HEADER RNA BINDING PROTEIN 24-NOV-06 2JA9 TITLE STRUCTURE OF THE N-TERMINAL DELETION OF YEAST EXOSOME COMPONENT RRP40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOSOME COMPLEX EXONUCLEASE RRP40; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 62-236; COMPND 5 SYNONYM: RRP40, RIBOSOMAL RNA-PROCESSING PROTEIN 40; COMPND 6 EC: 3.1.13.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKERS' YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RNA-BINDING PROTEIN, RNA, EXOSOME, NUCLEASE, S1 DOMAIN, KH DOMAIN, KEYWDS 2 HYDROLASE, RNA-BINDING, EXONUCLEASE, NUCLEAR PROTEIN, RRNA KEYWDS 3 PROCESSING, NUCLEIC-ACID BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ODDONE,E.LORENTZEN,J.BASQUIN,A.GASCH,V.RYBIN,E.CONTI,M.SATTLER REVDAT 4 08-MAY-24 2JA9 1 REMARK REVDAT 3 24-FEB-09 2JA9 1 VERSN REVDAT 2 20-MAR-07 2JA9 1 HEADER KEYWDS JRNL REVDAT 1 13-DEC-06 2JA9 0 JRNL AUTH A.ODDONE,E.LORENTZEN,J.BASQUIN,A.GASCH,V.RYBIN,E.CONTI, JRNL AUTH 2 M.SATTLER JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE YEAST JRNL TITL 2 EXOSOME COMPONENT RRP40 JRNL REF EMBO REP. V. 8 63 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17159918 JRNL DOI 10.1038/SJ.EMBOR.7400856 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1083 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.480 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1390 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1264 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1889 ; 0.997 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2939 ; 0.710 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 5.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;39.609 ;24.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;13.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1577 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 289 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 262 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1213 ; 0.157 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 700 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 858 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 0.654 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 361 ; 0.066 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1417 ; 0.714 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 594 ; 1.005 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 468 ; 1.482 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2JA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1290030576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 45.00 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 36.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350,200 MM NA2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 76.75500 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 76.75500 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 76.75500 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 76.75500 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 38.37750 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 115.13250 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 115.13250 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 115.13250 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 38.37750 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 115.13250 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 38.37750 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 115.13250 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 38.37750 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 38.37750 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 38.37750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 38.37750 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -38.37750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -38.37750 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CE NZ REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CD CE NZ REMARK 470 LYS A 128 CB CG CD CE NZ REMARK 470 GLU A 129 CB CG CD OE1 OE2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LEU A 235 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 236 O HOH A 2096 1.82 REMARK 500 OG1 THR A 236 O HOH A 2096 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 -5.86 81.03 REMARK 500 PHE A 80 -169.09 -121.49 REMARK 500 ALA A 101 45.78 -89.81 REMARK 500 ALA A 126 55.81 -148.74 REMARK 500 ASN A 218 58.39 29.01 REMARK 500 ASN A 218 56.74 30.94 REMARK 500 GLU A 233 33.54 -98.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A DISCREPANCY IN RESIDUE 160 OF THE SEQUENCE (F REMARK 999 IN THE UNIPROT SEQUENCE, L IN OUR SEQUENCE). WE BELIEVE REMARK 999 THIS IS A MISTAKE IN THE DATABASE, AS WE HAVE CLONED THE REMARK 999 PROTEIN FROM THREE DIFFERENT YEAST SOURCES, AND ALWAYS GOT REMARK 999 LEU INSTEAD OF PHE AT POSITION 160. DBREF 2JA9 A 62 236 UNP Q08285 RRP40_YEAST 62 236 SEQADV 2JA9 LEU A 160 UNP Q08285 PHE 160 CONFLICT SEQRES 1 A 175 LYS ARG TYR ILE PRO SER VAL ASN ASP PHE VAL ILE GLY SEQRES 2 A 175 VAL ILE ILE GLY THR PHE SER ASP SER TYR LYS VAL SER SEQRES 3 A 175 LEU GLN ASN PHE SER SER SER VAL SER LEU SER TYR MET SEQRES 4 A 175 ALA PHE PRO ASN ALA SER LYS LYS ASN ARG PRO THR LEU SEQRES 5 A 175 GLN VAL GLY ASP LEU VAL TYR ALA ARG VAL CYS THR ALA SEQRES 6 A 175 GLU LYS GLU LEU GLU ALA GLU ILE GLU CYS PHE ASP SER SEQRES 7 A 175 THR THR GLY ARG ASP ALA GLY PHE GLY ILE LEU GLU ASP SEQRES 8 A 175 GLY MET ILE ILE ASP VAL ASN LEU ASN PHE ALA ARG GLN SEQRES 9 A 175 LEU LEU PHE ASN ASN ASP PHE PRO LEU LEU LYS VAL LEU SEQRES 10 A 175 ALA ALA HIS THR LYS PHE GLU VAL ALA ILE GLY LEU ASN SEQRES 11 A 175 GLY LYS ILE TRP VAL LYS CYS GLU GLU LEU SER ASN THR SEQRES 12 A 175 LEU ALA CYS TYR ARG THR ILE MET GLU CYS CYS GLN LYS SEQRES 13 A 175 ASN ASP THR ALA ALA PHE LYS ASP ILE ALA LYS ARG GLN SEQRES 14 A 175 PHE LYS GLU ILE LEU THR FORMUL 2 HOH *96(H2 O) HELIX 1 1 ASN A 159 ASN A 169 1 11 HELIX 2 2 PRO A 173 ALA A 180 1 8 HELIX 3 3 GLU A 200 ASN A 218 1 19 HELIX 4 4 ASP A 219 ALA A 221 5 3 HELIX 5 5 ALA A 222 PHE A 231 1 10 SHEET 1 AA 8 PHE A 71 THR A 79 0 SHEET 2 AA 8 LEU A 118 THR A 125 -1 O VAL A 119 N GLY A 74 SHEET 3 AA 8 GLU A 133 GLU A 135 -1 O GLU A 133 N CYS A 124 SHEET 4 AA 8 VAL A 95 SER A 98 1 O SER A 96 N ILE A 134 SHEET 5 AA 8 SER A 83 SER A 87 -1 O TYR A 84 N LEU A 97 SHEET 6 AA 8 PHE A 71 THR A 79 -1 O VAL A 75 N SER A 87 SHEET 7 AA 8 LEU A 118 THR A 125 -1 O VAL A 119 N GLY A 74 SHEET 8 AA 8 PHE A 71 THR A 79 -1 O VAL A 72 N ALA A 121 SHEET 1 AB 3 MET A 154 ASP A 157 0 SHEET 2 AB 3 LYS A 193 LYS A 197 -1 O ILE A 194 N ILE A 156 SHEET 3 AB 3 GLU A 185 GLY A 189 -1 O GLU A 185 N LYS A 197 CRYST1 153.510 153.510 153.510 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006514 0.00000