HEADER TRANSFERASE 30-NOV-06 2JAT TITLE STRUCTURE OF DEOXYADENOSINE KINASE FROM M.MYCOIDES WITH PRODUCTS DCMP TITLE 2 AND A FLEXIBLE DCDP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYGUANOSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEOXYADENOSINE KINASE; COMPND 5 EC: 2.7.1.113; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA MYCOIDES SUBSP. MYCOIDES SC; SOURCE 3 ORGANISM_TAXID: 44101; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS KINASE, TRANSFERASE, DEOXYRIBONUCLEOSIDE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,L.WANG,S.ERIKSSON,H.EKLUND REVDAT 6 13-DEC-23 2JAT 1 REMARK LINK REVDAT 5 13-JUL-11 2JAT 1 VERSN REVDAT 4 09-JUN-09 2JAT 1 REMARK REVDAT 3 24-FEB-09 2JAT 1 VERSN REVDAT 2 20-FEB-07 2JAT 1 JRNL REVDAT 1 03-JAN-07 2JAT 0 JRNL AUTH M.WELIN,L.WANG,S.ERIKSSON,H.EKLUND JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A BACTERIAL DEOXYADENOSINE JRNL TITL 2 KINASE REVEALS THE BASIS FOR SUBSTRATE SPECIFICITY. JRNL REF J.MOL.BIOL. V. 366 1615 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17229440 JRNL DOI 10.1016/J.JMB.2006.12.010 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3314 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4471 ; 1.269 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.822 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.025 ;25.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;17.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2418 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1578 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2309 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1941 ; 0.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3112 ; 0.826 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 1.156 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 1.902 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 66 1 REMARK 3 1 B 1 B 66 1 REMARK 3 2 A 73 A 113 1 REMARK 3 2 B 73 B 113 1 REMARK 3 3 A 125 A 141 1 REMARK 3 3 B 125 B 141 1 REMARK 3 4 A 150 A 200 1 REMARK 3 4 B 150 B 200 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1468 ; 0.00 ; 0.01 REMARK 3 TIGHT POSITIONAL 1 B (A): 1468 ; 0.00 ; 0.01 REMARK 3 TIGHT THERMAL 1 A (A**2): 1468 ; 0.03 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1468 ; 0.03 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4330 18.1070 15.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.0314 REMARK 3 T33: 0.0859 T12: 0.0492 REMARK 3 T13: 0.1592 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 3.7036 L22: 4.8852 REMARK 3 L33: 5.3598 L12: 0.4137 REMARK 3 L13: -1.4703 L23: -1.4945 REMARK 3 S TENSOR REMARK 3 S11: 0.5062 S12: 0.1634 S13: 0.6494 REMARK 3 S21: -0.1480 S22: -0.1517 S23: -0.0694 REMARK 3 S31: -0.6419 S32: -0.0195 S33: -0.3545 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 23.260 28.449 -15.037 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0292 REMARK 3 T33: 0.0848 T12: 0.0497 REMARK 3 T13: 0.0297 T23: 0.1424 REMARK 3 L TENSOR REMARK 3 L11: 5.1274 L22: 3.3113 REMARK 3 L33: 5.5166 L12: -0.3758 REMARK 3 L13: -2.3779 L23: -0.3498 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.1636 S13: 0.2578 REMARK 3 S21: 0.4321 S22: 0.2802 S23: 0.5880 REMARK 3 S31: -0.3309 S32: -0.5597 S33: -0.3063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 68-72, 114-122 AND 143-147 ARE DISORDERED. REMARK 3 THE DEOXYCYTIDINE PART OF DCDP IS VERY FLEXIBLE AND MODELLED AS REMARK 3 A DIPHOSPHATE. REMARK 4 REMARK 4 2JAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1290030682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.90 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2JAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M MGCL2, PH 5.90 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.77000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 68 REMARK 465 LYS A 69 REMARK 465 ASN A 70 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 LEU A 116 REMARK 465 LYS A 117 REMARK 465 ILE A 118 REMARK 465 PRO A 119 REMARK 465 GLU A 120 REMARK 465 ASN A 121 REMARK 465 LYS A 122 REMARK 465 ASN A 203 REMARK 465 PRO A 204 REMARK 465 ASN A 205 REMARK 465 GLU B 114 REMARK 465 ASN B 115 REMARK 465 LEU B 116 REMARK 465 LYS B 117 REMARK 465 ILE B 118 REMARK 465 PRO B 119 REMARK 465 GLU B 120 REMARK 465 ASN B 121 REMARK 465 LYS B 122 REMARK 465 LYS B 202 REMARK 465 ASN B 203 REMARK 465 PRO B 204 REMARK 465 ASN B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 79.78 -166.31 REMARK 500 LYS A 66 13.27 -69.69 REMARK 500 ARG A 78 143.22 84.72 REMARK 500 ASP B 45 79.68 -166.14 REMARK 500 ARG B 78 143.18 84.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 POP A1204 O2 REMARK 620 2 DCM A1205 O1P 88.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 POP B1203 O5 REMARK 620 2 DCM B1204 O1P 88.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCM A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCM B 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JAQ RELATED DB: PDB REMARK 900 STRUCTURE OF DEOXYADENOSINE KINASE FROM M. MYCOIDES WITH BOUND DCTP REMARK 900 RELATED ID: 2JAS RELATED DB: PDB REMARK 900 STRUCTURE OF DEOXYADENOSINE KINASE FROM M. MYCOIDES WITH BOUND DATP DBREF 2JAT A 1 205 UNP Q93IG4 Q93IG4_MYCMS 1 205 DBREF 2JAT B 1 205 UNP Q93IG4 Q93IG4_MYCMS 1 205 SEQRES 1 A 205 MET LYS ILE ALA ILE PHE GLY THR VAL GLY ALA GLY LYS SEQRES 2 A 205 SER THR ILE SER ALA GLU ILE SER LYS LYS LEU GLY TYR SEQRES 3 A 205 GLU ILE PHE LYS GLU PRO VAL GLU GLU ASN PRO TYR PHE SEQRES 4 A 205 GLU GLN TYR TYR LYS ASP LEU LYS LYS THR VAL PHE LYS SEQRES 5 A 205 MET GLN ILE TYR MET LEU THR ALA ARG SER LYS GLN LEU SEQRES 6 A 205 LYS GLN ALA LYS ASN LEU GLU ASN ILE ILE PHE ASP ARG SEQRES 7 A 205 THR LEU LEU GLU ASP PRO ILE PHE MET LYS VAL ASN TYR SEQRES 8 A 205 ASP LEU ASN ASN VAL ASP GLN THR ASP TYR ASN THR TYR SEQRES 9 A 205 ILE ASP PHE TYR ASN ASN VAL VAL LEU GLU ASN LEU LYS SEQRES 10 A 205 ILE PRO GLU ASN LYS LEU SER PHE ASP ILE VAL ILE TYR SEQRES 11 A 205 LEU ARG VAL SER THR LYS THR ALA ILE SER ARG ILE LYS SEQRES 12 A 205 LYS ARG GLY ARG SER GLU GLU LEU LEU ILE GLY GLU GLU SEQRES 13 A 205 TYR TRP GLU THR LEU ASN LYS ASN TYR GLU GLU PHE TYR SEQRES 14 A 205 LYS GLN ASN VAL TYR ASP PHE PRO PHE PHE VAL VAL ASP SEQRES 15 A 205 ALA GLU LEU ASP VAL LYS THR GLN ILE GLU LEU ILE MET SEQRES 16 A 205 ASN LYS LEU ASN SER ILE LYS ASN PRO ASN SEQRES 1 B 205 MET LYS ILE ALA ILE PHE GLY THR VAL GLY ALA GLY LYS SEQRES 2 B 205 SER THR ILE SER ALA GLU ILE SER LYS LYS LEU GLY TYR SEQRES 3 B 205 GLU ILE PHE LYS GLU PRO VAL GLU GLU ASN PRO TYR PHE SEQRES 4 B 205 GLU GLN TYR TYR LYS ASP LEU LYS LYS THR VAL PHE LYS SEQRES 5 B 205 MET GLN ILE TYR MET LEU THR ALA ARG SER LYS GLN LEU SEQRES 6 B 205 LYS GLN ALA LYS ASN LEU GLU ASN ILE ILE PHE ASP ARG SEQRES 7 B 205 THR LEU LEU GLU ASP PRO ILE PHE MET LYS VAL ASN TYR SEQRES 8 B 205 ASP LEU ASN ASN VAL ASP GLN THR ASP TYR ASN THR TYR SEQRES 9 B 205 ILE ASP PHE TYR ASN ASN VAL VAL LEU GLU ASN LEU LYS SEQRES 10 B 205 ILE PRO GLU ASN LYS LEU SER PHE ASP ILE VAL ILE TYR SEQRES 11 B 205 LEU ARG VAL SER THR LYS THR ALA ILE SER ARG ILE LYS SEQRES 12 B 205 LYS ARG GLY ARG SER GLU GLU LEU LEU ILE GLY GLU GLU SEQRES 13 B 205 TYR TRP GLU THR LEU ASN LYS ASN TYR GLU GLU PHE TYR SEQRES 14 B 205 LYS GLN ASN VAL TYR ASP PHE PRO PHE PHE VAL VAL ASP SEQRES 15 B 205 ALA GLU LEU ASP VAL LYS THR GLN ILE GLU LEU ILE MET SEQRES 16 B 205 ASN LYS LEU ASN SER ILE LYS ASN PRO ASN HET MG A1203 1 HET POP A1204 9 HET DCM A1205 20 HET MG B1202 1 HET POP B1203 9 HET DCM B1204 20 HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- HETNAM DCM 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 POP 2(H2 O7 P2 2-) FORMUL 5 DCM 2(C9 H14 N3 O7 P) FORMUL 9 HOH *7(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 TYR A 38 TYR A 43 1 6 HELIX 3 3 ASP A 45 LYS A 66 1 22 HELIX 4 4 GLU A 82 LEU A 93 1 12 HELIX 5 5 ASP A 97 VAL A 111 1 15 HELIX 6 6 SER A 134 GLY A 146 1 13 HELIX 7 7 ARG A 147 LEU A 152 1 6 HELIX 8 8 GLU A 155 VAL A 173 1 19 HELIX 9 9 ASP A 186 SER A 200 1 15 HELIX 10 10 GLY B 12 GLY B 25 1 14 HELIX 11 11 TYR B 38 TYR B 43 1 6 HELIX 12 12 ASP B 45 LYS B 69 1 25 HELIX 13 13 GLU B 82 LEU B 93 1 12 HELIX 14 14 ASP B 97 VAL B 111 1 15 HELIX 15 15 SER B 134 GLY B 146 1 13 HELIX 16 16 SER B 148 LEU B 152 5 5 HELIX 17 17 GLU B 155 VAL B 173 1 19 HELIX 18 18 ASP B 186 SER B 200 1 15 SHEET 1 AA 5 GLU A 27 PHE A 29 0 SHEET 2 AA 5 ILE A 74 ASP A 77 1 O ILE A 75 N PHE A 29 SHEET 3 AA 5 LYS A 2 PHE A 6 1 O ILE A 3 N PHE A 76 SHEET 4 AA 5 ILE A 127 ARG A 132 1 O ILE A 127 N ALA A 4 SHEET 5 AA 5 PHE A 178 ASP A 182 1 O PHE A 179 N TYR A 130 SHEET 1 BA 5 GLU B 27 PHE B 29 0 SHEET 2 BA 5 ILE B 74 ASP B 77 1 O ILE B 75 N PHE B 29 SHEET 3 BA 5 LYS B 2 PHE B 6 1 O ILE B 3 N PHE B 76 SHEET 4 BA 5 ILE B 127 ARG B 132 1 O ILE B 127 N ALA B 4 SHEET 5 BA 5 PHE B 178 ASP B 182 1 O PHE B 179 N TYR B 130 LINK MG MG A1203 O2 POP A1204 1555 1555 2.20 LINK MG MG A1203 O1P DCM A1205 1555 1555 2.03 LINK MG MG B1202 O5 POP B1203 1555 1555 2.16 LINK MG MG B1202 O1P DCM B1204 1555 1555 2.01 SITE 1 AC1 4 SER A 14 ASP A 77 POP A1204 DCM A1205 SITE 1 AC2 4 SER B 14 ASP B 77 POP B1203 DCM B1204 SITE 1 AC3 11 THR A 8 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC3 11 LYS A 13 SER A 14 THR A 15 ARG A 145 SITE 3 AC3 11 MG A1203 DCM A1205 HOH A2004 SITE 1 AC4 13 VAL A 9 LYS A 13 VAL A 33 TYR A 42 SITE 2 AC4 13 TYR A 43 GLN A 54 ARG A 78 ASP A 83 SITE 3 AC4 13 PHE A 86 GLU A 150 MG A1203 POP A1204 SITE 4 AC4 13 HOH A2001 SITE 1 AC5 11 THR B 8 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC5 11 LYS B 13 SER B 14 THR B 15 ARG B 145 SITE 3 AC5 11 MG B1202 DCM B1204 HOH B2003 SITE 1 AC6 12 VAL B 9 LYS B 13 VAL B 33 TYR B 42 SITE 2 AC6 12 TYR B 43 GLN B 54 ARG B 78 ASP B 83 SITE 3 AC6 12 PHE B 86 GLU B 150 MG B1202 POP B1203 CRYST1 83.931 83.931 53.310 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011915 0.006879 0.000000 0.00000 SCALE2 0.000000 0.013758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018758 0.00000 MTRIX1 1 -0.499300 -0.866400 0.000668 41.96000 1 MTRIX2 1 -0.866400 0.499300 -0.001040 24.23000 1 MTRIX3 1 0.000568 -0.001098 -1.000000 0.30490 1