HEADER HYDROLASE/INHIBITOR 31-OCT-06 2J8X TITLE EPSTEIN-BARR VIRUS URACIL-DNA GLYCOSYLASE IN COMPLEX WITH UGI FROM TITLE 2 PBS-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: URACIL-DNA GLYCOSYLASE DOMAIN, RESIDUES 25-255; COMPND 5 EC: 3.2.2.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: URACIL-DNA GLYCOSYLASE INHIBITOR; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS; SOURCE 3 ORGANISM_COMMON: HHV-4; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 STRAIN: B95-8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PBS2; SOURCE 13 ORGANISM_TAXID: 10684; SOURCE 14 STRAIN: PBS-2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PRSETB KEYWDS HYDROLASE-INHIBITOR COMPLEX, EBV, DNA REPAIR, LYTIC PROTEIN, EPSTEIN- KEYWDS 2 BARR VIRUS, URACIL- DNA GLYCOSYLASE, HYDROLASE, URACIL-DNA KEYWDS 3 GLYCOSYLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR T.GEOUI,M.BUISSON,N.TARBOURIECH,W.P.BURMEISTER REVDAT 6 13-DEC-23 2J8X 1 REMARK REVDAT 5 08-MAY-19 2J8X 1 REMARK REVDAT 4 13-JUL-11 2J8X 1 VERSN REVDAT 3 24-FEB-09 2J8X 1 VERSN REVDAT 2 06-FEB-07 2J8X 1 JRNL REVDAT 1 13-DEC-06 2J8X 0 JRNL AUTH T.GEOUI,M.BUISSON,N.TARBOURIECH,W.P.BURMEISTER JRNL TITL NEW INSIGHTS ON THE ROLE OF THE GAMMA-HERPESVIRUS URACIL-DNA JRNL TITL 2 GLYCOSYLASE LEUCINE LOOP REVEALED BY THE STRUCTURE OF THE JRNL TITL 3 EPSTEIN-BARR VIRUS ENZYME IN COMPLEX WITH AN INHIBITOR JRNL TITL 4 PROTEIN. JRNL REF J.MOL.BIOL. V. 366 117 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17157317 JRNL DOI 10.1016/J.JMB.2006.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 27583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1954 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 389 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5032 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6839 ; 0.829 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 4.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;34.584 ;24.955 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;14.561 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 766 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3800 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2392 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3387 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 417 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3187 ; 3.169 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5033 ; 4.302 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2087 ; 2.382 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1806 ; 3.186 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9025 19.9616 119.2076 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: -0.0438 REMARK 3 T33: -0.0134 T12: -0.0091 REMARK 3 T13: 0.0041 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4261 L22: 0.5186 REMARK 3 L33: 0.6164 L12: 0.0100 REMARK 3 L13: 0.2094 L23: -0.0391 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0263 S13: -0.0433 REMARK 3 S21: 0.0050 S22: 0.0216 S23: -0.0510 REMARK 3 S31: 0.0256 S32: -0.0157 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8667 42.0522 117.1613 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: -0.0454 REMARK 3 T33: -0.0195 T12: -0.0467 REMARK 3 T13: 0.0121 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.8462 L22: 0.7867 REMARK 3 L33: 1.7435 L12: -0.3719 REMARK 3 L13: -0.4012 L23: -0.2878 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.0321 S13: -0.0049 REMARK 3 S21: -0.0365 S22: 0.0594 S23: -0.0521 REMARK 3 S31: -0.1396 S32: 0.0270 S33: -0.1114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 27 C 255 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3957 36.8914 88.6013 REMARK 3 T TENSOR REMARK 3 T11: -0.0293 T22: -0.0023 REMARK 3 T33: -0.0492 T12: -0.0249 REMARK 3 T13: -0.0706 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 1.9152 L22: 0.6684 REMARK 3 L33: 1.1785 L12: -0.0979 REMARK 3 L13: 0.5031 L23: -0.6750 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: 0.3727 S13: 0.2146 REMARK 3 S21: 0.0898 S22: 0.0140 S23: -0.0012 REMARK 3 S31: -0.0111 S32: -0.0082 S33: 0.1494 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 84 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5208 16.9329 78.2506 REMARK 3 T TENSOR REMARK 3 T11: -0.0253 T22: 0.1904 REMARK 3 T33: -0.1184 T12: 0.0516 REMARK 3 T13: -0.0603 T23: -0.1739 REMARK 3 L TENSOR REMARK 3 L11: 2.9976 L22: 2.7215 REMARK 3 L33: 1.6199 L12: -0.3970 REMARK 3 L13: 0.2237 L23: -0.1139 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: 0.8086 S13: -0.4081 REMARK 3 S21: -0.0616 S22: -0.1390 S23: 0.1944 REMARK 3 S31: 0.1932 S32: 0.5034 S33: -0.1624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 67.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 5.810 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.84 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LQM REMARK 200 REMARK 200 REMARK: E.COLI UNG-UGI COMPLEX USED FOR MOLECULAR REPLACEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION METHOD. REMARK 280 PROTEIN IN 100 MM NACL, 20 MM TRIS-HCL PH 7.5 AND 10 MM DTT AT REMARK 280 30 TO 50 MG/ML. RESERVOIR SOLUTION OF 20% PEG 3350 AND 0.05 M REMARK 280 NH4CL., PH 7.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 134.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.20300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.47100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.20300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.47100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.56500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.20300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.47100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.56500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.20300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.47100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 MET B 1 REMARK 465 GLY C 25 REMARK 465 GLU C 26 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASN D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 79 O HOH B 2052 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 -15.89 70.10 REMARK 500 PRO A 66 -162.13 -79.41 REMARK 500 GLN A 90 -87.31 -99.90 REMARK 500 PHE A 103 -35.66 71.51 REMARK 500 SER A 211 -178.98 -170.71 REMARK 500 LEU C 29 -4.95 75.21 REMARK 500 GLN C 90 -73.78 -94.13 REMARK 500 ASN C 99 23.42 -142.18 REMARK 500 PHE C 103 -35.43 72.67 REMARK 500 PRO C 127 -17.06 -49.22 REMARK 500 THR C 222 9.72 -61.75 REMARK 500 ARG C 223 12.44 57.38 REMARK 500 LYS C 224 48.37 -150.48 REMARK 500 SER D 39 -167.63 -160.45 REMARK 500 TYR D 65 54.79 20.51 REMARK 500 ASP D 74 172.74 -56.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2027 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE B1085 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE D1085 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EUI RELATED DB: PDB REMARK 900 ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITHURACIL-DNA REMARK 900 GLYCOSYLASE INHIBITOR PROTEIN REMARK 900 RELATED ID: 1LQG RELATED DB: PDB REMARK 900 ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA REMARK 900 GLYCOSYLASE INHIBITOR PROTEIN REMARK 900 RELATED ID: 1LQM RELATED DB: PDB REMARK 900 ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA REMARK 900 GLYCOSYLASE INHIBITOR PROTEIN REMARK 900 RELATED ID: 1UDI RELATED DB: PDB REMARK 900 RELATED ID: 1UGH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE INCOMPLEX WITH A REMARK 900 PROTEIN INHIBITOR : PROTEIN MIMICRY OF DNA REMARK 900 RELATED ID: 1UGI RELATED DB: PDB REMARK 900 URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN REMARK 900 RELATED ID: 1UUG RELATED DB: PDB REMARK 900 ESCHERICHIA COLI URACIL-DEOXYRIBONUCLEIC ACID GLYCOSYLASE:INHIBITOR REMARK 900 COMPLEX WITH WILD-TYPE UDG AND WILD-TYPE UGI REMARK 900 RELATED ID: 2UGI RELATED DB: PDB REMARK 900 PROTEIN MIMICRY OF DNA FROM CRYSTAL STRUCTURES OF THEURACIL REMARK 900 GLYCOSYLASE INHIBITOR PROTEIN AND ITS COMPLEX WITHESCHERICHIA COLI REMARK 900 URACIL-DNA GLYCOSYLASE REMARK 900 RELATED ID: 2UUG RELATED DB: PDB REMARK 900 ESCHERICHIA COLI URACIL-DEOXYRIBONUCLEIC ACID GLYCOSYLASE:INHIBITOR REMARK 900 COMPLEX WITH H187D MUTANT UDG AND WILD-TYPE UGI DBREF 2J8X A 25 255 UNP Q777D9 Q777D9_EBVG 25 255 DBREF 2J8X B 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 2J8X C 25 255 UNP Q777D9 Q777D9_EBVG 25 255 DBREF 2J8X D 1 84 UNP P14739 UNGI_BPPB2 1 84 SEQRES 1 A 231 GLY GLU ASN LEU LEU LEU PRO ASP LEU TRP LEU ASP PHE SEQRES 2 A 231 LEU GLN LEU SER PRO ILE PHE GLN ARG LYS LEU ALA ALA SEQRES 3 A 231 VAL ILE ALA CYS VAL ARG ARG LEU ARG THR GLN ALA THR SEQRES 4 A 231 VAL TYR PRO GLU GLU ASP MET CYS MET ALA TRP ALA ARG SEQRES 5 A 231 PHE CYS ASP PRO SER ASP ILE LYS VAL VAL ILE LEU GLY SEQRES 6 A 231 GLN ASP PRO TYR HIS GLY GLY GLN ALA ASN GLY LEU ALA SEQRES 7 A 231 PHE SER VAL ALA TYR GLY PHE PRO VAL PRO PRO SER LEU SEQRES 8 A 231 ARG ASN ILE TYR ALA GLU LEU HIS ARG SER LEU PRO GLU SEQRES 9 A 231 PHE SER PRO PRO ASP HIS GLY CYS LEU ASP ALA TRP ALA SEQRES 10 A 231 SER GLN GLY VAL LEU LEU LEU ASN THR ILE LEU THR VAL SEQRES 11 A 231 GLN LYS GLY LYS PRO GLY SER HIS ALA ASP ILE GLY TRP SEQRES 12 A 231 ALA TRP PHE THR ASP HIS VAL ILE SER LEU LEU SER GLU SEQRES 13 A 231 ARG LEU LYS ALA CYS VAL PHE MET LEU TRP GLY ALA LYS SEQRES 14 A 231 ALA GLY ASP LYS ALA SER LEU ILE ASN SER LYS LYS HIS SEQRES 15 A 231 LEU VAL LEU THR SER GLN HIS PRO SER PRO LEU ALA GLN SEQRES 16 A 231 ASN SER THR ARG LYS SER ALA GLN GLN LYS PHE LEU GLY SEQRES 17 A 231 ASN ASN HIS PHE VAL LEU ALA ASN ASN PHE LEU ARG GLU SEQRES 18 A 231 LYS GLY LEU GLY GLU ILE ASP TRP ARG LEU SEQRES 1 B 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 B 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 B 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 B 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 B 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 B 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 B 84 ASN LYS ILE LYS MET LEU SEQRES 1 C 231 GLY GLU ASN LEU LEU LEU PRO ASP LEU TRP LEU ASP PHE SEQRES 2 C 231 LEU GLN LEU SER PRO ILE PHE GLN ARG LYS LEU ALA ALA SEQRES 3 C 231 VAL ILE ALA CYS VAL ARG ARG LEU ARG THR GLN ALA THR SEQRES 4 C 231 VAL TYR PRO GLU GLU ASP MET CYS MET ALA TRP ALA ARG SEQRES 5 C 231 PHE CYS ASP PRO SER ASP ILE LYS VAL VAL ILE LEU GLY SEQRES 6 C 231 GLN ASP PRO TYR HIS GLY GLY GLN ALA ASN GLY LEU ALA SEQRES 7 C 231 PHE SER VAL ALA TYR GLY PHE PRO VAL PRO PRO SER LEU SEQRES 8 C 231 ARG ASN ILE TYR ALA GLU LEU HIS ARG SER LEU PRO GLU SEQRES 9 C 231 PHE SER PRO PRO ASP HIS GLY CYS LEU ASP ALA TRP ALA SEQRES 10 C 231 SER GLN GLY VAL LEU LEU LEU ASN THR ILE LEU THR VAL SEQRES 11 C 231 GLN LYS GLY LYS PRO GLY SER HIS ALA ASP ILE GLY TRP SEQRES 12 C 231 ALA TRP PHE THR ASP HIS VAL ILE SER LEU LEU SER GLU SEQRES 13 C 231 ARG LEU LYS ALA CYS VAL PHE MET LEU TRP GLY ALA LYS SEQRES 14 C 231 ALA GLY ASP LYS ALA SER LEU ILE ASN SER LYS LYS HIS SEQRES 15 C 231 LEU VAL LEU THR SER GLN HIS PRO SER PRO LEU ALA GLN SEQRES 16 C 231 ASN SER THR ARG LYS SER ALA GLN GLN LYS PHE LEU GLY SEQRES 17 C 231 ASN ASN HIS PHE VAL LEU ALA ASN ASN PHE LEU ARG GLU SEQRES 18 C 231 LYS GLY LEU GLY GLU ILE ASP TRP ARG LEU SEQRES 1 D 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 D 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 D 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 D 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 D 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 D 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 D 84 ASN LYS ILE LYS MET LEU HET URE B1085 4 HET URE D1085 4 HETNAM URE UREA FORMUL 5 URE 2(C H4 N2 O) FORMUL 7 HOH *389(H2 O) HELIX 1 1 PRO A 31 GLN A 39 1 9 HELIX 2 2 SER A 41 THR A 60 1 20 HELIX 3 3 MET A 72 ARG A 76 5 5 HELIX 4 4 ASP A 79 ILE A 83 5 5 HELIX 5 5 PRO A 112 LEU A 126 1 15 HELIX 6 6 LEU A 137 SER A 142 1 6 HELIX 7 7 GLY A 166 LEU A 182 1 17 HELIX 8 8 GLY A 191 ASP A 196 1 6 HELIX 9 9 LYS A 197 ILE A 201 5 5 HELIX 10 10 SER A 215 SER A 221 5 7 HELIX 11 11 ASN A 234 LYS A 246 1 13 HELIX 12 12 ASN B 3 GLY B 13 1 11 HELIX 13 13 LEU B 25 GLY B 34 1 10 HELIX 14 14 PRO C 31 GLN C 39 1 9 HELIX 15 15 SER C 41 ARG C 59 1 19 HELIX 16 16 MET C 72 ARG C 76 5 5 HELIX 17 17 ASP C 79 ILE C 83 5 5 HELIX 18 18 PRO C 112 LEU C 126 1 15 HELIX 19 19 LEU C 137 GLN C 143 1 7 HELIX 20 20 GLY C 166 LEU C 182 1 17 HELIX 21 21 GLY C 191 ASP C 196 1 6 HELIX 22 22 LYS C 197 ILE C 201 5 5 HELIX 23 23 SER C 215 SER C 221 5 7 HELIX 24 24 ASN C 234 LYS C 246 1 13 HELIX 25 25 LEU D 4 GLY D 13 1 10 HELIX 26 26 LEU D 25 GLY D 34 1 10 SHEET 1 AA 2 VAL A 64 TYR A 65 0 SHEET 2 AA 2 VAL A 154 GLN A 155 -1 O VAL A 154 N TYR A 65 SHEET 1 AB 4 VAL A 145 ASN A 149 0 SHEET 2 AB 4 VAL A 85 GLY A 89 1 O VAL A 85 N LEU A 146 SHEET 3 AB 4 VAL A 186 TRP A 190 1 O VAL A 186 N VAL A 86 SHEET 4 AB 4 LEU A 207 SER A 211 1 O LEU A 207 N PHE A 187 SHEET 1 BA 5 GLU B 20 MET B 24 0 SHEET 2 BA 5 ILE B 41 ASP B 48 -1 O ILE B 41 N MET B 24 SHEET 3 BA 5 GLU B 53 SER B 60 -1 O GLU B 53 N ASP B 48 SHEET 4 BA 5 PRO B 67 GLN B 73 -1 N TRP B 68 O LEU B 58 SHEET 5 BA 5 ASN B 79 MET B 83 -1 O LYS B 80 N ILE B 72 SHEET 1 CA 2 VAL C 64 TYR C 65 0 SHEET 2 CA 2 VAL C 154 GLN C 155 -1 O VAL C 154 N TYR C 65 SHEET 1 CB 4 VAL C 145 ASN C 149 0 SHEET 2 CB 4 VAL C 85 GLY C 89 1 O VAL C 85 N LEU C 146 SHEET 3 CB 4 VAL C 186 TRP C 190 1 O VAL C 186 N VAL C 86 SHEET 4 CB 4 LEU C 207 SER C 211 1 O LEU C 207 N PHE C 187 SHEET 1 DA 5 GLU D 20 MET D 24 0 SHEET 2 DA 5 ILE D 41 ASP D 48 -1 O ILE D 41 N MET D 24 SHEET 3 DA 5 GLU D 53 SER D 60 -1 O GLU D 53 N ASP D 48 SHEET 4 DA 5 PRO D 67 GLN D 73 -1 N TRP D 68 O LEU D 58 SHEET 5 DA 5 ASN D 79 MET D 83 -1 O LYS D 80 N ILE D 72 CISPEP 1 TYR A 65 PRO A 66 0 -11.85 CISPEP 2 ALA B 62 PRO B 63 0 -0.53 CISPEP 3 TYR C 65 PRO C 66 0 -5.38 CISPEP 4 ALA D 62 PRO D 63 0 2.29 SITE 1 AC1 3 GLY A 160 ALA A 163 ASP B 61 SITE 1 AC2 3 GLY C 160 ALA C 163 ASP D 61 CRYST1 62.406 82.942 269.130 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003716 0.00000 MTRIX1 1 0.896536 -0.049620 -0.440184 34.37600 1 MTRIX2 1 0.141372 -0.909691 0.390482 8.33200 1 MTRIX3 1 -0.419807 -0.412311 -0.808555 193.96000 1 MTRIX1 2 0.881249 -0.074540 -0.466737 38.47400 1 MTRIX2 2 0.145511 -0.896739 0.417953 4.51700 1 MTRIX3 2 -0.449696 -0.436236 -0.779404 191.55300 1