HEADER NUCLEAR PROTEIN 27-OCT-06 2J8Q TITLE CRYSTAL STRUCTURE OF HUMAN CLEAVAGE AND POLYADENYLATION SPECIFICITY TITLE 2 FACTOR 5 (CPSF5) IN COMPLEX WITH A SULPHATE ION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 24-227; COMPND 5 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 25 KDA COMPND 6 SUBUNIT, CPSF 25 KDA SUBUNIT, PRE-MRNA CLEAVAGE FACTOR IM 25 KDA COMPND 7 SUBUNIT, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 21, NUDIX MOTIF COMPND 8 21; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS NUCLEAR PROTEIN, RNA-BINDING, MRNA PROCESSING, PHOSPHORYLATION, KEYWDS 2 3'MRNA CLEAVAGE AND POLYADENYLATION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.MOCHE,P.STENMARK,D.OGG,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS, AUTHOR 2 A.EDWARDS,U.B.ERICSSON,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 B.M.HALLBERG,S.L.HOLMBERG,M.HOGBOM,I.JOHANSSON,T.KARLBERG, AUTHOR 4 U.KOSINSKA,T.KOTENYOVA,A.MAGNUSDOTTIR,M.E.NILSSON,P.NILSSON-EHLE, AUTHOR 5 T.NYMAN,C.PERSSON,J.SAGEMARK,M.SUNDSTROM,J.UPPENBERG,M.UPSTEN, AUTHOR 6 A.G.THORSELL,S.VAN DEN BERG,K.WALLDEN,J.WEIGELT,M.WELIN,P.NORDLUND REVDAT 5 13-DEC-23 2J8Q 1 REMARK REVDAT 4 13-JUL-11 2J8Q 1 VERSN REVDAT 3 24-NOV-09 2J8Q 1 JRNL REVDAT 2 24-FEB-09 2J8Q 1 VERSN REVDAT 1 13-NOV-06 2J8Q 0 JRNL AUTH L.TRESAUGUES,P.STENMARK,H.SCHULER,S.FLODIN,M.WELIN,T.NYMAN, JRNL AUTH 2 M.HAMMARSTROM,M.MOCHE,S.GRASLUND,P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN CLEAVAGE AND POLYADENYLATION JRNL TITL 2 SPECIFIC FACTOR-5 REVEALS A DIMERIC NUDIX PROTEIN WITH A JRNL TITL 3 CONSERVED CATALYTIC SITE. JRNL REF PROTEINS V. 73 1047 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18767156 JRNL DOI 10.1002/PROT.22198 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 22810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.41000 REMARK 3 B22 (A**2) : 1.41000 REMARK 3 B33 (A**2) : -2.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.452 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3381 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4591 ; 1.300 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.915 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.106 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;15.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2588 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1240 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2190 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2071 ; 0.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3254 ; 0.810 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 1.081 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1337 ; 1.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2262 39.0467 9.2662 REMARK 3 T TENSOR REMARK 3 T11: -0.1040 T22: -0.1727 REMARK 3 T33: -0.1573 T12: -0.0230 REMARK 3 T13: 0.0362 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.3377 L22: 1.8914 REMARK 3 L33: 2.8825 L12: 0.4020 REMARK 3 L13: 0.1926 L23: 0.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.1326 S13: -0.2510 REMARK 3 S21: -0.0855 S22: 0.0297 S23: 0.1116 REMARK 3 S31: 0.3611 S32: -0.0948 S33: -0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9956 66.1052 13.5176 REMARK 3 T TENSOR REMARK 3 T11: -0.0427 T22: -0.1778 REMARK 3 T33: -0.1064 T12: -0.0039 REMARK 3 T13: 0.0501 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.2259 L22: 2.8213 REMARK 3 L33: 2.8169 L12: 0.2518 REMARK 3 L13: -0.9778 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 0.0203 S13: 0.5212 REMARK 3 S21: -0.0853 S22: 0.0841 S23: -0.0563 REMARK 3 S31: -0.5270 S32: 0.0327 S33: -0.1638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CL3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17%(W/V)PEG3350, 0.2M AMSO4, 0.1M BIS REMARK 280 TRIS PH 5.2.MIX 1:1UL DROPS OF 9MG/ML PROTEIN WITH WELL SOLUTION REMARK 280 IN RT THEN MOVE TO CR. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.92500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.77500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 GLY A 134 REMARK 465 VAL A 135 REMARK 465 LEU A 136 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 GLU B 16 REMARK 465 ASN B 17 REMARK 465 LEU B 18 REMARK 465 TYR B 19 REMARK 465 PHE B 20 REMARK 465 GLN B 21 REMARK 465 SER B 22 REMARK 465 MET B 23 REMARK 465 TYR B 24 REMARK 465 ILE B 25 REMARK 465 GLN B 26 REMARK 465 GLN B 27 REMARK 465 THR B 28 REMARK 465 GLY B 134 REMARK 465 VAL B 135 REMARK 465 LEU B 136 REMARK 465 GLN B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 100.73 30.34 REMARK 500 THR A 101 -54.64 67.22 REMARK 500 PRO A 159 24.58 -77.77 REMARK 500 LYS B 50 -165.73 -116.82 REMARK 500 THR B 101 -70.48 61.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 27 THR A 28 76.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1228 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CL3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CLEAVAGE AND POLYADENYLATION SPECIFICITY REMARK 900 FACTOR 5 (CPSF5) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT HAS AN N-TERMINAL HIS TAG DBREF 2J8Q A 1 23 PDB 2J8Q 2J8Q 1 23 DBREF 2J8Q A 24 227 UNP O43809 CPSF5_HUMAN 24 227 DBREF 2J8Q B 1 23 PDB 2J8Q 2J8Q 1 23 DBREF 2J8Q B 24 227 UNP O43809 CPSF5_HUMAN 24 227 SEQRES 1 A 227 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 227 GLY THR GLU ASN LEU TYR PHE GLN SER MET TYR ILE GLN SEQRES 3 A 227 GLN THR LYS PRO LEU THR LEU GLU ARG THR ILE ASN LEU SEQRES 4 A 227 TYR PRO LEU THR ASN TYR THR PHE GLY THR LYS GLU PRO SEQRES 5 A 227 LEU TYR GLU LYS ASP SER SER VAL ALA ALA ARG PHE GLN SEQRES 6 A 227 ARG MET ARG GLU GLU PHE ASP LYS ILE GLY MET ARG ARG SEQRES 7 A 227 THR VAL GLU GLY VAL LEU ILE VAL HIS GLU HIS ARG LEU SEQRES 8 A 227 PRO HIS VAL LEU LEU LEU GLN LEU GLY THR THR PHE PHE SEQRES 9 A 227 LYS LEU PRO GLY GLY GLU LEU ASN PRO GLY GLU ASP GLU SEQRES 10 A 227 VAL GLU GLY LEU LYS ARG LEU MET THR GLU ILE LEU GLY SEQRES 11 A 227 ARG GLN ASP GLY VAL LEU GLN ASP TRP VAL ILE ASP ASP SEQRES 12 A 227 CYS ILE GLY ASN TRP TRP ARG PRO ASN PHE GLU PRO PRO SEQRES 13 A 227 GLN TYR PRO TYR ILE PRO ALA HIS ILE THR LYS PRO LYS SEQRES 14 A 227 GLU HIS LYS LYS LEU PHE LEU VAL GLN LEU GLN GLU LYS SEQRES 15 A 227 ALA LEU PHE ALA VAL PRO LYS ASN TYR LYS LEU VAL ALA SEQRES 16 A 227 ALA PRO LEU PHE GLU LEU TYR ASP ASN ALA PRO GLY TYR SEQRES 17 A 227 GLY PRO ILE ILE SER SER LEU PRO GLN LEU LEU SER ARG SEQRES 18 A 227 PHE ASN PHE ILE TYR ASN SEQRES 1 B 227 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 227 GLY THR GLU ASN LEU TYR PHE GLN SER MET TYR ILE GLN SEQRES 3 B 227 GLN THR LYS PRO LEU THR LEU GLU ARG THR ILE ASN LEU SEQRES 4 B 227 TYR PRO LEU THR ASN TYR THR PHE GLY THR LYS GLU PRO SEQRES 5 B 227 LEU TYR GLU LYS ASP SER SER VAL ALA ALA ARG PHE GLN SEQRES 6 B 227 ARG MET ARG GLU GLU PHE ASP LYS ILE GLY MET ARG ARG SEQRES 7 B 227 THR VAL GLU GLY VAL LEU ILE VAL HIS GLU HIS ARG LEU SEQRES 8 B 227 PRO HIS VAL LEU LEU LEU GLN LEU GLY THR THR PHE PHE SEQRES 9 B 227 LYS LEU PRO GLY GLY GLU LEU ASN PRO GLY GLU ASP GLU SEQRES 10 B 227 VAL GLU GLY LEU LYS ARG LEU MET THR GLU ILE LEU GLY SEQRES 11 B 227 ARG GLN ASP GLY VAL LEU GLN ASP TRP VAL ILE ASP ASP SEQRES 12 B 227 CYS ILE GLY ASN TRP TRP ARG PRO ASN PHE GLU PRO PRO SEQRES 13 B 227 GLN TYR PRO TYR ILE PRO ALA HIS ILE THR LYS PRO LYS SEQRES 14 B 227 GLU HIS LYS LYS LEU PHE LEU VAL GLN LEU GLN GLU LYS SEQRES 15 B 227 ALA LEU PHE ALA VAL PRO LYS ASN TYR LYS LEU VAL ALA SEQRES 16 B 227 ALA PRO LEU PHE GLU LEU TYR ASP ASN ALA PRO GLY TYR SEQRES 17 B 227 GLY PRO ILE ILE SER SER LEU PRO GLN LEU LEU SER ARG SEQRES 18 B 227 PHE ASN PHE ILE TYR ASN HET SO4 A1228 5 HET SO4 B1228 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *129(H2 O) HELIX 1 1 SER A 59 GLY A 75 1 17 HELIX 2 2 ASP A 116 GLY A 130 1 15 HELIX 3 3 LEU A 198 TYR A 202 1 5 HELIX 4 4 ASN A 204 SER A 213 1 10 HELIX 5 5 SER A 214 SER A 220 1 7 HELIX 6 6 SER B 59 ILE B 74 1 16 HELIX 7 7 ASP B 116 GLY B 130 1 15 HELIX 8 8 LEU B 198 TYR B 202 1 5 HELIX 9 9 ASN B 204 SER B 213 1 10 HELIX 10 10 SER B 214 SER B 220 1 7 SHEET 1 AA 2 THR A 36 LEU A 39 0 SHEET 2 AA 2 ASN A 223 TYR A 226 1 O ASN A 223 N ILE A 37 SHEET 1 AB 2 TYR A 45 LYS A 50 0 SHEET 2 AB 2 ALA A 183 PRO A 188 1 O ALA A 183 N THR A 46 SHEET 1 AC 3 PHE A 103 LYS A 105 0 SHEET 2 AC 3 LEU A 91 LEU A 99 -1 O LEU A 97 N LYS A 105 SHEET 3 AC 3 ARG A 77 GLU A 88 -1 O LEU A 84 N LEU A 95 SHEET 1 AD 3 PHE A 103 LYS A 105 0 SHEET 2 AD 3 LEU A 91 LEU A 99 -1 O LEU A 97 N LYS A 105 SHEET 3 AD 3 TYR A 191 PRO A 197 -1 O LYS A 192 N GLN A 98 SHEET 1 BA 2 ARG B 35 LEU B 39 0 SHEET 2 BA 2 PHE B 222 TYR B 226 1 O ASN B 223 N ILE B 37 SHEET 1 BB 2 TYR B 45 LYS B 50 0 SHEET 2 BB 2 ALA B 183 PRO B 188 1 O ALA B 183 N THR B 46 SHEET 1 BC 3 PHE B 104 LYS B 105 0 SHEET 2 BC 3 PRO B 92 GLN B 98 -1 O LEU B 97 N LYS B 105 SHEET 3 BC 3 ARG B 77 HIS B 87 -1 O LEU B 84 N LEU B 95 SHEET 1 BD 3 PHE B 104 LYS B 105 0 SHEET 2 BD 3 PRO B 92 GLN B 98 -1 O LEU B 97 N LYS B 105 SHEET 3 BD 3 LYS B 192 PRO B 197 -1 O LYS B 192 N GLN B 98 SITE 1 AC1 5 ARG A 63 ARG A 150 GLN A 157 LYS A 172 SITE 2 AC1 5 HOH A2071 SITE 1 AC2 4 ARG B 63 ARG B 150 GLN B 157 LYS B 172 CRYST1 86.400 86.400 139.700 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007158 0.00000 MTRIX1 1 -0.994500 0.029490 -0.100600 -6.49300 1 MTRIX2 1 0.007481 -0.937200 -0.348700 105.20000 1 MTRIX3 1 -0.104500 -0.347600 0.931800 18.43000 1