GGD GLUCOSYL-GALACTOSYL DIACYL-GLYCEROL FORMUL 4 GOL 7(C3 H8 O3) FORMUL 8 BCL 4(C55 H74 MG N4 O6) FORMUL 9 LDA 5(C14 H31 N O) FORMUL 12 BPH 2(C55 H76 N4 O6) FORMUL 13 U10 2(C59 H90 O4) FORMUL 15 PO4 O4 P 3- FORMUL 16 HTO 2(C7 H16 O3) FORMUL 25 FE FE 3+ FORMUL 28 SPO C41 H60 O FORMUL 29 CDL C81 H156 O17 P2 2- FORMUL 30 PC1 C44 H88 N O8 P FORMUL 31 GGD C52 H94 O15 FORMUL 32 HOH *415(H2 O) HELIX 1 1 ASP H 11 ASN H 35 1 25 HELIX 2 2 ASP H 103 GLY H 108 1 6 HELIX 3 3 VAL H 109 SER H 113 5 5 HELIX 4 4 LYS H 135 ALA H 137 5 3 HELIX 5 5 GLN H 194 VAL H 196 5 3 HELIX 6 6 SER H 209 PHE H 213 5 5 HELIX 7 7 THR H 226 ALA H 244 1 19 HELIX 8 8 ALA H 245 ARG H 248 5 4 HELIX 9 9 GLU L 6 ARG L 10 5 5 HELIX 10 10 VAL L 31 GLY L 57 1 27 HELIX 11 11 ALA L 70 GLY L 74 5 5 HELIX 12 12 PRO L 79 LYS L 82 5 4 HELIX 13 13 GLY L 83 GLY L 112 1 30 HELIX 14 14 TYR L 115 LEU L 133 1 19 HELIX 15 15 LEU L 133 GLY L 140 1 8 HELIX 16 16 ALA L 141 ALA L 145 5 5 HELIX 17 17 TRP L 151 TYR L 164 1 14 HELIX 18 18 ASN L 166 TYR L 169 5 4 HELIX 19 19 ASN L 170 ASN L 199 1 30 HELIX 20 20 THR L 208 GLY L 221 1 14 HELIX 21 21 GLY L 225 ILE L 250 1 26 HELIX 22 22 GLN L 258 TRP L 263 1 6 HELIX 23 23 TRP L 263 LYS L 268 1 6 HELIX 24 24 LEU L 269 ASN L 274 1 6 HELIX 25 25 ASN M 25 ASN M 28 5 4 HELIX 26 26 SER M 36 TRP M 41 1 6 HELIX 27 27 LEU M 52 ALA M 78 1 27 HELIX 28 28 ASN M 81 ASP M 88 1 8 HELIX 29 29 ALA M 98 GLY M 102 5 5 HELIX 30 30 PRO M 108 GLU M 111 5 4 HELIX 31 31 GLY M 112 LEU M 140 1 29 HELIX 32 32 LYS M 144 PHE M 162 1 19 HELIX 33 33 PHE M 162 GLY M 169 1 8 HELIX 34 34 SER M 170 ALA M 174 5 5 HELIX 35 35 GLY M 178 HIS M 193 1 16 HELIX 36 36 ASN M 195 TYR M 198 5 4 HELIX 37 37 ASN M 199 VAL M 226 1 28 HELIX 38 38 SER M 227 GLY M 230 5 4 HELIX 39 39 ARG M 233 ASP M 240 1 8 HELIX 40 40 GLY M 242 GLY M 257 1 16 HELIX 41 41 GLU M 263 LEU M 286 1 24 HELIX 42 42 ASN M 293 ASN M 300 1 8 SHEET 1 HA 2 LYS H 62 LEU H 66 0 SHEET 2 HA 2 GLY H 71 VAL H 75 -1 O GLY H 71 N LEU H 66 SHEET 1 HB 2 LEU H 87 ARG H 89 0 SHEET 2 HB 2 HIS H 98 PRO H 100 -1 O ALA H 99 N ALA H 88 SHEET 1 HC 5 ILE H 131 PRO H 133 0 SHEET 2 HC 5 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 HC 5 PRO H 152 ARG H 154 -1 O VAL H 153 N ALA H 161 SHEET 4 HC 5 VAL H 203 HIS H 204 1 O VAL H 203 N ARG H 154 SHEET 5 HC 5 LYS H 197 VAL H 198 -1 O LYS H 197 N HIS H 204 SHEET 1 HD 4 ILE H 131 PRO H 133 0 SHEET 2 HD 4 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 HD 4 MET H 175 LEU H 183 -1 O MET H 175 N ASP H 170 SHEET 4 HD 4 THR H 188 PRO H 192 -1 O ARG H 189 N VAL H 181 SHEET 1 HE 2 HIS H 141 ALA H 144 0 SHEET 2 HE 2 GLN M 11 ARG M 13 -1 O GLN M 11 N SER H 143 SHEET 1 LA 2 TRP L 25 VAL L 26 0 SHEET 2 LA 2 PHE L 29 TYR L 30 -1 O PHE L 29 N VAL L 26 SHEET 1 LB 2 SER L 65 VAL L 66 0 SHEET 2 LB 2 TYR L 148 GLY L 149 -1 O TYR L 148 N VAL L 66 LINK NE2 HIS L 153 MG BCL L1282 1555 1555 2.07 LINK NE2 HIS L 173 MG BCL L1288 1555 1555 2.27 LINK NE2 HIS L 190 FE FE M1307 1555 1555 2.00 LINK NE2 HIS L 230 FE FE M1307 1555 1555 2.02 LINK NE2 HIS M 182 MG BCL M1303 1555 1555 2.07 LINK NE2 HIS M 202 MG BCL M1304 1555 1555 2.06 LINK NE2 HIS M 219 FE FE M1307 1555 1555 2.02 LINK OE2 GLU M 234 FE FE M1307 1555 1555 2.10 LINK OE1 GLU M 234 FE FE M1307 1555 1555 2.20 LINK NE2 HIS M 266 FE FE M1307 1555 1555 2.01 CISPEP 1 TYR H 40 PRO H 41 0 -0.03 CISPEP 2 VAL H 75 PRO H 76 0 -1.75 CISPEP 3 ARG H 248 LYS H 249 0 -15.47 CISPEP 4 GLY M 48 PRO M 49 0 -4.37 SITE 1 AC1 15 HIS L 168 MET L 174 ILE L 177 SER L 178 SITE 2 AC1 15 THR L 182 LDA L1284 HOH L2075 MET M 122 SITE 3 AC1 15 ILE M 179 HIS M 182 LEU M 183 THR M 186 SITE 4 AC1 15 BCL M1304 BPH M1308 SPO M1310 SITE 1 AC2 21 VAL L 157 TYR L 162 BCL L1288 MET M 122 SITE 2 AC2 21 ALA M 153 LEU M 160 THR M 186 ASN M 187 SITE 3 AC2 21 SER M 190 LEU M 196 PHE M 197 HIS M 202 SITE 4 AC2 21 SER M 205 ILE M 206 TYR M 210 VAL M 276 SITE 5 AC2 21 GLY M 280 ILE M 284 BCL M1303 BPH M1308 SITE 6 AC2 21 PC1 M1312 SITE 1 AC3 17 ILE L 49 TYR L 128 PHE L 146 ILE L 150 SITE 2 AC3 17 HIS L 153 LEU L 154 BPH L1286 BCL L1288 SITE 3 AC3 17 HOH L2113 PHE M 197 GLY M 203 ILE M 206 SITE 4 AC3 17 ALA M 207 TYR M 210 LEU M 214 LDA M1305 SITE 5 AC3 17 U10 M1309 SITE 1 AC4 5 BCL L1282 GOL L1294 GLY M 203 LEU M 204 SITE 2 AC4 5 ALA M 207 SITE 1 AC5 2 SER M 8 TRP M 41 SITE 1 AC6 2 TYR L 148 GOL L1294 SITE 1 AC7 1 BCL M1303 SITE 1 AC8 2 PHE L 179 U10 L1287 SITE 1 AC9 5 HIS L 190 HIS L 230 HIS M 219 GLU M 234 SITE 2 AC9 5 HIS M 266 SITE 1 BC1 15 PHE L 181 LEU L 185 LEU L 189 LEU M 60 SITE 2 BC1 15 GLY M 63 VAL M 126 TRP M 129 THR M 133 SITE 3 BC1 15 THR M 146 PHE M 150 ALA M 153 ALA M 273 SITE 4 BC1 15 THR M 277 BCL M1303 BCL M1304 SITE 1 BC2 18 THR L 38 ALA L 93 PHE L 97 TRP L 100 SITE 2 BC2 18 GLU L 104 ILE L 117 PHE L 121 ALA L 124 SITE 3 BC2 18 TYR L 148 VAL L 241 BCL L1282 BCL L1288 SITE 4 BC2 18 TYR M 210 ALA M 213 LEU M 214 TRP M 252 SITE 5 BC2 18 MET M 256 U10 M1309 SITE 1 BC3 14 GLY L 35 BCL L1282 BPH L1286 HIS M 219 SITE 2 BC3 14 THR M 222 ALA M 248 ALA M 249 TRP M 252 SITE 3 BC3 14 MET M 256 PHE M 258 ASN M 259 ALA M 260 SITE 4 BC3 14 ILE M 265 TRP M 268 SITE 1 BC4 18 THR L 182 LEU L 189 HIS L 190 LEU L 193 SITE 2 BC4 18 GLU L 212 ASP L 213 PHE L 216 TYR L 222 SITE 3 BC4 18 SER L 223 ILE L 224 GLY L 225 THR L 226 SITE 4 BC4 18 ILE L 229 LEU L 232 LDA L1285 HOH L2090 SITE 5 BC4 18 LEU M 47 PC1 M1312 SITE 1 BC5 21 PHE L 97 ALA L 124 ALA L 127 LEU L 131 SITE 2 BC5 21 TRP L 156 VAL L 157 TYR L 162 ASN L 166 SITE 3 BC5 21 PHE L 167 HIS L 168 HIS L 173 ALA L 176 SITE 4 BC5 21 ILE L 177 PHE L 180 SER L 244 CYS L 247 SITE 5 BC5 21 MET L 248 BCL L1282 BPH L1286 TYR M 210 SITE 6 BC5 21 BCL M1304 SITE 1 BC6 12 PHE M 67 ILE M 70 GLY M 71 TRP M 75 SITE 2 BC6 12 SER M 119 TRP M 157 GLY M 161 TRP M 171 SITE 3 BC6 12 TYR M 177 GLY M 178 HIS M 182 BCL M1303 SITE 1 BC7 17 ALA H 16 ILE H 22 PHE H 23 GLY H 26 SITE 2 BC7 17 TYR H 30 GOL H1251 HOH H2002 ASN L 199 SITE 3 BC7 17 PRO L 200 GLY M 143 LYS M 144 HIS M 145 SITE 4 BC7 17 TRP M 148 TRP M 155 ARG M 267 LEU M 278 SITE 5 BC7 17 HOH M2127 SITE 1 BC8 7 VAL L 220 U10 L1287 ARG M 29 SER M 30 SITE 2 BC8 7 GLY M 31 ILE M 50 BCL M1304 SITE 1 BC9 14 GLN H 32 TYR H 40 LEU H 42 ASN H 52 SITE 2 BC9 14 GLY H 54 GOL H1253 ALA L 1 VAL L 26 SITE 3 BC9 14 GLY L 27 PRO L 28 ARG M 253 MET M 256 SITE 4 BC9 14 GLY M 257 PHE M 258 SITE 1 CC1 7 HIS H 126 GLU L 72 TYR L 73 LYS L 82 SITE 2 CC1 7 HOH L2115 THR M 21 HOH M2019 SITE 1 CC2 4 GLN L 87 LEU L 133 TRP L 142 GOL L1293 SITE 1 CC3 1 ILE L 91 SITE 1 CC4 7 GLU H 34 LYS H 62 HOH H2002 ASN L 199 SITE 2 CC4 7 GOL L1292 ARG M 267 CDL M1311 SITE 1 CC5 8 THR H 63 PHE H 64 GOL H1251 HOH H2033 SITE 2 CC5 8 ALA L 198 ASN L 199 PRO L 200 HOH L2116 SITE 1 CC6 5 GLY L 77 ALA L 78 LEU L 80 GLN L 87 SITE 2 CC6 5 HTO L1290 SITE 1 CC7 3 GOL H1254 LDA L1283 LDA M1305 SITE 1 CC8 2 ALA H 25 HOH H2169 SITE 1 CC9 3 TRP H 21 ALA H 25 GGD M1313 SITE 1 DC1 3 TRP H 21 HOH H2172 GOL L1294 CRYST1 138.690 138.690 184.613 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007210 0.004163 0.000000 0.00000 SCALE2 0.000000 0.008326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005417 0.00000