HEADER OXIDOREDUCTASE 31-OCT-06 2J8Z TITLE CRYSTAL STRUCTURE OF HUMAN P53 INDUCIBLE OXIDOREDUCTASE (TP53I3,PIG3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINONE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUMOR PROTEIN P53-INDUCIBLE PROTEIN 3, P53-INDUCED PROTEIN COMPND 5 3; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS MEDIUM-CHAIN DEHYDROGENASE- REDUCTASES, OXIDOREDUCTASE, QUINONE KEYWDS 2 OXIDOREDUCTASE, OXIDATIVE STRESS RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,N.SHAFQAT,J.DEBRECZENI,C.JOHANSSON,A.HARONITI,O.GILEADI, AUTHOR 2 C.H.ARROWSMITH,A.EDWARDS,J.WEIGELT,M.SUNDSTROM,F.VON DELFT,S.PORTE, AUTHOR 3 I.FITA,J.PARES,X.PARES,U.OPPERMANN REVDAT 6 13-DEC-23 2J8Z 1 REMARK REVDAT 5 13-JUL-11 2J8Z 1 VERSN REVDAT 4 23-JUN-09 2J8Z 1 JRNL REMARK REVDAT 3 21-APR-09 2J8Z 1 JRNL REMARK REVDAT 2 24-FEB-09 2J8Z 1 VERSN REVDAT 1 06-NOV-06 2J8Z 0 JRNL AUTH S.PORTE,E.VALENCIA,E.A.YAKOVTSEVA,E.BORRAS,N.SHAFQAT, JRNL AUTH 2 J.E.DEBRECZENY,A.C.W.PIKE,U.OPPERMANN,J.FARRES,I.FITA, JRNL AUTH 3 X.PARES JRNL TITL THREE-DIMENSIONAL STRUCTURE AND ENZYMATIC FUNCTION OF JRNL TITL 2 PROAPOPTOTIC HUMAN P53-INDUCIBLE QUINONE OXIDOREDUCTASE JRNL TITL 3 PIG3. JRNL REF J.BIOL.CHEM. V. 284 17194 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19349281 JRNL DOI 10.1074/JBC.M109.001800 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 669 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.93000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -3.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.519 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2444 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1558 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3339 ; 1.302 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3805 ; 0.810 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;39.032 ;24.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;15.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2756 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 600 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1770 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1226 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1369 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.107 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.052 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 0.407 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2566 ; 0.671 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 1.063 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 1.640 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0763 26.1428 -30.2707 REMARK 3 T TENSOR REMARK 3 T11: -0.3136 T22: 0.6455 REMARK 3 T33: 0.1783 T12: -0.2683 REMARK 3 T13: 0.0239 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.7446 L22: 6.5936 REMARK 3 L33: 12.1215 L12: 1.0386 REMARK 3 L13: -0.3461 L23: -1.9543 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.0543 S13: 0.3203 REMARK 3 S21: -0.2538 S22: -0.3507 S23: -2.1600 REMARK 3 S31: -0.7295 S32: 1.8250 S33: 0.2337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5551 16.9047 -25.0556 REMARK 3 T TENSOR REMARK 3 T11: -0.3632 T22: 0.3844 REMARK 3 T33: 0.0105 T12: 0.0254 REMARK 3 T13: -0.0875 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.3598 L22: 5.2107 REMARK 3 L33: 6.8838 L12: 1.2855 REMARK 3 L13: -0.2109 L23: -2.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.1296 S12: -0.2704 S13: -0.3187 REMARK 3 S21: 0.0911 S22: 0.0193 S23: -0.7947 REMARK 3 S31: 0.5254 S32: 1.2113 S33: 0.1103 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1987 23.7717 -12.8255 REMARK 3 T TENSOR REMARK 3 T11: -0.3939 T22: 0.3312 REMARK 3 T33: -0.1089 T12: 0.0034 REMARK 3 T13: -0.1390 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.6706 L22: 0.5259 REMARK 3 L33: 10.6815 L12: -0.5380 REMARK 3 L13: -1.8113 L23: 1.1555 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0414 S13: 0.0242 REMARK 3 S21: 0.1440 S22: -0.0573 S23: -0.2085 REMARK 3 S31: -0.4640 S32: -0.8586 S33: 0.0652 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2565 18.2356 -26.3616 REMARK 3 T TENSOR REMARK 3 T11: -0.3352 T22: 0.1003 REMARK 3 T33: -0.1675 T12: -0.0180 REMARK 3 T13: -0.0916 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.9715 L22: 4.6456 REMARK 3 L33: 7.4476 L12: 0.5646 REMARK 3 L13: -0.4441 L23: -0.3382 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: 0.1280 S13: -0.1363 REMARK 3 S21: -0.2656 S22: 0.0178 S23: -0.1826 REMARK 3 S31: 0.3745 S32: 0.2356 S33: 0.1420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.580 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.22M LITHIUM SULPHATE, 0.1M SODIUM REMARK 280 ACETATE PH4.0, 45% PEG300, PH 4.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 236.94750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.98250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 157.96500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.98250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 236.94750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.86000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLY A 79 REMARK 465 GLU A 293 REMARK 465 GLY A 294 REMARK 465 PRO A 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 3 CD1 CD2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 14 CD OE1 OE2 REMARK 470 TYR A 17 OH REMARK 470 LYS A 19 CE NZ REMARK 470 GLU A 20 CD OE1 OE2 REMARK 470 SER A 25 OG REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 VAL A 31 CG1 CG2 REMARK 470 LYS A 34 CE NZ REMARK 470 MET A 46 CE REMARK 470 ASN A 60 CG OD1 ND2 REMARK 470 VAL A 70 CG1 CG2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 LEU A 73 CD1 CD2 REMARK 470 GLN A 78 C O CB CG CD OE1 NE2 REMARK 470 HIS A 80 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ILE A 83 CG1 CG2 CD1 REMARK 470 LEU A 107 CD1 CD2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LEU A 116 CD1 CD2 REMARK 470 MET A 164 CE REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 LYS A 204 CD CE NZ REMARK 470 LYS A 207 CD CE NZ REMARK 470 TYR A 222 OH REMARK 470 LYS A 225 CE NZ REMARK 470 LYS A 254 CE NZ REMARK 470 PHE A 257 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLN A 276 OE1 NE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 ARG A 297 CZ NH1 NH2 REMARK 470 LEU A 299 CD1 CD2 REMARK 470 ARG A 304 CZ NH1 NH2 REMARK 470 GLU A 313 CD OE1 OE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 319 OE1 OE2 REMARK 470 LYS A 322 CD CE NZ REMARK 470 LYS A 326 NZ REMARK 470 ILE A 327 CD1 REMARK 470 LEU A 329 CD1 CD2 REMARK 470 GLU A 330 OE1 OE2 REMARK 470 LEU A 331 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 52 75.30 -118.99 REMARK 500 VAL A 70 102.82 -53.53 REMARK 500 ASP A 303 -64.57 -94.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OBY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN P53 INDUCIBLE OXIDOREDUCTASE (TP53I3, REMARK 900 PIG3) DBREF 2J8Z A -20 1 PDB 2J8Z 2J8Z -20 1 DBREF 2J8Z A 2 333 UNP Q53FA7 QORX_HUMAN 1 332 SEQRES 1 A 354 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 354 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ALA VAL SEQRES 3 A 354 HIS PHE ASP LYS PRO GLY GLY PRO GLU ASN LEU TYR VAL SEQRES 4 A 354 LYS GLU VAL ALA LYS PRO SER PRO GLY GLU GLY GLU VAL SEQRES 5 A 354 LEU LEU LYS VAL ALA ALA SER ALA LEU ASN ARG ALA ASP SEQRES 6 A 354 LEU MET GLN ARG GLN GLY GLN TYR ASP PRO PRO PRO GLY SEQRES 7 A 354 ALA SER ASN ILE LEU GLY LEU GLU ALA SER GLY HIS VAL SEQRES 8 A 354 ALA GLU LEU GLY PRO GLY CYS GLN GLY HIS TRP LYS ILE SEQRES 9 A 354 GLY ASP THR ALA MET ALA LEU LEU PRO GLY GLY GLY GLN SEQRES 10 A 354 ALA GLN TYR VAL THR VAL PRO GLU GLY LEU LEU MET PRO SEQRES 11 A 354 ILE PRO GLU GLY LEU THR LEU THR GLN ALA ALA ALA ILE SEQRES 12 A 354 PRO GLU ALA TRP LEU THR ALA PHE GLN LEU LEU HIS LEU SEQRES 13 A 354 VAL GLY ASN VAL GLN ALA GLY ASP TYR VAL LEU ILE HIS SEQRES 14 A 354 ALA GLY LEU SER GLY VAL GLY THR ALA ALA ILE GLN LEU SEQRES 15 A 354 THR ARG MET ALA GLY ALA ILE PRO LEU VAL THR ALA GLY SEQRES 16 A 354 SER GLN LYS LYS LEU GLN MET ALA GLU LYS LEU GLY ALA SEQRES 17 A 354 ALA ALA GLY PHE ASN TYR LYS LYS GLU ASP PHE SER GLU SEQRES 18 A 354 ALA THR LEU LYS PHE THR LYS GLY ALA GLY VAL ASN LEU SEQRES 19 A 354 ILE LEU ASP CYS ILE GLY GLY SER TYR TRP GLU LYS ASN SEQRES 20 A 354 VAL ASN CYS LEU ALA LEU ASP GLY ARG TRP VAL LEU TYR SEQRES 21 A 354 GLY LEU MET GLY GLY GLY ASP ILE ASN GLY PRO LEU PHE SEQRES 22 A 354 SER LYS LEU LEU PHE LYS ARG GLY SER LEU ILE THR SER SEQRES 23 A 354 LEU LEU ARG SER ARG ASP ASN LYS TYR LYS GLN MET LEU SEQRES 24 A 354 VAL ASN ALA PHE THR GLU GLN ILE LEU PRO HIS PHE SER SEQRES 25 A 354 THR GLU GLY PRO GLN ARG LEU LEU PRO VAL LEU ASP ARG SEQRES 26 A 354 ILE TYR PRO VAL THR GLU ILE GLN GLU ALA HIS LYS TYR SEQRES 27 A 354 MET GLU ALA ASN LYS ASN ILE GLY LYS ILE VAL LEU GLU SEQRES 28 A 354 LEU PRO GLN HET NAP A1334 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *11(H2 O) HELIX 1 1 GLY A 12 GLU A 14 5 3 HELIX 2 2 ASN A 41 GLN A 49 1 9 HELIX 3 3 THR A 115 ALA A 120 1 6 HELIX 4 4 ILE A 122 HIS A 134 1 13 HELIX 5 5 SER A 152 ALA A 165 1 14 HELIX 6 6 SER A 175 GLY A 186 1 12 HELIX 7 7 ASP A 197 THR A 206 1 10 HELIX 8 8 GLY A 219 SER A 221 5 3 HELIX 9 9 TYR A 222 CYS A 229 1 8 HELIX 10 10 PRO A 250 LYS A 258 1 9 HELIX 11 11 ASP A 271 ILE A 286 1 16 HELIX 12 12 LEU A 287 SER A 291 5 5 HELIX 13 13 GLU A 310 ALA A 320 1 11 SHEET 1 AA 2 SER A 1 PHE A 7 0 SHEET 2 AA 2 LEU A 16 ALA A 22 -1 O TYR A 17 N HIS A 6 SHEET 1 AB 5 TYR A 99 PRO A 103 0 SHEET 2 AB 5 GLU A 30 ALA A 39 -1 O VAL A 31 N VAL A 102 SHEET 3 AB 5 GLU A 65 LEU A 73 -1 O SER A 67 N ALA A 36 SHEET 4 AB 5 THR A 86 LEU A 90 -1 O ALA A 87 N GLY A 68 SHEET 5 AB 5 LEU A 107 PRO A 109 -1 O MET A 108 N MET A 88 SHEET 1 AC 4 TYR A 99 PRO A 103 0 SHEET 2 AC 4 GLU A 30 ALA A 39 -1 O VAL A 31 N VAL A 102 SHEET 3 AC 4 LYS A 326 GLU A 330 -1 O LEU A 329 N SER A 38 SHEET 4 AC 4 LEU A 302 PRO A 307 1 N ASP A 303 O LYS A 326 SHEET 1 AD 6 ALA A 189 ASN A 192 0 SHEET 2 AD 6 ILE A 168 ALA A 173 1 O VAL A 171 N PHE A 191 SHEET 3 AD 6 TYR A 144 ILE A 147 1 O VAL A 145 N LEU A 170 SHEET 4 AD 6 VAL A 211 ASP A 216 1 N ASN A 212 O TYR A 144 SHEET 5 AD 6 LEU A 230 LEU A 238 1 N ALA A 231 O VAL A 211 SHEET 6 AD 6 SER A 261 THR A 264 1 O SER A 261 N TRP A 236 SITE 1 AC1 24 ASN A 41 ARG A 42 GLU A 124 THR A 128 SITE 2 AC1 24 ALA A 149 SER A 152 GLY A 153 VAL A 154 SITE 3 AC1 24 ALA A 173 GLY A 174 LYS A 178 TYR A 193 SITE 4 AC1 24 CYS A 217 ILE A 218 TYR A 222 TYR A 239 SITE 5 AC1 24 MET A 242 SER A 265 LEU A 266 LEU A 267 SITE 6 AC1 24 MET A 318 ASN A 321 ASN A 323 HOH A2011 CRYST1 46.860 46.860 315.930 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003165 0.00000